Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 6.1e-55 217.2 109 100.0
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 3.0e-54 214.9 108 99.1
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 1.7e-44 182.6 104 88.5
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 1.7e-44 182.6 104 88.5
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.7e-44 182.6 104 88.5
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 1.7e-44 182.6 104 88.5
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.7e-44 182.6 104 88.5
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 1.7e-44 182.6 104 88.5
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 2.2e-44 182.2 104 88.5
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 2.2e-44 182.2 104 87.5
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 2.8e-44 181.8 104 86.5
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 3.7e-44 181.4 104 87.5
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 3.7e-44 181.4 104 87.5
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 3.7e-44 181.4 104 87.5
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 1.1e-43 179.9 104 87.5
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 1.1e-43 179.9 104 87.5
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.8e-43 179.1 103 87.4
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 1.8e-43 179.1 104 87.5
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 1.8e-43 179.1 104 87.5
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 7.0e-43 177.2 104 83.7
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 9.1e-43 176.8 104 84.6
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 2.6e-42 175.3 104 82.7
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 4.5e-42 174.5 104 82.7
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 4.5e-42 174.5 104 80.8
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 4.5e-42 174.5 104 80.8
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 4.5e-42 174.5 104 82.7
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 7.7e-42 173.7 104 82.7
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 1.0e-41 173.3 103 81.6
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 1.7e-41 172.6 104 81.7
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 2.2e-41 172.2 104 80.8
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.2e-41 172.2 104 81.7
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 2.2e-41 172.2 104 81.7
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 2.2e-41 172.2 104 81.7
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 2.9e-41 171.8 102 82.4
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 2.9e-41 171.8 104 80.8
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 2.9e-41 171.8 104 80.8
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 3.8e-41 171.4 104 80.8
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 3.8e-41 171.4 104 80.8
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 3.8e-41 171.4 104 80.8
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 5.0e-41 171.0 104 79.8
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.0e-41 171.0 104 79.8
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 6.5e-41 170.6 104 79.8
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 8.5e-41 170.2 104 79.8
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.1e-40 169.9 104 80.8
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.1e-40 169.9 104 77.9
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 1.1e-40 169.9 104 79.8
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.1e-40 169.9 104 79.8
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.1e-40 169.9 104 79.8
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.1e-40 169.9 104 79.8
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 1.1e-40 169.9 104 78.8
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 1.9e-40 169.1 104 78.8
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 1.9e-40 169.1 104 78.8
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 1.9e-40 169.1 104 79.8
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 2.5e-40 168.7 104 78.8
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 2.5e-40 168.7 104 78.8
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.5e-40 168.7 104 79.8
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.5e-40 168.7 104 79.8
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 2.5e-40 168.7 104 78.8
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 2.5e-40 168.7 104 78.8
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 2.5e-40 168.7 104 78.8
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 2.5e-40 168.7 104 79.8
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 3.2e-40 168.3 104 78.8
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 3.2e-40 168.3 104 78.8
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 3.2e-40 168.3 104 78.8
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 3.2e-40 168.3 104 78.8
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.2e-40 168.3 104 78.8
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.2e-40 168.3 104 78.8
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 3.2e-40 168.3 104 78.8
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 3.2e-40 168.3 104 78.8
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 3.2e-40 168.3 104 78.8
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 3.2e-40 168.3 104 78.8
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 3.2e-40 168.3 104 80.8
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 3.2e-40 168.3 104 78.8
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 4.2e-40 167.9 104 79.8
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 4.2e-40 167.9 104 78.8
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 5.5e-40 167.5 104 76.9
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 5.5e-40 167.5 104 77.9
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 5.5e-40 167.5 102 79.4
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 7.2e-40 167.2 104 77.9
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 7.2e-40 167.2 104 79.8
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 7.2e-40 167.2 104 77.9
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 7.2e-40 167.2 103 78.6
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 9.4e-40 166.8 104 77.9
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.2e-39 166.4 104 76.9
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 1.2e-39 166.4 104 76.9
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 1.6e-39 166.0 110 74.5
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 1.6e-39 166.0 103 76.7
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.1e-39 165.6 104 77.9
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 2.1e-39 165.6 104 77.9
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 2.7e-39 165.2 104 76.9
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 2.7e-39 165.2 104 78.8
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 2.7e-39 165.2 104 76.9
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 3.6e-39 164.9 104 75.0
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 3.6e-39 164.9 104 77.9
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 3.6e-39 164.9 104 76.0
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 6.1e-39 164.1 103 75.7
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 8.0e-39 163.7 104 76.9
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 8.0e-39 163.7 104 77.9
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 1.4e-38 162.9 102 76.5
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 2.3e-38 162.2 104 74.0
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 4.0e-38 161.4 98 79.6
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 5.2e-38 161.0 104 75.0
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 5.2e-38 161.0 104 75.0
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 5.2e-38 161.0 104 74.0
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 1.2e-37 159.8 104 74.0
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.0e-37 159.1 111 73.0
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 4.4e-37 157.9 104 73.1
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 9.7e-37 156.8 104 72.1
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 1.7e-36 156.0 104 69.2
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 4.8e-36 154.5 104 71.2
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 1.1e-35 153.3 90 80.0
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 1.4e-35 152.9 104 70.2
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 4.1e-35 151.4 92 78.3
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 3.5e-34 148.3 150 54.7
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 1.7e-33 146.0 103 62.1
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.7e-33 146.0 105 70.5
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 2.7e-31 138.7 103 62.1
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 1.0e-30 136.7 102 61.8
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.4e-30 136.3 81 79.0
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 6.8e-30 134.0 103 59.2
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 1.8e-27 125.9 76 81.6
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 7.0e-27 124.0 76 77.6
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.6e-26 122.9 75 78.7
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 2.0e-26 122.5 70 81.4
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 1.3e-25 119.8 104 61.5
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.9e-24 115.9 87 67.8
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 3.6e-23 111.7 104 58.7
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 5.2e-22 107.8 92 68.5
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 7.5e-21 104.0 75 69.3
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 1.8e-19 99.4 105 48.6
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 1.2e-18 96.7 55 80.0
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 8.6e-17 90.5 78 60.3
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 8.0e-15 84.0 49 77.6
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 3.4e-13 78.6 93 39.8
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 5.2e-06 54.7 30 73.3


User provided reference genes

Program Settings