Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10239 Brassica carinata HOM05D023822 ORTHO05D000218 3.4e-143 511.5 240 100.0
C04p31190 Brassica napus HOM05D000327 ORTHO05D032645 4.0e-35 152.5 73 98.6
C08p04110 Brassica napus HOM05D000327 ORTHO05D032645 9.0e-35 151.4 73 97.3
BcaC04g19893 Brassica carinata HOM05D000327 ORTHO05D032645 2.0e-34 150.2 73 95.9
BcaC09g52188 Brassica carinata HOM05D023822 ORTHO05D027178 1.1e-21 107.8 52 98.1
BcaC06g30628 Brassica carinata HOM05D000327 ORTHO05D000218 2.5e-21 106.7 149 45.0
CARHR226490 Cardamine hirsuta HOM05D000327 ORTHO05D000218 1.5e-18 97.4 154 40.9
BcaC09g51386 Brassica carinata HOM05D000327 ORTHO05D000218 2.0e-18 97.1 140 42.9
C01p13680 Brassica napus HOM05D000327 ORTHO05D000218 2.0e-18 97.1 140 42.9
AL7G34370 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 2.6e-18 96.7 140 42.9
AT4G19670 Arabidopsis thaliana HOM05D000327 ORTHO05D000218 4.5e-18 95.9 140 42.9
A01p11590 Brassica napus HOM05D000327 ORTHO05D000218 4.5e-18 95.9 140 42.1
Sp7g18240 Schrenkiella parvula HOM05D000327 ORTHO05D000218 5.9e-18 95.5 154 40.3
BolC1t01342H Brassica oleracea HOM05D000327 ORTHO05D000218 7.7e-18 95.1 140 42.1
Carub.0007s2148 Capsella rubella HOM05D000327 ORTHO05D000218 7.7e-18 95.1 154 39.6
Thhalv10024888m.g Eutrema salsugineum HOM05D000327 ORTHO05D000218 7.7e-18 95.1 140 42.9
BcaNung01758 Brassica carinata HOM05D000327 ORTHO05D000218 1.3e-17 94.4 140 42.1
BraA01t01107Z Brassica rapa HOM05D000327 ORTHO05D000218 2.2e-17 93.6 140 41.4
BcaC09g50056 Brassica carinata HOM05D023822 ORTHO05D027178 6.1e-15 85.5 51 78.4
BolC5t32156H Brassica oleracea HOM05D000327 ORTHO05D031721 1.8e-14 84.0 72 56.9
FAN25G1512 Fragaria x ananassa HOM05D000327 ORTHO05D000218 3.0e-14 83.2 141 37.6
FAN16G2897 Fragaria x ananassa HOM05D000327 ORTHO05D000218 3.9e-14 82.8 141 37.6
FAN21G1375 Fragaria x ananassa HOM05D000327 ORTHO05D000218 3.9e-14 82.8 141 37.6
FvH4_3g12010 Fragaria vesca HOM05D000327 ORTHO05D000218 8.8e-14 81.6 141 38.3
RcHm_v2.0_Chr5g0019691 Rosa chinensis HOM05D000327 ORTHO05D000218 8.8e-14 81.6 141 36.9
Cfa000730 Carpinus fangiana HOM05D000327 ORTHO05D000218 2.6e-13 80.1 154 34.4
Haze_06012 Corylus avellana HOM05D000327 ORTHO05D000218 2.6e-13 80.1 154 34.4
Nn7g38067 Nelumbo nucifera HOM05D000327 ORTHO05D000218 3.3e-13 79.7 141 35.5
Eucgr.D01052 Eucalyptus grandis HOM05D000327 ORTHO05D000218 4.4e-13 79.3 145 34.5
Thecc.06G138800 Theobroma cacao HOM05D000327 ORTHO05D000218 4.4e-13 79.3 161 34.2
Aa31LG6G2220 Aethionema arabicum HOM05D000327 ORTHO05D000218 5.7e-13 79.0 144 37.5
Prupe.4G108300 Prunus persica HOM05D000327 ORTHO05D000218 5.7e-13 79.0 143 35.7
Ciclev10014925m.g Citrus clementina HOM05D000327 ORTHO05D000218 7.4e-13 78.6 140 35.0
MELO3C021806.2 Cucumis melo HOM05D000327 ORTHO05D000218 1.3e-12 77.8 155 33.5
Atru.chr10.604 Acer truncatum HOM05D000327 ORTHO05D000218 1.7e-12 77.4 141 34.8
MD10G1236000 Malus domestica HOM05D000327 ORTHO05D000218 1.7e-12 77.4 142 35.2
MSTRG.16335 Avicennia marina HOM05D000327 ORTHO05D000218 2.8e-12 76.6 136 36.0
CiPaw.10G065900 Carya illinoinensis HOM05D000327 ORTHO05D000218 2.8e-12 76.6 140 34.3
ClCG01G009130 Citrullus lanatus HOM05D000327 ORTHO05D000218 2.8e-12 76.6 155 32.9
COL.COLO4_30955 Corchorus olitorius HOM05D000327 ORTHO05D000218 2.8e-12 76.6 141 34.0
CsaV3_1G046510 Cucumis sativus L. HOM05D000327 ORTHO05D000218 2.8e-12 76.6 141 34.8
Potri.015G117600 Populus trichocarpa HOM05D000327 ORTHO05D000218 2.8e-12 76.6 147 34.0
Duzib192G0490 Durio zibethinus HOM05D000327 ORTHO05D000218 3.7e-12 76.3 141 34.8
PGR083G0861 Punica granatum HOM05D000327 ORTHO05D000218 3.7e-12 76.3 149 33.6
C05p34240 Brassica napus HOM05D030087 ORTHO05D031721 4.8e-12 75.9 97 43.3
Manes.16G047576 Manihot esculenta HOM05D000327 ORTHO05D000218 4.8e-12 75.9 141 34.8
Sed0016472 Sechium edule HOM05D000327 ORTHO05D000218 4.8e-12 75.9 155 32.9
MD05G1255900 Malus domestica HOM05D000327 ORTHO05D000218 8.2e-12 75.1 144 34.0
Sabra12G0089700 Salix brachista HOM05D000327 ORTHO05D000218 8.2e-12 75.1 155 32.9
CSS0005495 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 1.1e-11 74.7 153 33.3
CANSAT35G0541 Cannabis sativa HOM05D000327 ORTHO05D000218 1.1e-11 74.7 141 35.5
CiPaw.09G079300 Carya illinoinensis HOM05D000327 ORTHO05D000218 1.4e-11 74.3 140 33.6
TAR627G1088 Trochodendron aralioides HOM05D000327 ORTHO05D000218 1.4e-11 74.3 147 34.0
GSVIVG01026257001 Vitis vinifera HOM05D000327 ORTHO05D000218 1.8e-11 73.9 143 35.0
Duzib235G0173 Durio zibethinus HOM05D000327 ORTHO05D000218 2.4e-11 73.6 142 34.5
MBI18_g04365_MAGBIO Magnolia biondii HOM05D000327 ORTHO05D000218 2.4e-11 73.6 147 33.3
BcaB04g17523 Brassica carinata HOM05D000327 ORTHO05D000218 3.1e-11 73.2 45 71.1
BolC4t24668H Brassica oleracea HOM05D023822 ORTHO05D027178 3.1e-11 73.2 161 36.6
THA.LOC104811473 Tarenaya hassleriana HOM05D000327 ORTHO05D000218 4.1e-11 72.8 151 34.4
Lj6g0022216 Lotus japonicus HOM05D000327 ORTHO05D000218 5.3e-11 72.4 144 32.6
Potri.012G119000 Populus trichocarpa HOM05D000327 ORTHO05D000218 5.3e-11 72.4 141 34.0
Gohir.A05G144400 Gossypium hirsutum HOM05D000327 ORTHO05D000218 6.9e-11 72.0 141 33.3
Gorai.009G150700 Gossypium raimondii HOM05D000327 ORTHO05D000218 6.9e-11 72.0 141 33.3
Duzib160G0717 Durio zibethinus HOM05D000327 ORTHO05D000218 9.1e-11 71.6 137 33.6
PGSC0003DMG400021214 Solanum tuberosum HOM05D000327 ORTHO05D000218 9.1e-11 71.6 159 30.8
TWI38G1261 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 9.1e-11 71.6 141 32.6
VMungo0540G1796 Vigna mungo HOM05D000327 ORTHO05D000218 1.2e-10 71.2 141 34.0
Lalb_Chr09g0328781 Lupinus albus HOM05D000327 ORTHO05D000218 1.5e-10 70.9 145 33.8
QL11p018227 Quercus lobata HOM05D000327 ORTHO05D000218 1.5e-10 70.9 139 33.8
Solyc02g069230.3 Solanum lycopersicum HOM05D000327 ORTHO05D000218 1.5e-10 70.9 154 31.2
Sopen02g018390 Solanum pennellii HOM05D000327 ORTHO05D000218 1.5e-10 70.9 154 31.2
CSS0048794 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 2.0e-10 70.5 137 32.8
Sc21g0004370 Simmondsia chinensis HOM05D000327 ORTHO05D000218 2.6e-10 70.1 141 32.6
BcaC05g27463 Brassica carinata HOM05D000327 ORTHO05D031721 3.4e-10 69.7 77 51.9
BraA03t14283Z Brassica rapa HOM05D000327 ORTHO05D000218 3.4e-10 69.7 81 51.9
Glyma.09G020000 Glycine max HOM05D000327 ORTHO05D000218 3.4e-10 69.7 146 32.9
Gohir.D05G146800 Gossypium hirsutum HOM05D000327 ORTHO05D000218 3.4e-10 69.7 155 31.6
vmacro03500 Vaccinium macrocarpon HOM05D000327 ORTHO05D000218 3.4e-10 69.7 146 32.2
Actinidia22379 Actinidia chinensis HOM05D000327 ORTHO05D000218 4.5e-10 69.3 141 31.9
EL10Ac7g17231 Beta vulgaris HOM05D000327 ORTHO05D000218 4.5e-10 69.3 141 31.9
AUR62036831 Chenopodium quinoa HOM05D000327 ORTHO05D000218 4.5e-10 69.3 141 31.2
Glyma.15G126500 Glycine max HOM05D000327 ORTHO05D000218 4.5e-10 69.3 147 33.3
TAR626G1690 Trochodendron aralioides HOM05D000327 ORTHO05D000218 4.5e-10 69.3 141 31.9
Ca_18777_v3 Cicer arietinum L. HOM05D000327 ORTHO05D000218 5.9e-10 68.9 136 33.8
Gorai.010G169300 Gossypium raimondii HOM05D000327 ORTHO05D000218 5.9e-10 68.9 135 32.6
Phvul.006G131900 Phaseolus vulgaris HOM05D000327 ORTHO05D000218 5.9e-10 68.9 141 33.3
Aqoxy1G01492 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 7.7e-10 68.6 176 29.0
CSS0027721 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 7.7e-10 68.6 137 32.1
CAN.G1202.9 Capsicum annuum HOM05D000327 ORTHO05D000218 7.7e-10 68.6 145 31.0
Rhsim13G0129700 Rhododendron simsii HOM05D000327 ORTHO05D000218 7.7e-10 68.6 149 30.2
Sed0026999 Sechium edule HOM05D000327 ORTHO05D000218 7.7e-10 68.6 141 31.2
Ca_11353_v3 Cicer arietinum L. HOM05D000327 ORTHO05D000218 1.0e-09 68.2 133 34.6
Gohir.D06G145450 Gossypium hirsutum HOM05D000327 ORTHO05D000218 1.0e-09 68.2 140 31.4
Lalb_Chr16g0385331 Lupinus albus HOM05D000327 ORTHO05D000218 1.0e-09 68.2 141 32.6
Nitab4.5_0001876g0070 Nicotiana tabacum HOM05D000327 ORTHO05D000218 1.0e-09 68.2 159 30.2
Nitab4.5_0003027g0050 Nicotiana tabacum HOM05D000327 ORTHO05D000218 1.0e-09 68.2 159 30.2
Lj1A1142T64 Lonicera japonica HOM05D000327 ORTHO05D000218 1.3e-09 67.8 149 31.5
Peaxi162Scf00623g00313 Petunia axillaris HOM05D000327 ORTHO05D000218 1.3e-09 67.8 159 30.2
PSO675G0479 Papaver somniferum HOM05D000327 ORTHO05D000218 1.7e-09 67.4 174 31.0
Cc09_g06790 Coffea canephora HOM05D000327 ORTHO05D000218 2.2e-09 67.0 141 31.9
Psat1g169960 Pisum sativum HOM05D000327 ORTHO05D000218 2.2e-09 67.0 133 35.3
BolC7t45553H Brassica oleracea HOM05D000327 ORTHO05D020020 2.9e-09 66.6 62 59.7
DCAR_007792 Daucus carota HOM05D000327 ORTHO05D000218 2.9e-09 66.6 141 31.2
DCAR_004315 Daucus carota HOM05D000327 ORTHO05D000218 5.0e-09 65.9 138 31.9
PSO541G6330 Papaver somniferum HOM05D000327 ORTHO05D000218 5.0e-09 65.9 174 30.5
Ah.08g212100 Amaranthus hybridus HOM05D000327 ORTHO05D000218 8.5e-09 65.1 145 29.7
AUR62043132 Chenopodium quinoa HOM05D000327 ORTHO05D000218 1.1e-08 64.7 141 31.2
Medtr2g028870 Medicago truncatula HOM05D000327 ORTHO05D000218 1.9e-08 63.9 132 35.6
Migut.M01965 Erythranthe guttata HOM05D000327 ORTHO05D000218 2.5e-08 63.5 153 30.7
TPR.G17509 Trifolium pratense HOM05D000327 ORTHO05D000218 2.5e-08 63.5 133 32.3
Gohir.A06G142060 Gossypium hirsutum HOM05D000327 ORTHO05D000218 3.2e-08 63.2 131 32.1
BcaC02g10126 Brassica carinata HOM05D023822 ORTHO05D027178 4.2e-08 62.8 28 92.9
Hma1.2p1_0092F.1_g046800 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 5.5e-08 62.4 140 31.4
ECA238G3547 Erigeron canadensis HOM05D000327 ORTHO05D000218 7.2e-08 62.0 155 31.6
unitig_37.g12057 Utricularia gibba HOM05D000327 ORTHO05D000218 2.7e-07 60.1 142 30.3
Os12g0631200 Oryza sativa ssp. japonica HOM05D000327 ORTHO05D000218 3.6e-07 59.7 142 30.3
CSS0019482 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 4.7e-07 59.3 153 28.8
CSS0046162 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 4.7e-07 59.3 153 28.8
MD10G1236100 Malus domestica HOM05D000327 ORTHO05D000218 1.4e-06 57.8 76 40.8
Sabra15G0135800 Salix brachista HOM05D000327 ORTHO05D000218 1.4e-06 57.8 69 46.4
Zm00001eb032750 Zea mays HOM05D000327 ORTHO05D000218 1.8e-06 57.4 143 28.0
HPP92_028555 Vanilla planifolia HOM05D000327 ORTHO05D000218 2.3e-06 57.0 135 30.4


User provided reference genes

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