Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 3.0e-81 305.1 147 100.0
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 4.9e-76 287.7 143 97.2
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 3.2e-75 285.0 166 86.1
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 3.5e-74 281.6 175 81.7
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 6.7e-73 277.3 167 83.8
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 3.7e-71 271.6 175 80.0
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 1.1e-67 260.0 175 76.6
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 1.1e-67 260.0 175 76.6
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.9e-67 259.2 175 76.6
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 4.2e-67 258.1 175 76.0
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 4.2e-67 258.1 175 76.0
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 7.1e-67 257.3 175 76.0
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 2.3e-65 252.3 175 73.7
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 9.7e-64 246.9 175 72.0
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 9.7e-64 246.9 175 72.0
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 8.2e-63 243.8 176 71.6
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 1.4e-62 243.0 175 70.3
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 3.1e-62 241.9 175 70.3
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 3.1e-62 241.9 175 70.3
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 4.1e-62 241.5 176 70.5
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.5e-61 239.6 172 70.3
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 7.6e-61 237.3 175 69.1
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 1.0e-60 236.9 176 67.6
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 1.3e-60 236.5 172 69.8
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 2.9e-60 235.3 175 68.0
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 2.7e-58 228.8 201 61.2
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 6.3e-55 217.6 171 65.5
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.8e-54 216.1 172 64.0
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.4e-54 215.7 172 64.0
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 5.3e-54 214.5 172 63.4
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 9.1e-54 213.8 171 63.7
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 9.1e-54 213.8 171 63.7
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 9.1e-54 213.8 171 63.7
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 9.1e-54 213.8 171 63.7
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 9.1e-54 213.8 177 61.0
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.2e-53 213.4 171 63.7
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 4.5e-53 211.5 171 62.0
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 7.7e-53 210.7 170 64.1
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 7.7e-53 210.7 171 63.2
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.0e-52 210.3 171 63.2
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 2.2e-52 209.1 171 62.6
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 2.9e-52 208.8 171 63.2
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 6.5e-52 207.6 172 62.2
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 6.5e-52 207.6 171 62.0
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 1.1e-51 206.8 171 62.6
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.1e-51 206.8 171 62.6
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 1.4e-51 206.5 172 61.6
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.9e-51 206.1 171 62.0
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.9e-51 206.1 170 61.2
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 1.9e-51 206.1 172 61.0
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 1.9e-51 206.1 172 61.0
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 2.5e-51 205.7 171 60.8
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 2.5e-51 205.7 171 62.0
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 4.2e-51 204.9 172 61.0
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 5.5e-51 204.5 172 62.2
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 5.5e-51 204.5 172 60.5
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 5.5e-51 204.5 171 62.6
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 7.2e-51 204.1 171 61.4
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 7.2e-51 204.1 172 60.5
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 7.2e-51 204.1 172 60.5
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 9.4e-51 203.8 171 60.8
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 9.4e-51 203.8 172 61.6
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 9.4e-51 203.8 171 60.8
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.2e-50 203.4 172 61.0
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.6e-50 203.0 171 62.0
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 1.6e-50 203.0 172 61.6
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 2.1e-50 202.6 182 60.4
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.7e-50 202.2 160 64.4
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 3.6e-50 201.8 171 61.4
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 4.7e-50 201.4 171 60.2
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 6.1e-50 201.1 171 60.8
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.4e-49 199.9 171 61.4
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 1.8e-49 199.5 171 60.2
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 1.8e-49 199.5 170 62.4
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 1.8e-49 199.5 171 60.8
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.8e-49 199.5 172 59.9
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 1.8e-49 199.5 172 59.3
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 2.3e-49 199.1 171 59.6
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 2.3e-49 199.1 171 60.8
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 5.1e-49 198.0 171 61.4
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 5.1e-49 198.0 171 61.4
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 5.1e-49 198.0 172 59.9
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 5.1e-49 198.0 174 58.6
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 6.7e-49 197.6 181 59.1
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.1e-48 196.8 172 57.6
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 1.5e-48 196.4 172 58.1
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 1.5e-48 196.4 171 59.6
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 2.0e-48 196.1 170 58.8
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 2.0e-48 196.1 172 58.7
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 2.0e-48 196.1 172 59.9
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.0e-48 196.1 171 59.6
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 4.4e-48 194.9 171 57.3
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 4.4e-48 194.9 172 58.7
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 4.4e-48 194.9 184 57.6
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 4.4e-48 194.9 170 60.0
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 5.7e-48 194.5 170 58.8
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 7.4e-48 194.1 169 59.8
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.3e-47 193.4 172 58.7
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 2.2e-47 192.6 174 58.6
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 2.2e-47 192.6 172 58.1
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 8.2e-47 190.7 170 58.2
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 1.1e-46 190.3 175 57.7
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.4e-46 189.9 172 57.6
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.8e-46 189.5 170 57.6
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 1.8e-46 189.5 170 57.6
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 1.8e-46 189.5 172 55.8
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 2.4e-46 189.1 184 54.3
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 4.1e-46 188.3 172 55.8
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 5.3e-46 188.0 172 55.8
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 9.1e-46 187.2 171 56.1
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 9.1e-46 187.2 174 55.7
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 1.2e-45 186.8 170 55.9
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 3.4e-45 185.3 178 57.9
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 4.5e-45 184.9 171 55.6
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 2.2e-44 182.6 146 68.5
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.4e-43 179.9 156 57.7
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 2.5e-43 179.1 174 54.6
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 1.2e-42 176.8 169 56.2
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 1.6e-42 176.4 167 54.5
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.0e-41 173.7 134 61.9
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 3.0e-41 172.2 161 58.4
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 2.0e-40 169.5 172 50.6
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 4.4e-40 168.3 120 66.7
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 4.4e-40 168.3 113 69.9
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 2.8e-39 165.6 113 66.4
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 2.8e-39 165.6 150 56.0
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 8.2e-39 164.1 177 48.0
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 3.1e-38 162.2 170 50.6
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 4.1e-38 161.8 173 50.9
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 2.0e-37 159.5 169 52.7
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 7.7e-37 157.5 171 52.6
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.3e-36 156.8 171 49.7
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 4.7e-34 148.3 163 51.5
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 2.4e-30 136.0 171 43.3
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 3.1e-30 135.6 139 55.4
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 4.1e-30 135.2 207 40.1
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 7.0e-30 134.4 174 44.3
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 7.7e-29 131.0 132 53.0
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 5.0e-28 128.3 130 53.8
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 8.5e-28 127.5 130 53.8
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 1.5e-27 126.7 84 70.2
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 1.4e-25 120.2 128 50.8
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 9.8e-24 114.0 63 77.8
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.7e-20 103.2 118 48.3
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 6.6e-20 101.3 146 41.1
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 3.3e-19 99.0 94 53.2
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 2.1e-18 96.3 179 34.1
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 4.7e-18 95.1 255 30.6
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.0e-17 94.0 111 45.9
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 1.4e-17 93.6 193 33.2
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 4.0e-17 92.0 114 44.7
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 1.4e-14 83.6 104 41.3
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 4.5e-13 78.6 136 42.6
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 1.0e-09 67.4 62 54.8
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 1.5e-08 63.5 57 50.9
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 4.4e-08 62.0 90 41.1
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 2.2e-07 59.7 179 26.8
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 4.1e-06 55.5 117 28.2
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 7.0e-06 54.7 38 73.7


User provided reference genes

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