Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 7.4e-220 766.9 392 100.0
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 1.5e-164 583.2 457 72.4
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 2.0e-164 582.8 457 72.4
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 3.4e-164 582.0 457 72.2
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 4.4e-164 581.6 457 72.2
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 2.0e-161 572.8 472 69.9
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 7.5e-156 554.3 467 67.9
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 7.1e-154 547.7 470 67.7
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 2.7e-153 545.8 463 67.4
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.0e-152 543.9 465 66.9
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 1.7e-152 543.1 468 66.5
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 8.6e-152 540.8 471 67.3
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 8.6e-152 540.8 471 67.1
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 1.1e-151 540.4 467 67.0
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 1.5e-151 540.0 465 66.7
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 2.2e-147 526.2 493 63.5
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.6e-145 520.0 466 63.7
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 1.9e-143 513.1 468 63.7
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 4.4e-140 501.9 468 62.6
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 4.6e-137 491.9 311 85.5
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 4.2e-130 468.8 397 68.5
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 5.4e-130 468.4 481 57.4
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.8e-120 436.8 465 55.1
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.5e-119 433.7 466 56.0
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.4e-117 427.2 468 54.5
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 5.8e-116 421.8 471 54.1
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 2.2e-115 419.9 471 53.9
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 1.1e-114 417.5 458 55.0
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 4.2e-114 415.6 466 54.1
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 7.1e-114 414.8 466 54.1
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 9.3e-114 414.5 458 55.0
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 2.1e-113 413.3 459 54.2
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 7.9e-113 411.4 458 54.1
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.8e-109 400.2 467 51.8
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 4.1e-109 399.1 463 52.1
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.0e-108 396.7 467 51.4
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.0e-108 396.7 463 53.1
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.2e-107 393.3 467 52.0
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 5.0e-107 392.1 466 50.9
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 1.2e-105 387.5 462 51.9
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 1.2e-105 387.5 467 50.5
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 1.6e-105 387.1 462 52.8
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 3.6e-105 386.0 457 52.7
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 4.6e-105 385.6 460 51.7
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 1.0e-104 384.4 462 51.5
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 1.3e-104 384.0 466 51.1
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 2.3e-104 383.3 464 51.9
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 6.7e-104 381.7 425 54.1
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.5e-103 380.6 455 51.2
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.9e-103 380.2 468 50.2
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 2.5e-103 379.8 457 50.8
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.3e-103 379.4 457 50.5
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 5.7e-103 378.6 459 52.5
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 5.7e-103 378.6 455 51.2
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 1.3e-102 377.5 454 50.9
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 4.8e-102 375.6 458 50.2
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 1.8e-101 373.6 470 51.3
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 1.8e-101 373.6 465 49.9
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 6.9e-101 371.7 466 51.3
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 6.9e-101 371.7 466 50.4
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.2e-100 370.9 457 50.1
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 5.9e-100 368.6 467 49.5
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 5.9e-100 368.6 400 54.8
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 1.7e-99 367.1 471 50.1
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 5.0e-99 365.5 473 49.9
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 2.5e-98 363.2 463 50.8
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.5e-98 363.2 470 49.1
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 3.2e-98 362.8 448 48.9
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 3.2e-98 362.8 462 50.0
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 4.2e-98 362.5 471 50.3
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 9.4e-98 361.3 457 49.0
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 1.6e-97 360.5 463 50.8
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.6e-97 360.5 455 49.9
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 2.7e-97 359.8 456 50.4
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 6.1e-97 358.6 465 49.2
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.0e-96 357.8 460 48.5
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 1.0e-96 357.8 463 49.5
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 1.8e-96 357.1 458 49.1
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 2.3e-96 356.7 455 49.7
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 3.0e-96 356.3 453 49.7
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 3.9e-96 355.9 454 49.1
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 6.7e-96 355.1 502 46.8
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 8.8e-96 354.8 431 51.0
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 1.5e-95 354.0 465 48.8
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 4.4e-95 352.4 463 48.2
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.7e-94 350.5 471 47.6
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 2.2e-94 350.1 463 49.2
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 6.3e-94 348.6 398 52.0
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 8.2e-94 348.2 441 49.0
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.4e-93 347.4 469 47.8
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 4.1e-93 345.9 454 46.3
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 6.9e-93 345.1 467 48.4
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 9.1e-93 344.7 465 48.8
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 1.2e-92 344.4 458 48.7
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.5e-92 344.0 459 50.3
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 2.0e-92 343.6 466 48.3
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 2.0e-92 343.6 459 48.6
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 4.5e-92 342.4 459 49.7
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 7.7e-92 341.7 458 46.5
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 6.5e-91 338.6 465 46.9
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 2.5e-90 336.7 451 47.0
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 7.2e-90 335.1 471 46.3
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 9.4e-90 334.7 458 47.4
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 6.1e-89 332.0 424 49.3
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 6.7e-88 328.6 441 48.3
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 2.6e-87 326.6 466 46.8
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 3.3e-87 326.2 499 46.3
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 3.3e-87 326.2 438 47.5
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 4.4e-87 325.9 463 45.4
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 7.4e-87 325.1 381 54.3
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 8.2e-86 321.6 459 45.1
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 7.0e-85 318.5 463 44.7
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 5.9e-84 315.5 340 53.8
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 5.9e-84 315.5 471 44.6
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 1.4e-80 304.3 457 46.0
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.7e-78 297.4 449 44.5
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 2.2e-75 287.0 143 97.2
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 1.1e-74 284.6 375 46.4
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 5.5e-74 282.3 374 48.4
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 2.7e-73 280.0 175 81.1
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 8.0e-73 278.5 336 47.3
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 5.2e-72 275.8 167 83.8
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 8.8e-72 275.0 419 44.2
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 3.4e-71 273.1 265 65.3
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 5.7e-71 272.3 176 79.5
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.7e-70 270.8 448 43.1
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 4.8e-70 269.2 329 48.9
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 6.3e-70 268.9 377 45.6
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 1.3e-67 261.2 398 46.2
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 3.4e-63 246.5 475 37.9
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 9.8e-63 245.0 481 37.8
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 2.4e-61 240.4 505 35.6
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 5.4e-61 239.2 311 47.3
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 5.0e-59 232.6 474 37.1
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 1.6e-57 227.6 447 37.8
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 8.0e-57 225.3 487 34.9
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.1e-53 214.9 373 39.7
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 1.4e-53 214.5 115 99.1
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 2.4e-53 213.8 220 51.4
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 1.4e-40 171.4 228 44.3
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 3.1e-40 170.2 371 38.0
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 2.6e-39 167.2 470 33.4
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 4.4e-39 166.4 143 66.4
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.1e-37 161.8 264 40.5
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 4.0e-32 143.3 366 33.1
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 7.8e-28 129.0 129 55.0
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.0e-27 128.6 234 39.7
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 9.6e-26 122.1 384 29.9
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 5.8e-23 112.8 223 38.6
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 6.4e-22 109.4 182 37.9
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 9.3e-21 105.5 246 30.9
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 1.5e-18 98.2 96 52.1
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 1.8e-16 91.3 64 64.1
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 4.5e-15 86.7 171 40.9
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.7e-14 84.7 157 42.0
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 6.4e-14 82.8 104 41.3
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 1.4e-13 81.6 359 27.0
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 1.6e-09 68.2 126 42.9
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 8.1e-09 65.9 88 52.3
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.8e-08 64.7 89 40.4
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 5.3e-08 63.2 57 50.9
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 6.9e-08 62.8 191 26.2
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 2.2e-06 57.8 90 46.7


User provided reference genes

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