Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1803.5 955 100.0
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1803.5 955 100.0
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1801.9 955 99.9
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1754.6 956 97.6
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1753.4 956 97.6
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1745.7 956 96.9
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1687.2 957 94.0
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1672.5 957 93.5
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1649.0 957 90.4
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1648.3 957 90.9
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1644.4 957 92.0
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1642.1 957 91.1
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1639.0 957 90.9
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1624.4 958 90.3
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1543.1 965 85.5
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1436.8 973 79.5
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1268.1 985 70.1
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1263.8 990 68.2
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1258.4 987 68.8
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1257.7 968 69.4
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1246.9 1046 65.1
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1245.0 990 68.1
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1242.6 990 67.3
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1240.7 963 68.5
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1240.7 963 68.5
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1238.0 999 67.4
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1238.0 972 68.7
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1236.1 988 67.3
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1234.9 1035 66.1
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1234.2 1031 65.6
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1231.1 999 66.4
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1230.3 971 68.6
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1229.9 999 67.6
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1229.2 965 68.0
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1227.6 966 69.4
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1226.1 1043 65.7
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1225.7 1023 65.9
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1221.5 982 67.3
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1220.3 1043 65.0
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1219.9 992 67.4
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1215.7 991 67.4
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1213.4 994 67.2
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1212.6 1027 65.0
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1210.3 1037 65.2
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1206.4 963 67.6
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1206.4 1063 63.5
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1198.7 983 66.3
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1195.6 992 65.6
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1194.9 970 66.7
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1190.6 982 66.6
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1190.6 989 65.9
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1190.3 968 67.1
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1190.3 985 66.2
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1189.9 966 67.3
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1189.1 982 66.3
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1187.9 966 67.5
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1187.2 967 67.3
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1186.0 990 66.2
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1184.5 967 66.7
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1182.2 1043 62.9
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1180.6 968 67.1
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1178.3 1003 65.3
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1174.8 977 65.1
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1169.1 973 66.4
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1167.1 967 65.3
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1165.2 967 65.3
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1164.1 1016 63.6
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1163.7 974 66.4
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1147.5 966 65.6
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1147.5 1006 63.1
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1144.8 993 64.1
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1138.3 1035 61.6
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1135.9 1036 62.6
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1134.8 1164 56.9
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1124.4 979 63.9
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1120.5 996 62.3
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1110.9 908 67.3
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1104.4 977 63.6
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1090.9 966 61.4
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1082.4 818 71.4
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 1.3e-311 1072.8 978 60.6
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.7e-307 1057.0 991 58.0
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 1.5e-303 1046.2 993 59.6
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 6.5e-302 1040.8 1000 58.0
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 1.9e-298 1029.2 885 64.7
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 3.7e-297 1025.0 992 58.2
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 1.1e-296 1023.5 831 67.1
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 3.1e-296 1021.9 850 67.2
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 1.7e-273 946.4 962 58.3
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 5.9e-271 937.9 974 56.3
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 8.0e-268 927.5 998 52.2
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 5.9e-263 911.4 1075 48.9
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 8.5e-262 907.5 990 53.8
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 4.4e-258 895.2 1061 50.0
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 1.2e-255 887.1 970 51.0
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 7.3e-229 798.1 762 60.0
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 6.7e-206 721.8 701 58.8
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 1.8e-203 713.8 597 64.3
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 4.3e-197 692.6 608 62.7
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 4.8e-196 689.1 786 53.4
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 3.2e-184 649.8 930 45.3
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 5.7e-181 639.0 548 65.3
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 7.4e-173 612.1 644 54.5
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.7e-164 584.3 554 59.4
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 1.3e-156 558.1 960 35.6
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 5.7e-133 479.6 389 65.8
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 1.6e-127 461.5 356 64.9
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 1.2e-122 445.3 290 79.7
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.1e-118 432.2 270 80.0
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.2e-118 429.9 304 70.1
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 6.8e-118 429.5 269 80.7
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.1e-115 422.2 276 76.8
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 1.6e-114 418.3 988 30.9
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 3.8e-108 397.1 361 58.7
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.1e-106 391.3 358 60.1
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 8.7e-105 386.0 1280 27.5
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 5.6e-104 383.3 911 31.9
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 1.2e-90 339.0 351 50.1
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.6e-80 303.5 290 54.8
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 6.2e-79 300.1 223 72.2
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 3.4e-77 294.3 168 84.5
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.0e-65 254.6 250 55.6
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.3e-64 251.1 209 60.3
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 2.4e-62 245.0 145 82.8
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 2.2e-60 238.4 206 62.1
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 5.1e-57 227.3 151 76.8
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.8e-54 218.8 144 73.6
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.1e-50 205.3 206 54.9
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.7e-47 194.5 129 72.1
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 7.7e-45 186.8 129 69.8
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 2.9e-44 184.9 238 49.6
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 3.2e-43 181.4 214 52.3
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 4.2e-43 181.0 104 83.7
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.0e-41 174.9 131 67.2
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 6.3e-39 167.2 161 57.1
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 3.1e-38 164.9 98 79.6
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 2.5e-35 155.2 122 67.2
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 3.6e-34 151.4 203 50.2
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.8e-30 139.0 101 66.3
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 4.0e-25 121.3 85 67.1
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 4.4e-24 117.9 165 40.6
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 2.3e-20 105.5 138 45.7
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 2.9e-20 105.1 85 58.8
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 3.2e-14 85.1 42 92.9
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 2.9e-07 62.0 85 49.4


User provided reference genes

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