Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08510 Brassica carinata HOM05D012303 ORTHO05D014119 3.6e-73 278.1 135 100.0
BolC4t26913H Brassica oleracea HOM05D012303 ORTHO05D014119 8.3e-62 240.4 135 88.1
BcaC01g00400 Brassica carinata HOM05D012303 ORTHO05D014119 3.2e-61 238.4 124 91.1
C04p53580 Brassica napus HOM05D012303 ORTHO05D014119 8.6e-59 230.3 135 84.4
C03p79310 Brassica napus HOM05D012303 ORTHO05D014119 3.6e-57 224.9 135 81.5
BolC3t20174H Brassica oleracea HOM05D012303 ORTHO05D014119 6.2e-57 224.2 135 81.5
BolC8t50674H Brassica oleracea HOM05D012303 ORTHO05D014119 1.8e-56 222.6 135 81.5
A09p37760 Brassica napus HOM05D012303 ORTHO05D014119 3.4e-55 218.4 136 78.7
A09p37750 Brassica napus HOM05D012303 ORTHO05D014119 4.4e-55 218.0 135 78.5
BcaC05g27014 Brassica carinata HOM05D012303 ORTHO05D014119 2.0e-52 209.1 105 95.2
C05p28810 Brassica napus HOM05D012303 ORTHO05D014119 3.0e-51 205.3 124 80.6
BraA09t40423Z Brassica rapa HOM05D012303 ORTHO05D014119 1.2e-44 183.3 113 81.4
BolC5t31598H Brassica oleracea HOM05D012303 ORTHO05D014119 1.0e-43 180.3 88 95.5
C09p30450 Brassica napus HOM05D012303 ORTHO05D014119 5.4e-37 157.9 88 86.4
BolC9t59952H Brassica oleracea HOM05D003015 ORTHO05D003733 2.4e-32 142.5 88 78.4
BraA10t45186Z Brassica rapa HOM05D003015 ORTHO05D003733 3.5e-20 102.1 65 78.5
C09p72070 Brassica napus HOM05D003015 ORTHO05D003733 1.3e-19 100.1 67 73.1
A10p31400 Brassica napus HOM05D003015 ORTHO05D003733 1.9e-18 96.3 65 75.4
AL1G17510 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 2.4e-16 89.4 79 64.6
BcaC06g32186 Brassica carinata HOM05D003015 ORTHO05D003733 1.2e-15 87.0 77 62.3
BcaC08g43441 Brassica carinata HOM05D010688 ORTHO05D010630 1.2e-15 87.0 47 89.4
BolC6t35892H Brassica oleracea HOM05D010688 ORTHO05D010630 1.2e-15 87.0 47 89.4
BcaB04g19563 Brassica carinata HOM05D010688 ORTHO05D010630 2.6e-15 85.9 47 89.4
BcaC04g23787 Brassica carinata HOM05D010688 ORTHO05D010630 2.6e-15 85.9 47 89.4
CARHR204790 Cardamine hirsuta HOM05D003015 ORTHO05D003733 3.8e-14 82.0 87 55.2
AT2G29580 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 1.1e-13 80.5 109 49.5
BcaC03g14592 Brassica carinata HOM05D010688 ORTHO05D010630 3.2e-13 79.0 47 78.7
BcaC08g44289 Brassica carinata HOM05D010688 ORTHO05D010630 3.2e-13 79.0 47 78.7
Sp4g12310 Schrenkiella parvula HOM05D003015 ORTHO05D003733 5.5e-13 78.2 109 46.8
BcaC02g11474 Brassica carinata HOM05D010688 ORTHO05D010630 3.9e-11 72.0 47 74.5
BcaC07g41437 Brassica carinata HOM05D010688 ORTHO05D010630 5.1e-11 71.6 47 74.5
AL4G24300 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 6.7e-11 71.2 107 47.7
BcaC05g28527 Brassica carinata HOM05D010688 ORTHO05D010630 6.7e-11 71.2 47 74.5
BcaB01g00392 Brassica carinata HOM05D010688 ORTHO05D010630 8.7e-11 70.9 47 72.3
BolC4t27389H Brassica oleracea HOM05D003015 ORTHO05D003733 1.1e-08 63.9 98 39.8
Thhalv10016591m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 1.4e-08 63.5 109 42.2
THA.LOC104826299 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 1.4e-08 63.5 105 43.8
AL6G17220 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 5.3e-08 61.6 99 43.4
AT1G07360 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 9.0e-08 60.8 79 53.2
BcaB02g10264 Brassica carinata HOM05D003015 ORTHO05D039340 2.0e-07 59.7 107 39.3
BolC9t56161H Brassica oleracea HOM05D022249 ORTHO05D018806 2.0e-07 59.7 38 71.1
Phvul.L002537 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 2.0e-07 59.7 100 45.0
Carub.0001s0666 Capsella rubella HOM05D003015 ORTHO05D003733 2.6e-07 59.3 80 51.2
CARHR007070 Cardamine hirsuta HOM05D003015 ORTHO05D003733 2.6e-07 59.3 78 48.7
AUR62037628 Chenopodium quinoa HOM05D003015 ORTHO05D003733 2.6e-07 59.3 97 42.3
FvH4_4g36530 Fragaria vesca HOM05D003015 ORTHO05D003733 2.6e-07 59.3 92 41.3
Prupe.2G214800 Prunus persica HOM05D003015 ORTHO05D003733 3.4e-07 58.9 89 41.6
Prupe.8G143100 Prunus persica HOM05D003015 ORTHO05D003733 3.4e-07 58.9 89 41.6
RcHm_v2.0_Chr4g0408701 Rosa chinensis HOM05D003015 ORTHO05D003733 3.4e-07 58.9 92 41.3
BcaC02g08076 Brassica carinata HOM05D003015 ORTHO05D003733 4.5e-07 58.5 91 38.5
C04p58700 Brassica napus HOM05D003015 ORTHO05D003733 4.5e-07 58.5 91 38.5
C09p33230 Brassica napus HOM05D022249 ORTHO05D018806 5.8e-07 58.2 38 68.4
THA.LOC104800716 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 5.8e-07 58.2 110 40.9
FAN12G3049 Fragaria x ananassa HOM05D003015 ORTHO05D003733 7.6e-07 57.8 92 40.2
BolC5t30855H Brassica oleracea HOM05D022249 ORTHO05D018806 1.0e-06 57.4 30 83.3
FAN22G2074 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.0e-06 57.4 92 39.1
MSTRG.5211 Avicennia marina HOM05D003015 ORTHO05D003733 1.3e-06 57.0 96 41.7
Lalb_Chr02g0153531 Lupinus albus HOM05D003015 ORTHO05D003733 1.3e-06 57.0 100 45.0
Cfa011635 Carpinus fangiana HOM05D003015 ORTHO05D003733 1.7e-06 56.6 86 44.2
CiPaw.05G153000 Carya illinoinensis HOM05D003015 ORTHO05D003733 1.7e-06 56.6 118 38.1
Haze_24240 Corylus avellana HOM05D003015 ORTHO05D003733 1.7e-06 56.6 86 44.2
Ah.04g164350 Amaranthus hybridus HOM05D003015 ORTHO05D003733 2.2e-06 56.2 96 41.7
EL10Ac4g08321 Beta vulgaris HOM05D003015 ORTHO05D003733 2.2e-06 56.2 98 39.8
CDE02G0190 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 2.9e-06 55.8 95 40.0
AUR62041065 Chenopodium quinoa HOM05D003015 ORTHO05D003733 3.8e-06 55.5 97 41.2
CSS0018492 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 4.9e-06 55.1 97 39.2
CSS0039767 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 4.9e-06 55.1 97 39.2
MD07G1175800 Malus domestica HOM05D003015 ORTHO05D003733 4.9e-06 55.1 83 41.0
Lalb_Chr06g0171271 Lupinus albus HOM05D003015 ORTHO05D003733 6.5e-06 54.7 100 45.0
BcaC01g00611 Brassica carinata HOM05D010688 ORTHO05D010630 8.4e-06 54.3 36 69.4
TAR636G2105 Trochodendron aralioides HOM05D003015 ORTHO05D003733 8.4e-06 54.3 100 37.0
VMungo0540G1143 Vigna mungo HOM05D003015 ORTHO05D003733 8.4e-06 54.3 89 43.8


User provided reference genes

Program Settings