Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 3.2e-203 711.4 343 100.0
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 3.2e-203 711.4 343 100.0
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 1.6e-202 709.1 343 99.7
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 4.7e-202 707.6 343 99.4
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 4.7e-202 707.6 343 99.4
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 2.8e-199 698.4 343 98.8
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 1.3e-191 672.9 343 94.2
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 9.1e-190 666.8 343 93.9
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 7.7e-189 663.7 344 94.2
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 2.2e-188 662.1 343 93.3
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 5.5e-187 657.5 342 92.7
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 3.8e-180 634.8 354 86.7
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 1.0e-169 600.1 342 82.7
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 7.0e-158 560.8 341 77.1
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 3.0e-156 555.4 343 77.3
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 9.5e-155 550.4 343 76.7
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.2e-154 550.1 341 75.7
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.4e-153 546.6 341 76.0
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.4e-153 546.6 341 75.7
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 1.8e-153 546.2 341 76.8
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.0e-152 542.7 341 74.8
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 3.4e-152 542.0 344 75.9
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 7.5e-152 540.8 339 74.6
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.3e-151 540.0 309 80.3
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.1e-150 537.0 322 77.0
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 5.4e-150 534.6 343 73.2
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 5.4e-150 534.6 339 74.6
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.2e-149 533.5 339 74.9
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.2e-149 533.5 346 73.1
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 2.1e-149 532.7 341 74.2
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 4.6e-149 531.6 346 74.0
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.0e-149 531.2 336 73.5
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.0e-148 530.4 340 73.8
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 2.3e-148 529.3 343 73.5
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 5.1e-148 528.1 322 76.4
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 5.1e-148 528.1 341 73.0
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 8.6e-148 527.3 331 74.0
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.1e-147 526.9 341 73.3
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.1e-147 526.9 341 73.6
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 2.5e-147 525.8 342 73.4
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.5e-147 525.8 309 79.6
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 5.6e-147 524.6 349 71.9
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.2e-146 523.5 341 71.0
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.6e-146 523.1 339 71.7
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 2.1e-146 522.7 341 73.3
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 6.2e-146 521.2 341 71.3
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 8.1e-146 520.8 339 73.7
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 2.4e-145 519.2 331 73.1
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.8e-145 517.7 331 73.1
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.8e-145 517.7 331 72.8
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.5e-144 516.5 332 71.7
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.0e-144 516.2 343 71.1
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.6e-144 515.8 341 72.1
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 4.4e-144 515.0 347 71.8
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 5.8e-144 514.6 339 72.9
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 5.8e-144 514.6 339 72.0
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 7.6e-144 514.2 340 71.2
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 7.6e-144 514.2 331 72.5
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 9.9e-144 513.8 344 71.2
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.9e-143 512.3 331 72.8
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 3.8e-143 511.9 352 69.9
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 6.4e-143 511.1 340 70.3
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 6.4e-143 511.1 341 70.7
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 6.4e-143 511.1 343 70.3
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 8.4e-143 510.8 323 75.2
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.4e-142 510.0 341 70.7
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.9e-142 509.6 331 72.5
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.9e-142 509.6 346 69.7
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 3.2e-142 508.8 332 71.4
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 7.1e-142 507.7 339 71.1
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 9.2e-142 507.3 341 71.3
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 9.2e-142 507.3 341 71.6
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 2.1e-141 506.1 341 73.0
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 2.7e-141 505.8 342 70.8
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 6.0e-141 504.6 334 69.8
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 7.8e-141 504.2 334 69.8
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 1.0e-140 503.8 308 74.7
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.0e-140 503.8 308 74.7
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 2.3e-140 502.7 339 70.8
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 6.6e-140 501.1 338 70.4
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 4.3e-139 498.4 341 68.6
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 7.3e-139 497.7 310 73.5
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.0e-137 491.9 339 69.6
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 6.9e-137 491.1 309 73.5
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.9e-137 491.1 342 69.6
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 1.5e-136 490.0 341 69.8
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 2.6e-136 489.2 335 67.5
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.4e-136 488.8 388 62.1
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 3.8e-135 485.3 319 71.2
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 8.4e-135 484.2 325 70.5
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 4.2e-134 481.9 338 67.2
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 5.4e-134 481.5 340 65.0
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.2e-133 480.3 347 66.9
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 2.1e-133 479.6 324 71.3
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.0e-133 478.0 340 66.2
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.7e-132 476.5 340 66.8
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 3.9e-132 475.3 305 73.8
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.3e-131 472.2 341 65.1
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.0e-129 465.3 321 70.4
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 2.0e-128 463.0 317 69.1
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 3.4e-128 462.2 300 71.0
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 4.5e-128 461.8 339 66.1
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.7e-127 459.9 334 67.1
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.1e-126 457.2 346 64.7
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.4e-126 456.8 320 70.6
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 5.4e-126 454.9 363 62.0
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.0e-125 451.4 341 63.3
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.3e-124 449.5 307 67.4
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.5e-123 446.8 354 63.3
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 3.3e-123 445.7 339 63.1
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.6e-122 443.4 319 65.2
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 2.4e-121 439.5 266 77.4
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 4.0e-121 438.7 321 64.2
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 1.5e-120 436.8 264 76.9
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 3.4e-120 435.6 310 64.2
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 5.8e-120 434.9 224 92.9
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 1.4e-118 430.3 341 62.2
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.9e-118 429.9 316 62.7
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.2e-117 427.2 284 68.3
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 5.1e-116 421.8 290 68.6
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 4.8e-114 415.2 246 80.1
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.1e-113 414.1 316 62.3
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.1e-113 412.5 309 63.4
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 7.9e-109 397.9 314 59.9
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 5.1e-108 395.2 288 64.6
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 4.3e-99 365.5 407 48.2
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 2.7e-93 346.3 306 58.5
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.8e-89 333.6 239 64.0
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 7.7e-88 328.2 261 61.3
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.0e-87 327.8 243 62.6
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.1e-81 306.2 246 59.8
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 7.7e-80 301.6 305 50.2
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 2.0e-72 276.9 269 53.2
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.0e-71 274.6 305 46.9
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 4.2e-70 269.2 175 73.1
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 8.0e-69 265.0 169 73.4
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 5.0e-55 219.2 179 61.5
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 8.0e-53 211.8 140 67.9
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 2.2e-50 203.8 131 71.8
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.7e-47 194.1 125 73.6
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 5.4e-33 146.0 94 73.4
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.6e-29 133.3 169 47.9
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.4e-25 120.6 66 83.3
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 2.1e-24 117.5 64 81.2
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 1.9e-22 110.9 99 52.5
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 9.6e-22 108.6 70 74.3
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.6e-16 91.3 55 74.5
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 2.7e-16 90.5 170 34.7
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 1.6e-13 81.3 198 30.3
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 2.8e-13 80.5 80 51.2
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 1.5e-11 74.7 67 50.7
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 4.5e-11 73.2 245 27.8
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 4.5e-11 73.2 184 28.3
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.1e-09 68.6 58 58.6
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 5.4e-09 66.2 213 28.2
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 5.4e-09 66.2 95 37.9
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 7.9e-08 62.4 37 83.8
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 2.3e-07 60.8 37 81.1
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 2.3e-07 60.8 154 28.6
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 3.0e-07 60.5 41 68.3
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 3.9e-07 60.1 79 44.3
EL10Ac2g04414 Beta vulgaris HOM05D002024 ORTHO05D004352 6.7e-07 59.3 156 26.3
Cfa025086 Carpinus fangiana HOM05D015906 ORTHO05D028597 1.9e-06 57.8 115 31.3
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.9e-06 57.8 42 57.1
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 2.5e-06 57.4 179 27.9
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.3e-06 57.0 153 26.1
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 4.3e-06 56.6 153 26.1
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 4.3e-06 56.6 153 26.1
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 5.6e-06 56.2 152 25.7
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 7.4e-06 55.8 152 27.0
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 7.4e-06 55.8 153 26.8
SMO351G0038 Selaginella moellendorffii HOM05D002024 ORTHO05D004352 7.4e-06 55.8 169 30.8
Psat3g086680 Pisum sativum HOM05D002024 ORTHO05D004352 9.6e-06 55.5 157 27.4


User provided reference genes

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