Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08247 Brassica carinata HOM05D004616 ORTHO05D005860 7.7e-204 713.8 408 100.0
C04p56710 Brassica napus HOM05D004616 ORTHO05D005860 5.6e-170 601.3 482 78.4
BcaB06g28144 Brassica carinata HOM05D004616 ORTHO05D005860 2.9e-158 562.4 485 74.6
BolC4t27203H Brassica oleracea HOM05D004616 ORTHO05D005860 3.2e-157 558.9 483 73.3
BraA04t17661Z Brassica rapa HOM05D004616 ORTHO05D005860 6.9e-152 541.2 507 70.8
A04p20900 Brassica napus HOM05D004616 ORTHO05D005860 7.1e-141 504.6 497 65.8
Sp4g10140 Schrenkiella parvula HOM05D004616 ORTHO05D005860 1.3e-131 473.8 516 61.4
AL4G21290 Arabidopsis lyrata HOM05D004616 ORTHO05D005860 2.4e-128 463.0 513 57.7
AT2G27350 Arabidopsis thaliana HOM05D004616 ORTHO05D005860 1.3e-126 457.2 512 60.9
Carub.0004s0797 Capsella rubella HOM05D004616 ORTHO05D005860 1.7e-126 456.8 514 57.8
BcaB02g10086 Brassica carinata HOM05D004616 ORTHO05D005860 6.5e-126 454.9 519 62.4
BcaB01g03068 Brassica carinata HOM05D004616 ORTHO05D005860 1.4e-125 453.8 515 61.6
Thhalv10001965m.g Eutrema salsugineum HOM05D004616 ORTHO05D005860 2.1e-124 449.9 464 61.4
BcaC02g10868 Brassica carinata HOM05D004616 ORTHO05D005860 1.5e-119 433.7 511 59.5
CARHR119940 Cardamine hirsuta HOM05D004616 ORTHO05D005860 4.5e-119 432.2 511 60.1
C04p24240 Brassica napus HOM05D004616 ORTHO05D005860 9.4e-117 424.5 511 59.1
BolC4t23922H Brassica oleracea HOM05D004616 ORTHO05D005860 1.8e-115 420.2 511 59.3
BraA07t29532Z Brassica rapa HOM05D004616 ORTHO05D005860 1.1e-114 417.5 443 61.2
Aa31LG5G8750 Aethionema arabicum HOM05D004616 ORTHO05D005860 4.1e-104 382.5 522 52.1
A07p18140 Brassica napus HOM05D004616 ORTHO05D005860 9.1e-104 381.3 451 57.2
THA.LOC104800519 Tarenaya hassleriana HOM05D004616 ORTHO05D005860 1.5e-101 374.0 525 49.3
THA.LOC104826435 Tarenaya hassleriana HOM05D004616 ORTHO05D005860 4.2e-101 372.5 523 52.0
CiPaw.14G098200 Carya illinoinensis HOM05D004616 ORTHO05D005860 2.4e-96 356.7 253 75.1
Haze_23351 Corylus avellana HOM05D004616 ORTHO05D005860 2.4e-96 356.7 274 71.2
Hund18773 Selenicereus undatus HOM05D004616 ORTHO05D005860 5.9e-95 352.1 246 75.2
Thecc.09G279200 Theobroma cacao HOM05D004616 ORTHO05D005860 6.5e-94 348.6 253 73.9
Cc01_g08850 Coffea canephora HOM05D004616 ORTHO05D005860 1.1e-93 347.8 254 74.0
Ah.08g223540 Amaranthus hybridus HOM05D004616 ORTHO05D005860 1.9e-93 347.1 250 73.6
Lj3g0000295 Lotus japonicus HOM05D004616 ORTHO05D005860 1.9e-93 347.1 252 73.4
CDE08G0566 Ceratophyllum demersum HOM05D004616 ORTHO05D005860 2.5e-93 346.7 257 72.0
RcHm_v2.0_Chr5g0045751 Rosa chinensis HOM05D004616 ORTHO05D005860 2.5e-93 346.7 256 72.3
Ca_01648_v3 Cicer arietinum L. HOM05D004616 ORTHO05D005860 3.2e-93 346.3 253 72.7
ECA233G2149 Erigeron canadensis HOM05D004616 ORTHO05D005860 4.2e-93 345.9 250 74.4
Manes.04G001500 Manihot esculenta HOM05D004616 ORTHO05D005860 4.2e-93 345.9 252 73.0
Cfa009990 Carpinus fangiana HOM05D004616 ORTHO05D005860 5.5e-93 345.5 251 73.3
Dinv22821 Davidia involucrata HOM05D004616 ORTHO05D005860 9.4e-93 344.7 256 71.9
EL10Ac7g16331 Beta vulgaris HOM05D004616 ORTHO05D005860 1.2e-92 344.4 250 73.6
QL01p011880 Quercus lobata HOM05D004616 ORTHO05D005860 1.2e-92 344.4 251 73.3
FvH4_3g25610 Fragaria vesca HOM05D004616 ORTHO05D005860 2.1e-92 343.6 252 72.6
HanXRQChr13g0397601 Helianthus annuus HOM05D004616 ORTHO05D005860 2.1e-92 343.6 250 74.0
Sopen11g027380 Solanum pennellii HOM05D004616 ORTHO05D005860 2.1e-92 343.6 250 72.0
Potri.009G160100 Populus trichocarpa HOM05D004616 ORTHO05D005860 2.7e-92 343.2 257 72.0
Solyc11g068660.2 Solanum lycopersicum HOM05D004616 ORTHO05D005860 3.6e-92 342.8 252 71.8
Aqoxy2G01054 Aquilegia oxysepala HOM05D004616 ORTHO05D005860 4.7e-92 342.4 256 70.7
AUR62020259 Chenopodium quinoa HOM05D004616 ORTHO05D005860 4.7e-92 342.4 271 69.0
Peaxi162Scf00224g00117 Petunia axillaris HOM05D004616 ORTHO05D005860 4.7e-92 342.4 250 72.8
Hund20933 Selenicereus undatus HOM05D004616 ORTHO05D005860 4.7e-92 342.4 255 71.8
TAR633G1321 Trochodendron aralioides HOM05D004616 ORTHO05D005860 4.7e-92 342.4 253 71.9
Glyma.11G181500 Glycine max HOM05D004616 ORTHO05D005860 1.0e-91 341.3 254 72.0
Lj3g0004055 Lotus japonicus HOM05D004616 ORTHO05D005860 1.0e-91 341.3 254 71.3
Oeu031468.1 Olea europaea HOM05D004616 ORTHO05D005860 1.0e-91 341.3 252 72.2
Gorai.006G113400 Gossypium raimondii HOM05D004616 ORTHO05D005860 1.4e-91 340.9 257 72.0
MD11G1168400 Malus domestica HOM05D004616 ORTHO05D005860 1.4e-91 340.9 252 72.2
TWI79G0721 Tripterygium wilfordii HOM05D004616 ORTHO05D005860 1.4e-91 340.9 253 71.5
Glyma.12G091600 Glycine max HOM05D004616 ORTHO05D005860 1.8e-91 340.5 254 72.0
Lj2A968G32 Lonicera japonica HOM05D004616 ORTHO05D005860 1.8e-91 340.5 262 69.5
Rhsim13G0113400 Rhododendron simsii HOM05D004616 ORTHO05D005860 2.3e-91 340.1 255 72.9
Lalb_Chr01g0004921 Lupinus albus HOM05D004616 ORTHO05D005860 3.0e-91 339.7 257 72.8
Manes.11G164000 Manihot esculenta HOM05D004616 ORTHO05D005860 3.0e-91 339.7 251 72.1
Nn6g34808 Nelumbo nucifera HOM05D004616 ORTHO05D005860 3.0e-91 339.7 255 70.6
PSO801G0782 Papaver somniferum HOM05D004616 ORTHO05D005860 4.0e-91 339.3 252 71.0
Gohir.A09G096900 Gossypium hirsutum HOM05D004616 ORTHO05D005860 5.2e-91 339.0 257 72.0
arahy.Tifrunner.gnm1.ann1.38CPMH Arachis hypogaea HOM05D004616 ORTHO05D005860 6.8e-91 338.6 264 70.5
CAN.G745.9 Capsicum annuum HOM05D004616 ORTHO05D005860 6.8e-91 338.6 250 71.2
Gohir.D09G096700 Gossypium hirsutum HOM05D004616 ORTHO05D005860 6.8e-91 338.6 257 71.6
Potri.004G196800 Populus trichocarpa HOM05D004616 ORTHO05D005860 8.8e-91 338.2 256 72.3
Actinidia24228 Actinidia chinensis HOM05D004616 ORTHO05D005860 1.2e-90 337.8 254 73.2
PSO339G4556 Papaver somniferum HOM05D004616 ORTHO05D005860 1.2e-90 337.8 252 70.6
PGSC0003DMG400026348 Solanum tuberosum HOM05D004616 ORTHO05D005860 1.2e-90 337.8 250 71.2
FAN21G3247 Fragaria x ananassa HOM05D004616 ORTHO05D005860 1.5e-90 337.4 263 70.3
FAN25G2905 Fragaria x ananassa HOM05D004616 ORTHO05D005860 2.0e-90 337.0 262 70.2
Medtr2g086780 Medicago truncatula HOM05D004616 ORTHO05D005860 2.0e-90 337.0 251 71.3
Migut.D02430 Erythranthe guttata HOM05D004616 ORTHO05D005860 2.6e-90 336.7 254 71.3
VMungo1127G2084 Vigna mungo HOM05D004616 ORTHO05D005860 2.6e-90 336.7 251 70.9
COL.COLO4_34009 Corchorus olitorius HOM05D004616 ORTHO05D005860 4.4e-90 335.9 256 69.1
MD03G1149500 Malus domestica HOM05D004616 ORTHO05D005860 4.4e-90 335.9 254 70.5
CANSAT54G1125 Cannabis sativa HOM05D004616 ORTHO05D005860 5.7e-90 335.5 255 70.2
Solyc06g074220.3 Solanum lycopersicum HOM05D004616 ORTHO05D005860 5.7e-90 335.5 255 70.2
Sopen06g030640 Solanum pennellii HOM05D004616 ORTHO05D005860 5.7e-90 335.5 255 70.2
Atru.chr3.3173 Acer truncatum HOM05D004616 ORTHO05D005860 9.8e-90 334.7 256 70.3
DCAR_012213 Daucus carota HOM05D004616 ORTHO05D005860 1.3e-89 334.3 256 69.1
PGSC0003DMG400005888 Solanum tuberosum HOM05D004616 ORTHO05D005860 1.3e-89 334.3 255 69.8
FAN16G2710 Fragaria x ananassa HOM05D004616 ORTHO05D005860 1.7e-89 334.0 263 70.3
PGR102G3030 Punica granatum HOM05D004616 ORTHO05D005860 1.7e-89 334.0 257 71.2
Dinv08937 Davidia involucrata HOM05D004616 ORTHO05D005860 2.2e-89 333.6 257 70.4
Lsat_1_v5_gn_6_38401 Lactuca sativa HOM05D004616 ORTHO05D005860 2.8e-89 333.2 250 71.2
Phvul.011G096000 Phaseolus vulgaris HOM05D004616 ORTHO05D005860 2.8e-89 333.2 251 71.7
Prupe.6G135500 Prunus persica HOM05D004616 ORTHO05D005860 2.8e-89 333.2 255 72.2
TWI75G1519 Tripterygium wilfordii HOM05D004616 ORTHO05D005860 2.8e-89 333.2 258 70.5
CSS0027671 Camellia sinensis var. sinensis HOM05D004616 ORTHO05D005860 4.8e-89 332.4 267 66.3
Sed0016133 Sechium edule HOM05D004616 ORTHO05D005860 4.8e-89 332.4 259 68.3
CSS0010321 Camellia sinensis var. sinensis HOM05D004616 ORTHO05D005860 6.3e-89 332.0 252 71.4
TAR623G1480 Trochodendron aralioides HOM05D004616 ORTHO05D005860 8.3e-89 331.6 253 71.5
MELO3C004671.2 Cucumis melo HOM05D004616 ORTHO05D005860 1.8e-88 330.5 252 69.0
HanXRQChr14g0438001 Helianthus annuus HOM05D004616 ORTHO05D005860 1.8e-88 330.5 244 70.5
Psat5g257760 Pisum sativum HOM05D004616 ORTHO05D005860 2.4e-88 330.1 252 70.2
CsaV3_1G015050 Cucumis sativus L. HOM05D004616 ORTHO05D005860 5.4e-88 328.9 252 68.7
Duzib150G0968 Durio zibethinus HOM05D004616 ORTHO05D005860 7.0e-88 328.6 254 70.5
Eucgr.B03827 Eucalyptus grandis HOM05D004616 ORTHO05D005860 7.0e-88 328.6 257 69.6
ATR0820G275 Amborella trichopoda HOM05D004616 ORTHO05D005860 9.1e-88 328.2 259 68.0
CSS0008379 Camellia sinensis var. sinensis HOM05D004616 ORTHO05D005860 9.1e-88 328.2 258 67.1
GSVIVG01036084001 Vitis vinifera HOM05D004616 ORTHO05D005860 1.2e-87 327.8 256 68.0
MSTRG.18768 Avicennia marina HOM05D004616 ORTHO05D005860 2.7e-87 326.6 256 69.1
FAN11G2307 Fragaria x ananassa HOM05D004616 ORTHO05D005860 7.7e-87 325.1 277 66.1
Actinidia07256 Actinidia chinensis HOM05D004616 ORTHO05D005860 2.3e-86 323.6 256 69.9
HPP92_001102 Vanilla planifolia HOM05D004616 ORTHO05D005860 8.6e-86 321.6 262 65.6
CAN.G919.39 Capsicum annuum HOM05D004616 ORTHO05D005860 2.5e-85 320.1 258 66.3
Zm00001eb083750 Zea mays HOM05D004616 ORTHO05D005860 3.3e-85 319.7 264 65.5
Nitab4.5_0000937g0090 Nicotiana tabacum HOM05D004616 ORTHO05D005860 4.2e-85 319.3 264 65.9
Os04g0414100 Oryza sativa ssp. japonica HOM05D004616 ORTHO05D005860 4.7e-84 315.8 261 66.3
SEGI_03435 Sequoiadendron giganteum HOM05D004616 ORTHO05D005860 8.9e-83 311.6 257 64.2
Nitab4.5_0000731g0060 Nicotiana tabacum HOM05D004616 ORTHO05D005860 1.2e-82 311.2 238 70.2
Sabra04G0133400 Salix brachista HOM05D004616 ORTHO05D005860 1.2e-82 311.2 260 68.1
Zm00001eb421980 Zea mays HOM05D004616 ORTHO05D005860 3.4e-82 309.7 262 65.3
arahy.Tifrunner.gnm1.ann1.TN2AAQ Arachis hypogaea HOM05D004616 ORTHO05D005860 1.1e-80 304.7 249 67.9
SGA_v2.0_scaffold22G09840 Striga asiatica HOM05D004616 ORTHO05D005860 3.2e-80 303.1 236 68.6
SMO361G0078 Selaginella moellendorffii HOM05D004616 ORTHO05D005860 4.1e-80 302.8 253 64.0
Nitab4.5_0005472g0060 Nicotiana tabacum HOM05D004616 ORTHO05D005860 5.4e-80 302.4 267 62.5
Nitab4.5_0008177g0040 Nicotiana tabacum HOM05D004616 ORTHO05D005860 2.7e-79 300.1 230 70.9
AUR62001524 Chenopodium quinoa HOM05D004616 ORTHO05D005860 3.5e-79 299.7 228 70.6
unitig_899.g14957 Utricularia gibba HOM05D004616 ORTHO05D005860 5.9e-79 298.9 225 68.4
TPR.G4527 Trifolium pratense HOM05D004616 ORTHO05D005860 2.3e-78 297.0 266 62.4
Mapoly0015s0108 Marchantia polymorpha HOM05D004616 ORTHO05D005860 3.9e-78 296.2 265 60.8
Pp3c7_5530 Physcomitrium patens HOM05D004616 ORTHO05D005860 6.1e-76 288.9 279 58.4
Sabra09G0125300 Salix brachista HOM05D004616 ORTHO05D005860 6.8e-75 285.4 327 53.2
SGA_v2.0_scaffold100G29603 Striga asiatica HOM05D004616 ORTHO05D005860 2.2e-73 280.4 178 80.3
CDE06G1573 Ceratophyllum demersum HOM05D004616 ORTHO05D005860 9.2e-72 275.0 254 60.6
vmacro03327 Vaccinium macrocarpon HOM05D004616 ORTHO05D005860 9.2e-72 275.0 262 61.1
Ciclev10018416m.g Citrus clementina HOM05D004616 ORTHO05D005860 3.5e-71 273.1 218 68.8
Gohir.A07G111000 Gossypium hirsutum HOM05D004616 ORTHO05D005860 1.4e-64 251.1 140 86.4
Sc06g0008700 Simmondsia chinensis HOM05D004616 ORTHO05D005860 3.5e-55 219.9 120 86.7
Peaxi162Scf00091g00076 Petunia axillaris HOM05D004616 ORTHO05D005860 1.5e-45 188.0 182 59.3
Sc12g0004600 Simmondsia chinensis HOM05D004616 ORTHO05D005860 2.5e-45 187.2 98 87.8
Duzib168G0483 Durio zibethinus HOM05D004616 ORTHO05D005860 6.0e-39 166.0 254 45.7
Duzib211G0435 Durio zibethinus HOM05D004616 ORTHO05D005860 1.3e-38 164.9 96 81.2
Psat5g173040 Pisum sativum HOM05D004616 ORTHO05D005860 2.1e-36 157.5 92 77.2
Gorai.001G123000 Gossypium raimondii HOM05D004616 ORTHO05D005860 7.6e-18 95.9 52 86.5
BcaB02g10087 Brassica carinata HOM05D004616 ORTHO05D005860 1.3e-17 95.1 207 54.6
AL128U10030 Arabidopsis lyrata HOM05D004616 ORTHO05D005860 1.8e-14 84.7 140 47.1
TAR362G0712 Trochodendron aralioides HOM05D004616 ORTHO05D007735 2.9e-09 67.4 128 40.6
SMO169G0062 Selaginella moellendorffii HOM05D004616 ORTHO05D005860 7.2e-08 62.8 121 41.3
TAR636G2188 Trochodendron aralioides HOM05D004616 ORTHO05D000385 2.3e-06 57.8 132 37.9


User provided reference genes

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