Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06481 Brassica carinata HOM05D000306 ORTHO05D005993 0.0e+00 1737.2 858 100.0
C03p14920 Brassica napus HOM05D000306 ORTHO05D005993 0.0e+00 1695.2 860 97.9
BolC3t13934H Brassica oleracea HOM05D000306 ORTHO05D005993 0.0e+00 1643.2 860 95.6
A03p12730 Brassica napus HOM05D000306 ORTHO05D005993 0.0e+00 1600.1 885 90.2
BraA03t10584Z Brassica rapa HOM05D000306 ORTHO05D005993 0.0e+00 1548.1 858 90.2
BcaB08g36111 Brassica carinata HOM05D000306 ORTHO05D005993 0.0e+00 1510.7 866 87.6
Thhalv10012677m.g Eutrema salsugineum HOM05D000306 ORTHO05D005993 0.0e+00 1484.9 868 85.6
BraA10t43578Z Brassica rapa HOM05D000306 ORTHO05D005993 0.0e+00 1478.4 868 85.9
A10p15010 Brassica napus HOM05D000306 ORTHO05D005993 0.0e+00 1474.5 868 85.7
BcaC04g19951 Brassica carinata HOM05D000306 ORTHO05D005993 0.0e+00 1468.0 868 85.8
BolC9t57799H Brassica oleracea HOM05D000306 ORTHO05D005993 0.0e+00 1457.2 868 85.3
AT5G57590 Arabidopsis thaliana HOM05D000306 ORTHO05D005993 0.0e+00 1446.0 867 84.1
AL8G33620 Arabidopsis lyrata HOM05D000306 ORTHO05D005993 0.0e+00 1445.6 869 84.0
Carub.0008s1810 Capsella rubella HOM05D000306 ORTHO05D005993 0.0e+00 1443.7 865 84.4
Aa31LG3G13440 Aethionema arabicum HOM05D000306 ORTHO05D005993 0.0e+00 1387.5 915 77.6
C09p49460 Brassica napus HOM05D000306 ORTHO05D005993 0.0e+00 1366.3 812 85.5
Sp6g19290 Schrenkiella parvula HOM05D000306 ORTHO05D005993 0.0e+00 1285.8 870 76.6
Cpa.g.sc95.64 Carica papaya HOM05D000306 ORTHO05D005993 0.0e+00 1167.1 871 68.3
Potri.006G170400 Populus trichocarpa HOM05D000306 ORTHO05D005993 0.0e+00 1155.2 865 67.4
Thecc.09G168600 Theobroma cacao HOM05D000306 ORTHO05D005993 0.0e+00 1147.5 863 68.0
QL02p097337 Quercus lobata HOM05D000306 ORTHO05D005993 0.0e+00 1144.8 870 66.8
Ciclev10007423m.g Citrus clementina HOM05D000306 ORTHO05D005993 0.0e+00 1140.6 874 66.5
Duzib150G0339 Durio zibethinus HOM05D000306 ORTHO05D005993 0.0e+00 1139.0 839 68.8
Gorai.013G246300 Gossypium raimondii HOM05D000306 ORTHO05D005993 0.0e+00 1131.7 839 68.1
CiPaw.07G190100 Carya illinoinensis HOM05D000306 ORTHO05D005993 0.0e+00 1130.9 866 67.1
Manes.06G023800 Manihot esculenta HOM05D000306 ORTHO05D005993 0.0e+00 1127.9 887 64.1
Gohir.A13G211900 Gossypium hirsutum HOM05D000306 ORTHO05D005993 0.0e+00 1124.0 839 67.6
GSVIVG01029151001 Vitis vinifera HOM05D000306 ORTHO05D005993 0.0e+00 1114.8 838 65.8
Cfa013519 Carpinus fangiana HOM05D000306 ORTHO05D005993 0.0e+00 1102.0 870 65.5
TWI34G1047 Tripterygium wilfordii HOM05D000306 ORTHO05D005993 0.0e+00 1097.4 882 63.9
Glyma.13G094700 Glycine max HOM05D000306 ORTHO05D005993 0.0e+00 1095.9 842 65.7
Rhsim01G0006800 Rhododendron simsii HOM05D000306 ORTHO05D005993 0.0e+00 1094.0 904 62.2
Lj4g0011507 Lotus japonicus HOM05D000306 ORTHO05D005993 0.0e+00 1087.4 843 65.2
Prupe.1G089300 Prunus persica HOM05D000306 ORTHO05D005993 0.0e+00 1084.3 880 63.1
VMungo1215G0493 Vigna mungo HOM05D000306 ORTHO05D005993 0.0e+00 1083.6 847 64.9
Psat4g011120 Pisum sativum HOM05D000306 ORTHO05D005993 0.0e+00 1081.6 848 65.0
Dinv41268 Davidia involucrata HOM05D000306 ORTHO05D005993 0.0e+00 1080.9 883 61.8
Ca_21207_v3 Cicer arietinum L. HOM05D000306 ORTHO05D005993 0.0e+00 1076.6 840 64.9
PGR142G2544 Punica granatum HOM05D000306 ORTHO05D005993 0.0e+00 1075.8 885 62.6
Phvul.003G147900 Phaseolus vulgaris HOM05D000306 ORTHO05D005993 0.0e+00 1075.1 843 65.1
MD13G1267300 Malus domestica HOM05D000306 ORTHO05D005993 5.9e-312 1074.3 875 62.7
Medtr4g128620 Medicago truncatula HOM05D000306 ORTHO05D005993 1.8e-311 1072.4 848 64.0
Actinidia04131 Actinidia chinensis HOM05D000306 ORTHO05D005993 1.2e-310 1069.7 877 62.4
RcHm_v2.0_Chr4g0403051 Rosa chinensis HOM05D000306 ORTHO05D005993 4.5e-310 1067.8 881 62.9
arahy.Tifrunner.gnm1.ann1.MG2J04 Arachis hypogaea HOM05D000306 ORTHO05D005993 7.6e-310 1067.0 872 63.0
TAR625G0692 Trochodendron aralioides HOM05D000306 ORTHO05D005993 1.3e-309 1066.2 894 61.5
Lalb_Chr07g0180301 Lupinus albus HOM05D000306 ORTHO05D005993 3.8e-309 1064.7 856 63.7
CANSAT11G2131 Cannabis sativa HOM05D000306 ORTHO05D005993 1.4e-308 1062.8 878 62.4
FvH4_4g09130 Fragaria vesca HOM05D000306 ORTHO05D005993 1.4e-308 1062.8 874 62.6
Sabra06G0131200 Salix brachista HOM05D000306 ORTHO05D005993 2.4e-308 1062.0 865 63.8
MELO3C017490.2 Cucumis melo HOM05D000306 ORTHO05D005993 7.8e-307 1057.0 866 62.8
HanXRQChr03g0068921 Helianthus annuus HOM05D000306 ORTHO05D005993 5.1e-306 1054.3 868 61.1
FAN17G3079 Fragaria x ananassa HOM05D000306 ORTHO05D005993 1.1e-305 1053.1 894 61.6
FAN22G2400 Fragaria x ananassa HOM05D000306 ORTHO05D005993 1.1e-305 1053.1 889 61.6
Sc14g0001190 Simmondsia chinensis HOM05D000306 ORTHO05D005993 3.3e-305 1051.6 882 62.1
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 7.3e-305 1050.4 860 62.3
ClCG06G013170 Citrullus lanatus HOM05D000306 ORTHO05D005993 1.3e-304 1049.7 882 62.2
CsaV3_1G031330 Cucumis sativus L. HOM05D000306 ORTHO05D005993 4.8e-304 1047.7 866 62.1
Sed0027913 Sechium edule HOM05D000306 ORTHO05D005993 8.1e-304 1047.0 835 63.7
PSO782G0277 Papaver somniferum HOM05D000306 ORTHO05D005993 1.8e-303 1045.8 851 61.6
PSO063G2401 Papaver somniferum HOM05D000306 ORTHO05D005993 4.0e-303 1044.6 851 61.6
Solyc07g006810.3 Solanum lycopersicum HOM05D000306 ORTHO05D005993 6.9e-303 1043.9 879 61.2
Sopen07g002910 Solanum pennellii HOM05D000306 ORTHO05D005993 9.0e-303 1043.5 871 61.3
Migut.J01457 Erythranthe guttata HOM05D000306 ORTHO05D005993 9.3e-300 1033.5 865 59.4
Lj9A687T82 Lonicera japonica HOM05D000306 ORTHO05D005993 9.3e-300 1033.5 821 63.8
Atru.chr7.720 Acer truncatum HOM05D000306 ORTHO05D005993 3.9e-298 1028.1 693 72.2
MSTRG.19696 Avicennia marina HOM05D000306 ORTHO05D005993 4.3e-297 1024.6 891 58.8
Aqoxy7G03117 Aquilegia oxysepala HOM05D000306 ORTHO05D005993 5.6e-297 1024.2 884 60.1
Nn8g40500 Nelumbo nucifera HOM05D000306 ORTHO05D005993 2.4e-295 1018.8 883 59.8
CAN.G584.9 Capsicum annuum HOM05D000306 ORTHO05D005993 9.9e-294 1013.4 972 55.6
arahy.Tifrunner.gnm1.ann1.6YA4AW Arachis hypogaea HOM05D000306 ORTHO05D005993 5.5e-292 1007.7 872 60.0
Nitab4.5_0000244g0320 Nicotiana tabacum HOM05D000306 ORTHO05D005993 2.7e-291 1005.4 880 58.5
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 1.1e-287 993.4 845 61.3
Hma1.2p1_1022F.1_g248760 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 1.7e-285 986.1 734 66.5
DCAR_009913 Daucus carota HOM05D000306 ORTHO05D005993 8.4e-285 983.8 878 59.2
TPR.G5323 Trifolium pratense HOM05D000306 ORTHO05D005993 1.4e-284 983.0 709 67.1
SHI02942 Sapria himalayana HOM05D000306 ORTHO05D005993 8.7e-282 973.8 840 60.2
Hund09018 Selenicereus undatus HOM05D000306 ORTHO05D005993 5.7e-281 971.1 828 60.0
Lsat_1_v5_gn_7_54301 Lactuca sativa HOM05D000306 ORTHO05D005993 1.6e-280 969.5 728 66.6
MBI14_g17347_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D005993 4.1e-279 964.9 885 57.2
SGA_v2.0_scaffold69G23277 Striga asiatica HOM05D000306 ORTHO05D005993 5.9e-278 961.1 930 54.4
AUR62040000 Chenopodium quinoa HOM05D000306 ORTHO05D005993 3.2e-276 955.3 824 58.3
CDE02G3177 Ceratophyllum demersum HOM05D000306 ORTHO05D005993 3.6e-275 951.8 803 60.0
unitig_749.g14164 Utricularia gibba HOM05D000306 ORTHO05D005993 7.9e-275 950.7 912 54.7
AUR62040306 Chenopodium quinoa HOM05D000306 ORTHO05D005993 1.5e-273 946.4 821 58.2
BcaC05g28220 Brassica carinata HOM05D000306 ORTHO05D005993 3.2e-268 928.7 511 89.0
Os08g0245400 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D005993 9.4e-268 927.2 851 57.0
Zm00001eb412500 Zea mays HOM05D000306 ORTHO05D005993 6.9e-263 911.0 843 56.7
C05p43000 Brassica napus HOM05D000306 ORTHO05D005993 1.3e-261 906.7 530 85.3
BcaC08g43477 Brassica carinata HOM05D000306 ORTHO05D005993 1.6e-259 899.8 523 85.3
C06p08630 Brassica napus HOM05D000306 ORTHO05D005993 1.6e-259 899.8 523 85.3
C01p37640 Brassica napus HOM05D000306 ORTHO05D005993 2.1e-259 899.4 530 84.2
BolC1t03728H Brassica oleracea HOM05D000306 ORTHO05D005993 2.7e-259 899.0 546 82.6
vmacro13109 Vaccinium macrocarpon HOM05D000306 ORTHO05D005993 5.3e-255 884.8 892 55.4
Peaxi162Scf00050g00628 Petunia axillaris HOM05D000306 ORTHO05D005993 2.2e-248 862.8 770 58.2
Pp3c17_24020 Physcomitrium patens HOM05D000306 ORTHO05D005993 7.0e-247 857.8 880 50.8
Mapoly0061s0099 Marchantia polymorpha HOM05D000306 ORTHO05D005993 4.5e-246 855.1 870 51.5
HPP92_013429 Vanilla planifolia HOM05D000306 ORTHO05D005993 7.7e-246 854.4 767 57.5
SMO146G0375 Selaginella moellendorffii HOM05D000306 ORTHO05D005993 2.2e-240 836.3 829 51.7
C09p62180 Brassica napus HOM05D000306 ORTHO05D005993 3.7e-232 808.9 511 80.4
Gohir.D13G216000 Gossypium hirsutum HOM05D000306 ORTHO05D005993 2.6e-225 786.2 557 69.3
Eucgr.C00186 Eucalyptus grandis HOM05D000306 ORTHO05D005993 7.0e-223 778.1 577 66.0
Haze_22119 Corylus avellana HOM05D000306 ORTHO05D005993 8.9e-210 734.6 653 61.4
Ah.09g229770 Amaranthus hybridus HOM05D000306 ORTHO05D005993 1.1e-204 717.6 856 47.9
CBR_g30689 Chara braunii HOM05D000306 ORTHO05D005993 4.0e-202 709.1 910 43.6
Cc06_g13480 Coffea canephora HOM05D000306 ORTHO05D005993 2.3e-197 693.3 623 57.5
CARHR271360 Cardamine hirsuta HOM05D000306 ORTHO05D005993 9.0e-186 654.8 413 80.4
Hma1.2p1_1423F.1_g282650 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 2.4e-175 620.2 523 60.6
MCO16G292 Micromonas commoda HOM05D000306 ORTHO05D005993 1.9e-172 610.5 890 41.5
EL10Ac8g18271 Beta vulgaris HOM05D000306 ORTHO05D005993 1.2e-169 601.3 628 52.1
Hma1.2p1_1022F.1_g248750 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 2.9e-168 596.7 503 61.0
Nitab4.5_0000937g0040 Nicotiana tabacum HOM05D000306 ORTHO05D005993 1.7e-160 570.9 517 58.6
BraA02t08063Z Brassica rapa HOM05D000306 ORTHO05D005993 7.2e-151 538.9 328 82.0
SalBow6G4076 Salvia bowleyana HOM05D000306 ORTHO05D005993 8.5e-144 515.4 467 58.5
BcaB01g04449 Brassica carinata HOM05D000306 ORTHO05D005993 1.5e-135 488.0 329 75.7
SEGI_35821 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 1.0e-133 481.9 495 51.9
Cre06.g277200 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D005993 4.5e-129 466.5 1022 33.4
Cfa024735 Carpinus fangiana HOM05D000306 ORTHO05D005993 1.3e-115 421.8 893 32.9
Cc06_g13470 Coffea canephora HOM05D000306 ORTHO05D005993 5.2e-93 346.7 227 68.3
Haze_22118 Corylus avellana HOM05D000306 ORTHO05D005993 7.1e-90 336.3 248 66.5
Hma1.2p1_0863F.1_g230000 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 9.9e-76 289.3 299 52.8
CSS0003956 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 1.7e-67 261.9 182 67.0
Hma1.2p1_1423F.1_g282660 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 4.9e-59 233.8 321 43.9
BcaC03g16218 Brassica carinata HOM05D000306 ORTHO05D005993 8.7e-56 223.0 138 79.7
Cfa016931 Carpinus fangiana HOM05D000306 ORTHO05D005993 1.4e-53 215.7 244 54.5
QL02p097286 Quercus lobata HOM05D000306 ORTHO05D005993 4.6e-49 200.7 142 71.1
BcaC05g25358 Brassica carinata HOM05D000306 ORTHO05D005993 6.7e-48 196.8 103 87.4
BolC5t33030H Brassica oleracea HOM05D000306 ORTHO05D005993 6.5e-43 180.3 96 90.6
CSS0029448 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 1.7e-35 155.6 90 81.1
SEGI_37083 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 1.7e-35 155.6 118 60.2
BolC2t10024H Brassica oleracea HOM05D000306 ORTHO05D005993 2.6e-31 141.7 99 72.7
CSS0007035 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 3.1e-29 134.8 256 38.3
MELO3C034648.2 Cucumis melo HOM05D000306 ORTHO05D005993 3.1e-29 134.8 115 60.9
SEGI_33461 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 1.0e-27 129.8 104 63.5
MELO3C033059.2 Cucumis melo HOM05D000306 ORTHO05D005993 2.1e-25 122.1 92 64.1
MELO3C020066.2 Cucumis melo HOM05D000306 ORTHO05D005993 3.6e-25 121.3 92 64.1
MELO3C032402.2 Cucumis melo HOM05D000306 ORTHO05D005993 2.3e-24 118.6 83 67.5
Peaxi162Scf00610g00360 Petunia axillaris HOM05D000306 ORTHO05D005993 8.8e-24 116.7 79 69.6
MELO3C033088.2 Cucumis melo HOM05D000306 ORTHO05D005993 2.6e-23 115.2 92 59.8
CSS0049760 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 9.7e-23 113.2 97 59.8
MELO3C031202.2 Cucumis melo HOM05D000306 ORTHO05D005993 7.0e-21 107.1 89 59.6
arahy.Tifrunner.gnm1.ann1.F592RX Arachis hypogaea HOM05D000306 ORTHO05D007065 3.5e-20 104.8 108 52.8
arahy.Tifrunner.gnm1.ann1.JGW43E Arachis hypogaea HOM05D000306 ORTHO05D005993 4.5e-20 104.4 213 34.3
CSS0002850 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 2.2e-19 102.1 57 78.9
CSS0028890 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 2.2e-19 102.1 57 78.9
arahy.Tifrunner.gnm1.ann1.HK2K9G Arachis hypogaea HOM05D006158 ORTHO05D007065 5.2e-16 90.9 108 48.1
arahy.Tifrunner.gnm1.ann1.S0LUWR Arachis hypogaea HOM05D000306 ORTHO05D007065 4.4e-15 87.8 53 75.5
Sopen12g002410 Solanum pennellii HOM05D003092 ORTHO05D003977 2.8e-14 85.1 297 27.3
Solyc12g006470.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 3.7e-14 84.7 297 27.3
Oeu009845.1 Olea europaea HOM05D000306 ORTHO05D005993 6.3e-14 84.0 62 66.1
Carub.0002s2695 Capsella rubella HOM05D000826 ORTHO05D004603 1.1e-13 83.2 374 24.1
A01p32960 Brassica napus HOM05D003092 ORTHO05D003977 1.4e-13 82.8 299 27.1
BcaC09g49157 Brassica carinata HOM05D003092 ORTHO05D003977 1.8e-13 82.4 299 27.1
C01p42030 Brassica napus HOM05D003092 ORTHO05D003977 1.8e-13 82.4 299 27.1
HanXRQChr14g0446441 Helianthus annuus HOM05D003092 ORTHO05D003977 1.8e-13 82.4 345 25.2
BolC1t04162H Brassica oleracea HOM05D003092 ORTHO05D003977 2.4e-13 82.0 299 27.1
BcaB04g20537 Brassica carinata HOM05D003092 ORTHO05D003977 5.3e-13 80.9 299 26.8
AL2G40850 Arabidopsis lyrata HOM05D000826 ORTHO05D004603 7.7e-12 77.0 246 26.0
PGSC0003DMG400024281 Solanum tuberosum HOM05D003092 ORTHO05D003977 7.7e-12 77.0 149 30.9
AT1G80600 Arabidopsis thaliana HOM05D000826 ORTHO05D004603 3.8e-11 74.7 225 27.1
Cfa023210 Carpinus fangiana HOM05D000826 ORTHO05D125593 5.0e-11 74.3 308 24.0
Pp3c16_23960 Physcomitrium patens HOM05D000826 ORTHO05D004603 6.5e-11 73.9 188 29.3
Aqoxy1G02396 Aquilegia oxysepala HOM05D000826 ORTHO05D004603 3.2e-10 71.6 224 28.6
Rhsim12G0188700 Rhododendron simsii HOM05D000826 ORTHO05D004603 3.2e-10 71.6 216 26.9
CSS0028993 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 2.7e-09 68.6 52 65.4
Phvul.006G002000 Phaseolus vulgaris HOM05D000826 ORTHO05D004603 2.7e-09 68.6 189 26.5
Haze_26696 Corylus avellana HOM05D000826 ORTHO05D006448 1.0e-08 66.6 289 24.6
SEGI_29053 Sequoiadendron giganteum HOM05D000826 ORTHO05D006448 1.4e-08 66.2 263 23.6
TPR.G13303 Trifolium pratense HOM05D000826 ORTHO05D006448 2.3e-08 65.5 222 25.2
PRCOL_00002709 Prasinoderma coloniale HOM05D000826 ORTHO05D006448 3.0e-08 65.1 202 22.8
Cre11.g474800 Chlamydomonas reinhardtii HOM05D000826 ORTHO05D006448 5.2e-08 64.3 143 28.7
Pp3s30_720 Physcomitrium patens HOM05D000826 ORTHO05D004603 8.8e-08 63.5 210 28.6
SMO119G0079 Selaginella moellendorffii HOM05D000826 ORTHO05D006448 1.2e-07 63.2 214 25.2
PRCOL_00000335 Prasinoderma coloniale HOM05D003092 ORTHO05D003977 1.5e-07 62.8 127 29.1
EL10Ac8g19645 Beta vulgaris HOM05D000826 ORTHO05D006448 9.8e-07 60.1 236 22.9
AagrBONN_evm.TU.Sc2ySwM_117.2020 Anthoceros agrestis HOM05D000826 ORTHO05D006448 1.3e-06 59.7 232 22.8
Pp3s30_700 Physcomitrium patens HOM05D000198 ORTHO05D018991 1.3e-06 59.7 176 29.0
DCAR_007881 Daucus carota HOM05D000826 ORTHO05D006448 1.7e-06 59.3 224 22.8
arahy.Tifrunner.gnm1.ann1.EEM62Q Arachis hypogaea HOM05D002203 ORTHO05D007065 2.2e-06 58.9 38 71.1
Os03g0643300 Oryza sativa ssp. japonica HOM05D000826 ORTHO05D006448 2.2e-06 58.9 217 22.6
arahy.Tifrunner.gnm1.ann1.RYD0NS Arachis hypogaea HOM05D000129 ORTHO05D017460 6.3e-06 57.4 40 65.0
arahy.Tifrunner.gnm1.ann1.9D3V7N Arachis hypogaea HOM05D000129 ORTHO05D017460 8.3e-06 57.0 41 63.4
Mapoly0003s0017 Marchantia polymorpha HOM05D000826 ORTHO05D006448 8.3e-06 57.0 233 23.2


User provided reference genes

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