Gene: Carub.0002s2695
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0002s2695
- Transcript Identifier Carub.0002s2695.1
- Gene Type Coding gene
- Location scaffold_2 : 13809569-13811732 : positive
Gene Family Information
- ID HOM05D000826
- #Genes/#Species 720/100
- Phylogenetic origin
- ID ORTHO05D004603
- #Genes/#Species 176/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Carub.0002s2695.v1.1
- pacid 39243764
- synonym Carubv10020266m.g
Descriptions
- Description 2.6.1.11 - Acetylornithine transaminase / Succinylornithine aminotransferase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006525 | IEA | InterPro | arginine metabolic process | |
| GO:0048364 | ISO | PLAZA Integrative Orthology | root development | AT1G80600 |
| GO:0006526 | ISO | PLAZA Integrative Orthology | arginine biosynthetic process | AT1G80600 |
| GO:0080022 | ISO | PLAZA Integrative Orthology | primary root development | AT1G80600 |
| GO:0042742 | ISO | PLAZA Integrative Orthology | defense response to bacterium | AT1G80600 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008483 | IEA | InterPro | transaminase activity | |
| GO:0030170 | IEA | InterPro | pyridoxal phosphate binding | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G80600 |
| GO:0005507 | ISO | PLAZA Integrative Orthology | copper ion binding | AT1G80600 |
| GO:0003992 | ISO | PLAZA Integrative Orthology | N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity | AT1G80600 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT1G80600 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT1G80600 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005814 | Aminotransferase class-III |
| IPR015421 | Pyridoxal phosphate-dependent transferase, major domain |
| IPR015424 | Pyridoxal phosphate-dependent transferase |
| IPR015422 | Pyridoxal phosphate-dependent transferase, small domain |
| IPR004636 | Acetylornithine/Succinylornithine transaminase family |
| Mapman id | Description |
|---|---|
| 4.1.1.1.1.4 | Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.ornithine.N2-acetylornithine aminotransferase |