Gene: Sopen12g002410

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g002410
  • Transcript Identifier Sopen12g002410.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 1047117-1053190 : positive

Gene Family Information

  • ID HOM05D003092
  • #Genes/#Species 222/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g002410.1

Descriptions

  • Description Genetically redundant with POP3, mediates pollen tube guidance. Double mutants are self sterile | gamma-aminobutyrate transaminase subunit precursor | nuclear gene for mitochondrial product. Encodes gamma-aminobutyrate transaminase that uses pyruvate instead of alpha-ketoglutarate as cosubstrate. Mutations in POP2/HER1 render roots resistant to the inhibitory growth effects of the volatile organic compound E-2-hexenal implicated in plant defense. | POLLEN-PISTIL INCOMPATIBILITY 2 (POP2) | CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain , Aminotransferase class-III , Pyridoxal phosphate-dependent transferase, major region, subdomain 1 | BEST Arabidopsis thaliana protein match is: HOPW1-1-interacting 1 ., Aminotransferase class-III, Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor (EC 5.4.3.8) (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) - Glycine max (Soybean)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009865
ISO
PLAZA Integrative Orthologypollen tube adhesion AT3G22200
GO:0005985
ISO
PLAZA Integrative Orthologysucrose metabolic process AT3G22200
GO:0009943
ISO
PLAZA Integrative Orthologyadaxial/abaxial axis specification AT3G22200
GO:0009448
ISO
PLAZA Integrative Orthologygamma-aminobutyric acid metabolic process Solyc12g006470.2
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT3G22200
GO:0009860
ISO
PLAZA Integrative Orthologypollen tube growth AT3G22200
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development AT3G22200
GO:0010033
ISO
PLAZA Integrative Orthologyresponse to organic substance AT3G22200
GO:0019484
ISO
PLAZA Integrative Orthologybeta-alanine catabolic process AT3G22200
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT3G22200
GO:0048367
ISO
PLAZA Integrative Orthologyshoot system development AT3G22200
GO:0006536
ISO
PLAZA Integrative Orthologyglutamate metabolic process AT3G22200
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT3G22200
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT3G22200
GO:0006105
ISO
PLAZA Integrative Orthologysuccinate metabolic process AT3G22200
GO:0006540
ISO
PLAZA Integrative Orthologyglutamate decarboxylation to succinate AT3G22200
GO:0006541
ISO
PLAZA Integrative Orthologyglutamine metabolic process AT3G22200
GO:0009450
ISO
PLAZA Integrative Orthologygamma-aminobutyric acid catabolic process AT3G22200
GO:0010183
ISO
PLAZA Integrative Orthologypollen tube guidance AT3G22200
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT3G22200
GO:0006020
ISO
PLAZA Integrative Orthologyinositol metabolic process AT3G22200

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003867
ISO
PLAZA Integrative Orthology4-aminobutyrate transaminase activity Solyc12g006470.2
GO:0034387
ISO
PLAZA Integrative Orthology4-aminobutyrate:pyruvate transaminase activity AT3G22200
GO:0008270
ISO
PLAZA Integrative Orthologyzinc ion binding AT3G22200
GO:0050897
ISO
PLAZA Integrative Orthologycobalt ion binding AT3G22200
GO:0008483
IEA
InterProtransaminase activity
GO:0003824
IEA
InterProcatalytic activity
GO:0030170
IEA
InterPropyridoxal phosphate binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT3G22200
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT3G22200
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT3G22200

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005814 Aminotransferase class-III
IPR015424 Pyridoxal phosphate-dependent transferase
IPR015422 Pyridoxal phosphate-dependent transferase, small domain
IPR015421 Pyridoxal phosphate-dependent transferase, major domain
Mapman id Description
4.2.2.1 Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).gamma-aminobutyric acid pyruvate transaminase