Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 0.0e+00 3070.0 1610 100.0
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 0.0e+00 2947.1 1610 96.6
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 0.0e+00 2912.1 1680 92.5
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 0.0e+00 2890.5 1610 95.0
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 0.0e+00 2860.9 1674 91.4
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 0.0e+00 2630.1 1620 87.5
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 0.0e+00 2365.9 1631 77.1
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 0.0e+00 2262.6 1634 74.8
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 0.0e+00 2198.7 1634 74.1
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 0.0e+00 2196.0 1671 72.6
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 0.0e+00 2176.4 1629 73.6
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 0.0e+00 2164.8 1638 71.9
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 0.0e+00 2111.6 1635 70.8
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 0.0e+00 1890.5 1636 65.1
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 0.0e+00 1503.8 1655 55.3
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 1.8e-267 927.2 1672 38.5
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 7.4e-266 921.8 1657 38.7
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 8.5e-254 881.7 1659 37.9
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 1.6e-252 877.5 1674 37.6
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 2.7e-252 876.7 1481 39.4
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 6.9e-248 862.1 1768 35.9
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 9.1e-248 861.7 1668 38.0
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 9.7e-242 841.6 1750 35.8
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 6.7e-235 818.9 1729 35.6
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 4.4e-226 789.6 1435 38.0
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 5.7e-226 789.3 1692 35.3
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 9.8e-226 788.5 1667 35.4
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 3.7e-225 786.6 1603 36.4
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 1.5e-218 764.6 1677 35.9
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 2.7e-215 753.8 1657 34.3
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 1.2e-212 745.0 1615 34.9
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 1.6e-212 744.6 1697 34.6
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 5.7e-210 736.1 1650 34.2
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 4.9e-209 733.0 1716 34.3
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 4.9e-209 733.0 1666 34.1
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 9.2e-208 728.8 1657 34.6
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 6.6e-206 722.6 1703 34.0
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 2.5e-205 720.7 1644 34.5
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 2.1e-204 717.6 1714 33.6
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 4.4e-202 709.9 1724 32.5
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 2.3e-190 671.0 1617 34.4
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 3.0e-190 670.6 1694 32.7
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 5.6e-189 666.4 1762 32.1
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 5.8e-186 656.4 1692 32.7
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 6.0e-183 646.4 1595 33.4
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 6.6e-182 642.9 1685 32.1
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 1.1e-181 642.1 1500 34.0
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 2.5e-181 641.0 1688 32.1
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.1e-179 635.6 1686 32.5
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 5.4e-176 623.2 1509 33.7
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 9.3e-176 622.5 1690 32.2
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.6e-175 621.7 1149 38.9
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 2.1e-172 611.3 1165 38.2
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 4.8e-172 610.1 1664 31.6
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 2.6e-170 604.4 1512 32.4
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 4.5e-170 603.6 1665 30.9
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 3.8e-169 600.5 1647 31.7
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 1.1e-168 599.0 1740 30.2
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 3.2e-168 597.4 1628 30.9
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 1.6e-167 595.1 1662 30.9
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.0e-166 590.9 1661 30.5
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 3.0e-166 590.9 1687 30.9
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 5.1e-166 590.1 1644 31.8
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.4e-162 577.4 1667 30.5
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.1e-159 568.2 1684 30.0
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 1.0e-158 565.8 1722 30.7
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.0e-154 551.6 1736 29.5
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 3.8e-153 547.4 1701 31.0
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 1.0e-150 539.3 1663 30.4
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 1.9e-149 535.0 1652 30.1
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.1e-147 529.3 1668 29.3
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 1.3e-145 522.3 798 43.6
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 5.0e-129 467.2 830 39.2
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 7.2e-128 463.4 1083 33.2
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 7.4e-125 453.4 763 40.9
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.8e-121 441.0 1248 31.0
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 2.2e-116 425.2 1635 27.9
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 3.7e-116 424.5 1430 29.2
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 2.5e-112 411.8 1663 27.5
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 6.8e-110 403.7 1699 26.4
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 6.8e-110 403.7 1705 26.5
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 4.4e-109 401.0 860 34.4
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 6.3e-108 397.1 1809 27.0
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 4.2e-104 384.4 1844 26.7
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 6.1e-103 380.6 1655 26.6
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 1.5e-101 375.9 1660 25.8
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 7.5e-101 373.6 993 32.4
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 1.7e-100 372.5 698 36.4
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 2.4e-99 368.6 1674 26.0
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 2.3e-97 362.1 1541 26.4
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 5.6e-96 357.5 1595 26.2
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 2.3e-94 352.1 666 38.4
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 5.2e-94 350.9 712 37.9
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 1.1e-91 343.2 730 37.3
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 4.1e-91 341.3 691 37.6
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 1.2e-90 339.7 686 35.7
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 2.0e-90 339.0 727 36.7
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 1.2e-82 313.2 631 35.0
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 2.5e-80 305.4 785 34.3
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 1.6e-74 286.2 753 31.9
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 2.7e-74 285.4 816 30.0
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.3e-65 256.5 518 35.9
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 5.6e-48 198.0 617 31.8
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 1.7e-44 186.4 453 31.8
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 1.2e-42 180.3 513 30.4
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 1.3e-39 170.2 234 41.5
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 2.1e-39 169.5 766 25.6
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 2.6e-37 162.5 604 28.8
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 2.3e-33 149.4 131 58.8
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 1.7e-28 133.3 240 35.0
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 5.7e-24 118.2 304 32.9
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 5.7e-24 118.2 215 35.8
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 8.2e-23 114.4 228 33.3
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 3.8e-20 105.5 103 55.3
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.2e-18 100.5 282 30.9
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 1.1e-11 77.4 220 30.0
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.2e-11 74.7 100 46.0
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 1.2e-10 73.9 230 30.9
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 1.2e-10 73.9 626 21.4
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 1.6e-10 73.6 83 49.4
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.6e-10 73.6 83 49.4
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.7e-10 72.0 82 47.6
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 5.2e-09 68.6 160 33.1
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 7.4e-08 64.7 159 35.2
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 1.4e-06 60.5 154 28.6
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 3.1e-06 59.3 79 44.3
AagrBONN_evm.TU.Sc2ySwM_117.1752 Anthoceros agrestis HOM05D005579 ORTHO05D006775 5.3e-06 58.5 208 29.3


User provided reference genes

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