Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05443 Brassica carinata HOM05D000228 ORTHO05D004880 4.7e-149 531.2 267 100.0
BcaB01g03594 Brassica carinata HOM05D000228 ORTHO05D004880 5.8e-99 364.8 312 67.9
BcaC01g05442 Brassica carinata HOM05D000228 ORTHO05D004880 7.5e-99 364.4 312 67.9
A03p22490 Brassica napus HOM05D000228 ORTHO05D004880 7.5e-99 364.4 312 67.9
C03p26640 Brassica napus HOM05D000228 ORTHO05D004880 7.5e-99 364.4 312 67.9
BolC3t15049H Brassica oleracea HOM05D000228 ORTHO05D004880 7.5e-99 364.4 312 67.9
BraA03t11476Z Brassica rapa HOM05D000228 ORTHO05D004880 7.5e-99 364.4 312 67.9
Sp4g22340 Schrenkiella parvula HOM05D000228 ORTHO05D004880 6.2e-93 344.7 312 65.1
Thhalv10016128m.g Eutrema salsugineum HOM05D000228 ORTHO05D004880 5.8e-91 338.2 312 63.5
Carub.0004s2219 Capsella rubella HOM05D000228 ORTHO05D004880 3.0e-87 325.9 311 61.7
BcaB02g09059 Brassica carinata HOM05D000228 ORTHO05D004880 6.6e-87 324.7 313 61.0
AT2G40030 Arabidopsis thaliana HOM05D000228 ORTHO05D004880 2.8e-85 319.3 311 60.5
Aa31LG5G19570 Aethionema arabicum HOM05D000228 ORTHO05D004880 6.2e-85 318.2 312 59.9
AL4G37670 Arabidopsis lyrata HOM05D000228 ORTHO05D004880 4.0e-84 315.5 304 60.2
CARHR134990 Cardamine hirsuta HOM05D000228 ORTHO05D004880 7.3e-78 294.7 310 56.8
THA.LOC104809820 Tarenaya hassleriana HOM05D000228 ORTHO05D004880 3.9e-71 272.3 320 53.4
Cpa.g.sc271.2 Carica papaya HOM05D000228 ORTHO05D004880 1.3e-53 214.2 307 45.0
Dinv22035 Davidia involucrata HOM05D000228 ORTHO05D004880 2.2e-50 203.4 307 43.0
Gorai.010G216600 Gossypium raimondii HOM05D000228 ORTHO05D004880 8.4e-50 201.4 308 42.9
Gohir.D06G185200 Gossypium hirsutum HOM05D000228 ORTHO05D004880 1.9e-49 200.3 308 42.5
Gohir.A06G175400 Gossypium hirsutum HOM05D000228 ORTHO05D004880 4.2e-49 199.1 308 42.5
Atru.chr12.1341 Acer truncatum HOM05D000228 ORTHO05D004880 9.3e-49 198.0 307 41.7
Duzib114G0608 Durio zibethinus HOM05D000228 ORTHO05D004880 9.3e-49 198.0 315 43.2
Thecc.10G157200 Theobroma cacao HOM05D000228 ORTHO05D004880 3.5e-48 196.1 308 42.5
CSS0032728 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D004880 7.9e-48 194.9 305 42.0
Haze_03043 Corylus avellana HOM05D000228 ORTHO05D004880 6.7e-47 191.8 315 41.3
Cc02_g30260 Coffea canephora HOM05D000228 ORTHO05D004880 8.7e-47 191.4 306 39.5
FAN10G2682 Fragaria x ananassa HOM05D000228 ORTHO05D004880 8.7e-47 191.4 315 40.0
FAN01G1291 Fragaria x ananassa HOM05D000228 ORTHO05D004880 1.1e-46 191.0 315 39.7
GSVIVG01013491001 Vitis vinifera HOM05D000228 ORTHO05D004880 1.5e-46 190.7 310 40.6
CiPaw.13G013500 Carya illinoinensis HOM05D000228 ORTHO05D004880 1.9e-46 190.3 238 48.7
ClCG01G007520 Citrullus lanatus HOM05D000228 ORTHO05D004880 2.5e-46 189.9 309 40.8
Sed0021971 Sechium edule HOM05D000228 ORTHO05D004880 2.5e-46 189.9 315 40.3
FvH4_7g03040 Fragaria vesca HOM05D000228 ORTHO05D004880 3.3e-46 189.5 315 39.7
FAN06G4504 Fragaria x ananassa HOM05D000228 ORTHO05D004880 3.3e-46 189.5 315 39.7
Manes.04G159600 Manihot esculenta HOM05D000228 ORTHO05D004880 3.3e-46 189.5 315 40.6
FAN03G2523 Fragaria x ananassa HOM05D000228 ORTHO05D004880 4.3e-46 189.1 315 39.7
Hma1.2p1_1202F.1_g266790 Hydrangea macrophylla HOM05D000228 ORTHO05D004880 4.3e-46 189.1 306 40.8
Prupe.2G035500 Prunus persica HOM05D000228 ORTHO05D004880 5.7e-46 188.7 314 41.4
Ciclev10004129m.g Citrus clementina HOM05D000228 ORTHO05D004880 7.4e-46 188.3 310 41.0
COL.COLO4_20753 Corchorus olitorius HOM05D000228 ORTHO05D004880 7.4e-46 188.3 313 41.5
CANSAT56G3974 Cannabis sativa HOM05D000228 ORTHO05D004880 1.6e-45 187.2 321 39.3
vmacro12694 Vaccinium macrocarpon HOM05D000228 ORTHO05D004880 1.6e-45 187.2 305 39.7
PSO782G2240 Papaver somniferum HOM05D000228 ORTHO05D004880 4.8e-45 185.7 309 37.2
MELO3C005153.2 Cucumis melo HOM05D000228 ORTHO05D004880 6.3e-45 185.3 309 39.5
CsaV3_5G024490 Cucumis sativus L. HOM05D000228 ORTHO05D004880 6.3e-45 185.3 309 39.5
Ca_23957_v3 Cicer arietinum L. HOM05D000228 ORTHO05D004880 1.4e-44 184.1 314 39.5
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 1.4e-44 184.1 314 39.5
MD02G1287600 Malus domestica HOM05D000228 ORTHO05D004880 3.1e-44 183.0 314 39.5
RcHm_v2.0_Chr1g0324091 Rosa chinensis HOM05D000228 ORTHO05D004880 3.1e-44 183.0 239 45.2
MD07G1039700 Malus domestica HOM05D000228 ORTHO05D004880 4.1e-44 182.6 313 39.9
EL10Ac2g02803 Beta vulgaris HOM05D000228 ORTHO05D004880 6.9e-44 181.8 308 39.9
TAR626G0081 Trochodendron aralioides HOM05D000228 ORTHO05D004880 6.9e-44 181.8 241 44.0
Glyma.15G235900 Glycine max HOM05D000228 ORTHO05D004880 9.0e-44 181.4 314 40.4
Lalb_Chr01g0007761 Lupinus albus HOM05D000228 ORTHO05D004880 1.2e-43 181.0 311 38.3
PSO063G0693 Papaver somniferum HOM05D000228 ORTHO05D004880 1.2e-43 181.0 309 36.9
Potri.003G196900 Populus trichocarpa HOM05D000228 ORTHO05D004880 1.2e-43 181.0 308 39.6
Sc11g0006440 Simmondsia chinensis HOM05D000228 ORTHO05D004880 1.2e-43 181.0 307 37.1
AUR62026863 Chenopodium quinoa HOM05D000228 ORTHO05D004880 1.5e-43 180.6 313 38.7
AUR62032652 Chenopodium quinoa HOM05D000228 ORTHO05D004880 1.5e-43 180.6 306 38.2
Psat4g144400 Pisum sativum HOM05D000228 ORTHO05D004880 2.0e-43 180.3 314 39.2
Hund27778 Selenicereus undatus HOM05D000228 ORTHO05D004880 2.0e-43 180.3 301 39.2
Hund27781 Selenicereus undatus HOM05D000228 ORTHO05D004880 2.0e-43 180.3 301 39.2
Medtr8g038990 Medicago truncatula HOM05D000228 ORTHO05D004880 2.6e-43 179.9 314 39.5
Sabra03G0146600 Salix brachista HOM05D000228 ORTHO05D004880 3.4e-43 179.5 308 38.6
SalBow5G3376 Salvia bowleyana HOM05D000228 ORTHO05D004880 7.7e-43 178.3 314 38.9
TPR.G25078 Trifolium pratense HOM05D000228 ORTHO05D004880 7.7e-43 178.3 238 46.6
VMungo1127G1028 Vigna mungo HOM05D000228 ORTHO05D004880 1.7e-42 177.2 311 40.5
Sed0005526 Sechium edule HOM05D000228 ORTHO05D004880 2.2e-42 176.8 228 45.6
TWI38G1715 Tripterygium wilfordii HOM05D000228 ORTHO05D004880 2.2e-42 176.8 312 39.1
DCAR_022342 Daucus carota HOM05D000228 ORTHO05D004880 2.9e-42 176.4 239 44.4
Phvul.011G206900 Phaseolus vulgaris HOM05D000228 ORTHO05D004880 3.8e-42 176.0 304 39.8
SalBow5G5050 Salvia bowleyana HOM05D000228 ORTHO05D004880 3.8e-42 176.0 306 38.6
Solyc01g096390.4 Solanum lycopersicum HOM05D000228 ORTHO05D004880 3.8e-42 176.0 306 39.9
Sopen01g040120 Solanum pennellii HOM05D000228 ORTHO05D004880 3.8e-42 176.0 306 39.9
Nn6g31494 Nelumbo nucifera HOM05D000228 ORTHO05D004880 5.0e-42 175.6 241 43.6
SGA_v2.0_scaffold124G33613 Striga asiatica HOM05D000228 ORTHO05D004880 5.0e-42 175.6 229 46.3
Lj7A585G29 Lonicera japonica HOM05D000228 ORTHO05D004880 6.5e-42 175.3 237 44.7
Potri.001G027232 Populus trichocarpa HOM05D000228 ORTHO05D004880 8.5e-42 174.9 239 45.2
unitig_0.g1386 Utricularia gibba HOM05D000228 ORTHO05D004880 1.4e-41 174.1 229 44.1
Ah.10g030570 Amaranthus hybridus HOM05D000228 ORTHO05D004880 1.9e-41 173.7 305 37.7
CAN.G1045.38 Capsicum annuum HOM05D000228 ORTHO05D004880 2.5e-41 173.3 306 39.2
Ah.10g030560 Amaranthus hybridus HOM05D000228 ORTHO05D004880 3.2e-41 172.9 305 37.7
Glyma.13G196900 Glycine max HOM05D000228 ORTHO05D004880 3.2e-41 172.9 314 39.5
Migut.B01227 Erythranthe guttata HOM05D000228 ORTHO05D004880 5.5e-41 172.2 229 45.9
Actinidia21520 Actinidia chinensis HOM05D000228 ORTHO05D004880 1.6e-40 170.6 312 38.5
Aqoxy7G04198 Aquilegia oxysepala HOM05D000228 ORTHO05D004880 1.6e-40 170.6 315 37.1
arahy.Tifrunner.gnm1.ann1.K566NY Arachis hypogaea HOM05D000228 ORTHO05D004880 1.6e-40 170.6 314 38.2
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 2.1e-40 170.2 306 36.9
Peaxi162Scf00767g00417 Petunia axillaris HOM05D000228 ORTHO05D004880 2.7e-40 169.9 306 36.6
Eucgr.J01182 Eucalyptus grandis HOM05D000228 ORTHO05D004880 3.6e-40 169.5 239 42.3
arahy.Tifrunner.gnm1.ann1.50BPU8 Arachis hypogaea HOM05D000228 ORTHO05D004880 6.1e-40 168.7 314 37.9
Oeu038177.1 Olea europaea HOM05D000228 ORTHO05D004880 6.1e-40 168.7 229 44.5
Lalb_Chr03g0032731 Lupinus albus HOM05D000228 ORTHO05D004880 1.4e-39 167.5 236 42.4
TWI15G0020 Tripterygium wilfordii HOM05D000228 ORTHO05D004880 6.7e-39 165.2 304 37.8
HPP92_010995 Vanilla planifolia HOM05D000228 ORTHO05D004880 6.7e-39 165.2 315 34.9
PGR044G0122 Punica granatum HOM05D000228 ORTHO05D004880 1.1e-38 164.5 236 42.4
HanXRQChr15g0481481 Helianthus annuus HOM05D000228 ORTHO05D004880 4.3e-38 162.5 302 35.8
ECA236G0597 Erigeron canadensis HOM05D000228 ORTHO05D004880 5.7e-38 162.2 303 37.3
Aqoxy6G01013 Aquilegia oxysepala HOM05D000228 ORTHO05D004880 4.8e-37 159.1 227 41.9
HanXRQChr01g0022531 Helianthus annuus HOM05D000228 ORTHO05D004880 6.3e-37 158.7 306 35.6
Lj3g0014961 Lotus japonicus HOM05D000228 ORTHO05D004880 1.4e-36 157.5 241 41.1
Lj3g0006268 Lotus japonicus HOM05D000228 ORTHO05D004880 3.1e-36 156.4 241 40.2
TPR.G27818 Trifolium pratense HOM05D000228 ORTHO05D004880 5.0e-34 149.1 288 37.2
Rhsim01G0124000 Rhododendron simsii HOM05D000228 ORTHO05D004880 9.4e-33 144.8 260 37.3
Lj4P514T6 Lonicera japonica HOM05D000228 ORTHO05D004880 7.9e-32 141.7 219 41.6
CDE02G4035 Ceratophyllum demersum HOM05D000228 ORTHO05D004880 1.8e-31 140.6 274 36.5
Zm00001eb207920 Zea mays HOM05D000228 ORTHO05D004880 7.4e-30 135.2 240 38.3
MBI09_g32567_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 4.0e-23 112.8 206 39.3
MBI06_g38706_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 1.5e-22 110.9 258 34.9
Zm00001eb119350 Zea mays HOM05D000228 ORTHO05D004880 5.3e-20 102.4 222 33.3
Os01g0965000 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D004880 1.2e-19 101.3 294 30.3
MBI06_g43576_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 2.0e-19 100.5 149 43.0
SEGI_18016 Sequoiadendron giganteum HOM05D000228 ORTHO05D004880 6.1e-16 89.0 234 31.2
MBI15_g20025_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 1.8e-15 87.4 187 36.4
Lj3C124T2 Lonicera japonica HOM05D000228 ORTHO05D004880 1.3e-13 81.3 167 36.5
SEGI_22706 Sequoiadendron giganteum HOM05D000228 ORTHO05D004880 1.7e-13 80.9 258 27.5
MBI18_g06811_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 4.8e-13 79.3 124 40.3
SEGI_40451 Sequoiadendron giganteum HOM05D000228 ORTHO05D004880 1.1e-12 78.2 224 28.1
MBI19_g40205_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 1.6e-11 74.3 119 39.5
MBI10_g12844_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 2.7e-11 73.6 102 45.1
Nitab4.5_0000307g0250 Nicotiana tabacum HOM05D000228 ORTHO05D004880 7.7e-11 72.0 124 36.3
Nitab4.5_0004955g0050 Nicotiana tabacum HOM05D000228 ORTHO05D004880 6.5e-10 68.9 55 60.0
Mapoly0104s0044 Marchantia polymorpha HOM05D000228 ORTHO05D006129 9.8e-06 55.1 61 45.9
RhsimUnG0140000 Rhododendron simsii HOM05D000228 ORTHO05D030537 9.8e-06 55.1 49 55.1


User provided reference genes

Program Settings