Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 8.8e-309 1062.8 526 100.0
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 1.7e-288 995.3 566 89.8
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 1.7e-288 995.3 566 89.8
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 7.2e-287 989.9 566 89.0
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 7.2e-287 989.9 566 89.0
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.0e-285 986.1 566 88.7
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 1.0e-285 986.1 566 88.5
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 2.3e-285 984.9 566 88.3
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 2.3e-285 984.9 567 88.9
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 5.2e-285 983.8 564 88.7
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 3.7e-283 977.6 567 88.4
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 1.2e-278 962.6 566 86.2
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 2.0e-276 955.3 566 85.3
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.7e-272 942.2 566 84.1
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 7.2e-271 936.8 566 83.6
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 3.4e-268 927.9 566 83.0
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 7.5e-268 926.8 566 83.0
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 9.8e-268 926.4 566 82.7
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 1.7e-267 925.6 564 82.8
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.8e-267 924.9 566 82.7
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 2.8e-267 924.9 566 83.0
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 4.9e-267 924.1 564 82.3
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 8.3e-267 923.3 566 82.3
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 8.3e-267 923.3 564 82.6
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 8.3e-267 923.3 563 81.9
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 1.1e-266 922.9 566 82.2
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 4.1e-266 921.0 564 82.3
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 5.4e-266 920.6 566 82.5
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 5.4e-266 920.6 563 81.7
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 9.2e-266 919.8 565 81.9
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 1.2e-265 919.5 564 82.4
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 1.2e-265 919.5 567 81.8
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.0e-265 918.7 568 81.7
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 3.5e-265 917.9 566 82.2
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 4.5e-265 917.5 564 82.1
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 5.9e-265 917.1 564 82.3
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 5.9e-265 917.1 566 82.0
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 7.8e-265 916.8 566 81.8
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 7.8e-265 916.8 566 81.8
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 7.8e-265 916.8 563 82.2
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.0e-264 916.4 564 82.3
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 1.0e-264 916.4 563 82.1
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 1.3e-264 916.0 557 82.6
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 1.7e-264 915.6 555 82.7
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 2.3e-264 915.2 566 81.6
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 2.3e-264 915.2 568 81.7
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 2.9e-264 914.8 566 81.6
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 3.9e-264 914.4 566 81.4
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.9e-264 914.4 566 81.4
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 3.9e-264 914.4 564 81.7
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 3.9e-264 914.4 566 82.2
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 5.0e-264 914.1 563 81.7
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 5.0e-264 914.1 564 81.9
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 8.6e-264 913.3 567 81.8
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 8.6e-264 913.3 566 81.6
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 8.6e-264 913.3 566 81.8
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 1.1e-263 912.9 563 81.2
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 1.9e-263 912.1 562 81.5
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 2.5e-263 911.8 564 81.2
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 2.5e-263 911.8 564 81.0
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 2.5e-263 911.8 556 82.6
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 3.3e-263 911.4 566 81.3
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 4.3e-263 911.0 556 81.5
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 9.5e-263 909.8 566 81.1
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 1.2e-262 909.4 555 82.0
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 1.6e-262 909.1 564 81.0
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 2.8e-262 908.3 556 81.7
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.6e-262 907.9 598 78.3
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 6.1e-262 907.1 564 81.0
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.0e-261 906.4 554 82.5
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 1.8e-261 905.6 564 80.9
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 3.1e-261 904.8 578 79.4
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 5.2e-261 904.0 564 81.6
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 5.2e-261 904.0 566 81.1
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 1.5e-260 902.5 566 80.6
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 3.4e-260 901.4 564 80.5
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.7e-259 899.0 565 80.9
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 3.5e-257 891.3 619 74.6
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 3.5e-257 891.3 564 80.3
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 8.6e-256 886.7 600 75.8
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 1.1e-255 886.3 554 80.0
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 3.3e-255 884.8 569 79.1
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 4.3e-255 884.4 570 78.9
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 4.7e-254 880.9 554 80.5
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 8.0e-254 880.2 564 80.1
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 1.4e-253 879.4 596 76.3
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 2.6e-252 875.2 523 85.9
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 5.8e-252 874.0 566 79.2
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 2.2e-251 872.1 523 83.9
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 2.2e-251 872.1 564 78.5
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 1.4e-250 869.4 556 78.1
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.2e-246 856.3 555 77.1
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 8.9e-245 850.1 553 75.9
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.2e-244 849.7 553 75.9
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 1.6e-241 839.3 542 76.0
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 2.3e-240 835.5 564 76.1
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 1.5e-231 806.2 487 82.5
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 9.3e-226 786.9 491 81.1
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 1.1e-218 763.5 540 70.9
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 3.5e-217 758.4 456 83.1
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 6.0e-209 731.1 544 68.6
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 3.1e-197 692.2 463 76.0
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.3e-195 686.8 520 70.2
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 3.2e-194 682.2 520 69.8
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.8e-192 676.4 562 66.2
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.8e-190 669.1 566 64.8
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 3.7e-190 668.7 545 67.0
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 2.2e-187 659.4 406 81.8
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 1.1e-186 657.1 552 64.1
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.0e-184 650.6 421 80.0
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 5.1e-184 648.3 528 67.2
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.1e-175 620.5 566 61.7
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.4e-175 618.6 502 63.7
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 4.1e-165 585.5 553 58.4
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.7e-163 580.1 391 77.5
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 1.0e-160 570.9 473 64.7
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 4.0e-144 515.8 331 77.9
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 2.1e-137 493.4 305 79.7
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 7.8e-132 474.9 465 57.0
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 4.6e-124 449.1 526 50.4
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 4.6e-124 449.1 519 52.0
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 9.3e-117 424.9 525 49.7
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.0e-115 421.4 262 79.4
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 5.6e-114 415.6 240 87.5
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.8e-113 412.5 238 87.4
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.4e-112 411.0 302 72.2
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.4e-110 402.1 422 54.0
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 6.9e-96 355.5 382 54.2
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.2e-94 350.5 214 78.5
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.9e-93 347.4 462 45.9
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 2.7e-84 317.0 293 62.8
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 6.7e-83 312.4 160 90.0
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.2e-81 307.4 159 96.9
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 8.2e-81 305.4 158 91.1
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-80 303.9 226 73.0
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 3.8e-78 296.6 318 55.7
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 1.0e-75 288.5 308 56.2
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.2e-73 280.8 233 63.9
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 2.5e-69 267.3 178 78.7
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 7.2e-69 265.8 320 51.2
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.3e-66 256.9 156 82.7
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.8e-62 243.4 156 76.3
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.4e-58 229.9 160 74.4
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-52 210.7 123 86.2
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 1.4e-48 198.4 149 69.1
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.4e-48 197.6 183 59.0
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 1.7e-46 191.4 105 86.7
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 7.5e-42 176.0 113 77.0
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 7.5e-42 176.0 118 71.2
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 2.2e-41 174.5 154 61.7
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 1.2e-39 168.7 229 44.5
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 3.7e-33 147.1 96 78.1
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 1.0e-27 129.0 75 85.3
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 1.4e-27 128.6 147 51.7
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 3.7e-25 120.6 73 83.6
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 5.0e-22 110.2 55 96.4
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 4.3e-21 107.1 86 66.3
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 4.0e-19 100.5 58 84.5
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 7.1e-16 89.7 63 69.8
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 2.7e-15 87.8 88 61.4
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.6e-15 87.0 53 79.2
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 3.0e-14 84.3 44 81.8
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 3.6e-12 77.4 49 71.4
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-11 75.9 40 90.0
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 2.3e-11 74.7 60 65.0
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 8.9e-11 72.8 39 89.7
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 2.0e-10 71.6 57 59.6
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 5.1e-06 57.0 53 56.6


User provided reference genes

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