Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 5.5e-84 314.3 163 100.0
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 5.5e-84 314.3 163 100.0
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 5.5e-84 314.3 163 100.0
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 7.4e-65 250.8 149 88.6
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 8.2e-48 194.1 133 77.4
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 1.2e-46 190.3 141 73.8
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 1.2e-46 190.3 141 73.8
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 1.2e-46 190.3 139 74.1
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 2.6e-46 189.1 141 73.0
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.0e-45 187.2 137 73.0
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.3e-45 186.8 139 73.4
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 5.0e-45 184.9 139 71.9
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 1.5e-44 183.3 139 71.2
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.5e-44 183.3 139 71.2
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 3.2e-44 182.2 144 72.9
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 9.4e-44 180.6 137 69.3
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.6e-43 179.9 142 69.7
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 1.6e-43 179.9 145 72.4
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 6.1e-43 177.9 144 67.4
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 8.0e-43 177.6 139 69.1
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 1.4e-42 176.8 163 64.4
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 6.8e-42 174.5 140 69.3
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 6.8e-42 174.5 140 69.3
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 5.7e-41 171.4 143 68.5
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.8e-40 169.1 140 67.9
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 4.8e-40 168.3 138 65.9
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.2e-38 163.7 141 64.5
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.2e-38 163.7 141 64.5
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 2.0e-38 162.9 146 64.4
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 3.5e-38 162.2 149 62.4
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 4.5e-38 161.8 142 64.1
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.6e-35 153.3 138 63.0
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 1.6e-27 126.7 139 53.2
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.0e-26 124.0 129 54.3
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 4.0e-26 122.1 137 51.1
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 4.0e-26 122.1 141 51.1
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 6.8e-26 121.3 158 46.2
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 6.8e-26 121.3 138 50.7
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 8.9e-26 120.9 130 52.3
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 8.9e-26 120.9 141 50.4
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 1.2e-25 120.6 129 53.5
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.5e-25 120.2 153 48.4
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.6e-25 119.4 139 50.4
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.6e-25 119.4 116 57.8
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 5.7e-25 118.2 158 45.6
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 5.7e-25 118.2 138 48.6
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 5.7e-25 118.2 137 51.1
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 5.7e-25 118.2 127 54.3
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 7.5e-25 117.9 123 54.5
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.3e-24 117.1 138 49.3
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 1.3e-24 117.1 123 53.7
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 2.2e-24 116.3 144 51.4
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 6.3e-24 114.8 120 50.8
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 8.3e-24 114.4 131 52.7
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 8.3e-24 114.4 138 50.0
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.4e-23 113.6 135 51.1
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 1.4e-23 113.6 136 52.2
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.4e-23 113.6 131 49.6
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.8e-23 113.2 139 53.2
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.8e-23 113.2 141 50.4
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.2e-23 112.5 139 50.4
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 4.1e-23 112.1 135 51.1
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.1e-23 112.1 138 47.1
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 4.1e-23 112.1 150 44.7
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 7.0e-23 111.3 139 49.6
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.2e-22 110.5 148 44.6
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.2e-22 110.5 141 48.2
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 1.2e-22 110.5 142 49.3
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.6e-22 110.2 117 50.4
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.6e-22 110.2 136 47.8
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.0e-22 109.8 141 46.8
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.7e-22 109.4 138 47.8
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 4.5e-22 108.6 142 46.5
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 5.9e-22 108.2 139 51.1
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 5.9e-22 108.2 140 47.9
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 7.8e-22 107.8 134 48.5
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.7e-21 106.7 83 62.7
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.7e-21 106.7 139 48.9
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 1.7e-21 106.7 135 46.7
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.7e-21 106.7 120 49.2
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.3e-21 106.3 135 46.7
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 3.9e-21 105.5 142 45.8
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 5.0e-21 105.1 118 50.0
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 5.0e-21 105.1 106 50.0
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 6.6e-21 104.8 144 47.2
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 8.6e-21 104.4 143 46.9
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.1e-20 104.0 141 48.9
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.1e-20 104.0 133 47.4
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.1e-20 104.0 140 46.4
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.5e-20 103.6 120 43.3
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.5e-20 103.6 140 47.1
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.5e-20 102.8 126 47.6
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 2.5e-20 102.8 82 63.4
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 2.5e-20 102.8 138 46.4
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 3.3e-20 102.4 139 45.3
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 4.3e-20 102.1 141 44.7
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 4.3e-20 102.1 102 56.9
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 4.3e-20 102.1 131 48.1
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 5.6e-20 101.7 133 48.1
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 2.8e-19 99.4 89 59.6
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 2.8e-19 99.4 154 42.9
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 4.7e-19 98.6 139 46.8
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 8.0e-19 97.8 146 41.8
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.4e-18 97.1 134 45.5
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 2.3e-18 96.3 145 44.8
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 3.1e-18 95.9 139 47.5
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 6.8e-18 94.7 82 58.5
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 6.8e-18 94.7 136 41.2
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.2e-17 94.0 75 62.7
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 2.0e-17 93.2 133 42.1
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 3.4e-17 92.4 121 45.5
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 3.4e-17 92.4 85 55.3
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 4.4e-17 92.0 100 46.0
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 5.8e-17 91.7 159 40.3
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 7.5e-17 91.3 63 76.2
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 7.5e-17 91.3 83 55.4
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 7.5e-17 91.3 133 44.4
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 7.5e-17 91.3 135 46.7
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 9.8e-17 90.9 136 46.3
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 2.2e-16 89.7 135 43.7
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 6.4e-16 88.2 133 39.8
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 4.1e-15 85.5 153 37.9
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 4.1e-15 85.5 133 39.1
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 4.1e-15 85.5 149 38.9
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 9.2e-15 84.3 80 53.8
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 1.6e-14 83.6 117 44.4
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 1.6e-14 83.6 133 42.9
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.6e-14 82.0 146 37.7
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 1.3e-13 80.5 82 51.2
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 1.3e-13 80.5 136 36.8
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 2.3e-13 79.7 120 43.3
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 2.3e-13 79.7 133 38.3
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 3.0e-13 79.3 140 37.1
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 3.0e-13 79.3 140 37.1
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 3.9e-13 79.0 131 38.9
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 5.0e-13 78.6 155 36.8
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 1.9e-12 76.6 136 41.2
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 4.3e-12 75.5 135 43.0
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 2.1e-11 73.2 109 41.3
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 6.2e-11 71.6 149 35.6
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 8.0e-11 71.2 121 38.0
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 3.4e-09 65.9 115 38.3
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 4.4e-09 65.5 142 33.8
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 6.4e-08 61.6 64 48.4
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 8.3e-08 61.2 43 67.4
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 5.4e-07 58.5 83 36.1
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.6e-06 57.0 133 35.3
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.6e-06 57.0 56 53.6
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.5e-06 55.8 86 39.5
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 7.8e-06 54.7 95 40.0


User provided reference genes

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