Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01189 Brassica carinata HOM05D005151 ORTHO05D006322 2.4e-60 235.3 120 100.0
A08p19540 Brassica napus HOM05D005151 ORTHO05D006322 1.1e-54 216.5 113 98.2
C03p89080 Brassica napus HOM05D005151 ORTHO05D006322 1.1e-54 216.5 113 98.2
BolC3t21221H Brassica oleracea HOM05D005151 ORTHO05D006322 1.1e-54 216.5 113 98.2
BcaC01g01191 Brassica carinata HOM05D005151 ORTHO05D006322 4.3e-54 214.5 113 96.5
BcaB03g12621 Brassica carinata HOM05D005151 ORTHO05D006322 5.7e-54 214.2 113 97.3
Thhalv10027356m.g Eutrema salsugineum HOM05D005151 ORTHO05D006322 9.7e-54 213.4 112 97.3
Sp7g27640 Schrenkiella parvula HOM05D005151 ORTHO05D006322 9.7e-54 213.4 112 97.3
C01p09370 Brassica napus HOM05D005151 ORTHO05D006322 2.8e-53 211.8 112 96.4
BraA01t00781Z Brassica rapa HOM05D005151 ORTHO05D006322 2.8e-53 211.8 112 96.4
CARHR237730 Cardamine hirsuta HOM05D005151 ORTHO05D006322 4.8e-53 211.1 112 95.5
AL7G22420 Arabidopsis lyrata HOM05D005151 ORTHO05D006322 8.2e-53 210.3 112 95.5
BolC1t00925H Brassica oleracea HOM05D005151 ORTHO05D006322 8.2e-53 210.3 112 95.5
Carub.0004s1480 Capsella rubella HOM05D005151 ORTHO05D006322 1.1e-52 209.9 112 95.5
AT4G29830 Arabidopsis thaliana HOM05D005151 ORTHO05D006322 1.4e-52 209.5 112 94.6
Aa31LG2G20710 Aethionema arabicum HOM05D005151 ORTHO05D006322 4.1e-52 208.0 112 93.8
THA.LOC104820014 Tarenaya hassleriana HOM05D005151 ORTHO05D006322 1.7e-50 202.6 112 91.1
Cpa.g.sc28.112 Carica papaya HOM05D005151 ORTHO05D006322 4.6e-48 194.5 112 85.7
Atru.chr12.2297 Acer truncatum HOM05D005151 ORTHO05D006322 1.1e-46 189.9 112 83.9
Thecc.09G082600 Theobroma cacao HOM05D005151 ORTHO05D006322 5.7e-46 187.6 112 82.1
COL.COLO4_18151 Corchorus olitorius HOM05D005151 ORTHO05D006322 1.3e-45 186.4 112 83.0
Gorai.010G085400 Gossypium raimondii HOM05D005151 ORTHO05D006322 1.7e-45 186.0 112 82.1
Manes.16G098700 Manihot esculenta HOM05D005151 ORTHO05D006322 1.7e-45 186.0 112 83.9
Gohir.A07G013500 Gossypium hirsutum HOM05D005151 ORTHO05D006322 2.2e-45 185.7 112 81.2
Gohir.D06G073100 Gossypium hirsutum HOM05D005151 ORTHO05D006322 2.2e-45 185.7 112 81.2
Gorai.001G014000 Gossypium raimondii HOM05D005151 ORTHO05D006322 2.2e-45 185.7 112 81.2
ClCG03G015320 Citrullus lanatus HOM05D005151 ORTHO05D006322 2.8e-45 185.3 112 81.2
TWI63G0393 Tripterygium wilfordii HOM05D005151 ORTHO05D006322 3.7e-45 184.9 112 81.2
CsaV3_1G040710 Cucumis sativus L. HOM05D005151 ORTHO05D006322 4.8e-45 184.5 112 81.2
Gohir.D07G013300 Gossypium hirsutum HOM05D005151 ORTHO05D006322 4.8e-45 184.5 112 80.4
Ciclev10010808m.g Citrus clementina HOM05D005151 ORTHO05D006322 6.3e-45 184.1 112 81.2
MELO3C015499.2 Cucumis melo HOM05D005151 ORTHO05D006322 8.2e-45 183.7 112 80.4
Duzib168G1011 Durio zibethinus HOM05D005151 ORTHO05D006322 8.2e-45 183.7 112 80.4
TAR624G0089 Trochodendron aralioides HOM05D005151 ORTHO05D006322 8.2e-45 183.7 113 80.5
Eucgr.C03405 Eucalyptus grandis HOM05D005151 ORTHO05D006322 1.4e-44 183.0 112 80.4
Duzib150G1015 Durio zibethinus HOM05D005151 ORTHO05D006322 1.8e-44 182.6 112 78.6
Gohir.A06G074300 Gossypium hirsutum HOM05D005151 ORTHO05D006322 1.8e-44 182.6 112 80.4
Sabra06G0115300 Salix brachista HOM05D005151 ORTHO05D006322 1.8e-44 182.6 112 79.5
GSVIVG01015149001 Vitis vinifera HOM05D005151 ORTHO05D006322 1.8e-44 182.6 112 83.0
CSS0008874 Camellia sinensis var. sinensis HOM05D005151 ORTHO05D006322 2.4e-44 182.2 112 80.4
MBI15_g27849_MAGBIO Magnolia biondii HOM05D005151 ORTHO05D006322 2.4e-44 182.2 112 80.4
Nn6g35560 Nelumbo nucifera HOM05D005151 ORTHO05D006322 2.4e-44 182.2 112 82.1
Nn8g38754 Nelumbo nucifera HOM05D005151 ORTHO05D006322 5.3e-44 181.0 112 81.2
QL02p061718 Quercus lobata HOM05D005151 ORTHO05D006322 5.3e-44 181.0 112 79.5
Haze_25954 Corylus avellana HOM05D005151 ORTHO05D006322 6.9e-44 180.6 112 80.4
Potri.006G145800 Populus trichocarpa HOM05D005151 ORTHO05D006322 9.1e-44 180.3 112 79.5
CDE05G0358 Ceratophyllum demersum HOM05D005151 ORTHO05D006322 1.2e-43 179.9 112 77.7
Rhsim03G0230900 Rhododendron simsii HOM05D005151 ORTHO05D006322 1.2e-43 179.9 112 79.5
vmacro06306 Vaccinium macrocarpon HOM05D005151 ORTHO05D006322 1.2e-43 179.9 112 80.4
Cfa003042 Carpinus fangiana HOM05D005151 ORTHO05D006322 1.5e-43 179.5 112 81.2
MBI16_g18211_MAGBIO Magnolia biondii HOM05D005151 ORTHO05D006322 1.5e-43 179.5 112 78.6
Sed0024958 Sechium edule HOM05D005151 ORTHO05D006322 1.5e-43 179.5 112 76.8
CiPaw.03G210900 Carya illinoinensis HOM05D005151 ORTHO05D006322 2.0e-43 179.1 112 80.4
Sed0005858 Sechium edule HOM05D005151 ORTHO05D006322 2.6e-43 178.7 112 76.8
AUR62038818 Chenopodium quinoa HOM05D005151 ORTHO05D006322 7.7e-43 177.2 113 78.8
Glyma.17G052100 Glycine max HOM05D005151 ORTHO05D006322 7.7e-43 177.2 112 78.6
Lalb_Chr07g0181001 Lupinus albus HOM05D005151 ORTHO05D006322 7.7e-43 177.2 112 77.7
Lj4g0018142 Lotus japonicus HOM05D005151 ORTHO05D006322 1.0e-42 176.8 112 78.6
CSS0027881 Camellia sinensis var. sinensis HOM05D005151 ORTHO05D006322 1.3e-42 176.4 112 77.7
PSO210G4100 Papaver somniferum HOM05D005151 ORTHO05D006322 1.3e-42 176.4 119 73.9
PSO210G7456 Papaver somniferum HOM05D005151 ORTHO05D006322 2.2e-42 175.6 112 77.7
PGR142G4460 Punica granatum HOM05D005151 ORTHO05D006322 2.2e-42 175.6 112 77.7
Phvul.003G133800 Phaseolus vulgaris HOM05D005151 ORTHO05D006322 2.9e-42 175.3 112 76.8
VMungo1215G2073 Vigna mungo HOM05D005151 ORTHO05D006322 2.9e-42 175.3 112 76.8
Actinidia29915 Actinidia chinensis HOM05D005151 ORTHO05D006322 3.8e-42 174.9 112 77.7
Aqoxy7G03996 Aquilegia oxysepala HOM05D005151 ORTHO05D006322 5.0e-42 174.5 112 78.6
Medtr4g125710 Medicago truncatula HOM05D005151 ORTHO05D006322 5.0e-42 174.5 112 77.7
TPR.G9439 Trifolium pratense HOM05D005151 ORTHO05D006322 6.5e-42 174.1 112 76.8
Glyma.13G107300 Glycine max HOM05D005151 ORTHO05D006322 8.5e-42 173.7 112 76.8
Ca_21304_v3 Cicer arietinum L. HOM05D005151 ORTHO05D006322 1.1e-41 173.3 112 75.9
CANSAT56G1855 Cannabis sativa HOM05D005151 ORTHO05D006322 1.4e-41 172.9 112 77.7
AUR62041890 Chenopodium quinoa HOM05D005151 ORTHO05D006322 1.4e-41 172.9 113 77.0
TAR149G0001 Trochodendron aralioides HOM05D005151 ORTHO05D006322 1.4e-41 172.9 105 81.9
arahy.Tifrunner.gnm1.ann1.20C8M4 Arachis hypogaea HOM05D005151 ORTHO05D006322 1.9e-41 172.6 112 75.9
arahy.Tifrunner.gnm1.ann1.7L7952 Arachis hypogaea HOM05D005151 ORTHO05D006322 1.9e-41 172.6 112 75.9
Psat4g016320 Pisum sativum HOM05D005151 ORTHO05D006322 1.9e-41 172.6 112 75.9
Ah.12g064130 Amaranthus hybridus HOM05D005151 ORTHO05D006322 2.5e-41 172.2 115 77.4
Actinidia38461 Actinidia chinensis HOM05D005151 ORTHO05D006322 3.2e-41 171.8 112 75.9
COL.COLO4_27437 Corchorus olitorius HOM05D005151 ORTHO05D006322 4.2e-41 171.4 113 77.0
Sc09g0008330 Simmondsia chinensis HOM05D005151 ORTHO05D006322 1.2e-40 169.9 112 70.5
EL10Ac2g02619 Beta vulgaris HOM05D005151 ORTHO05D006322 1.0e-39 166.8 114 76.3
MD15G1212600 Malus domestica HOM05D005151 ORTHO05D006322 3.9e-39 164.9 112 75.9
Lsat_1_v5_gn_7_34720 Lactuca sativa HOM05D005151 ORTHO05D006322 5.1e-39 164.5 112 72.3
Dinv36800 Davidia involucrata HOM05D005151 ORTHO05D006322 6.7e-39 164.1 113 75.2
ECA240G1097 Erigeron canadensis HOM05D005151 ORTHO05D006322 8.8e-39 163.7 112 71.4
Hma1.2p1_0672F.1_g200870 Hydrangea macrophylla HOM05D005151 ORTHO05D006322 1.1e-38 163.3 112 73.2
Prupe.6G180900 Prunus persica HOM05D005151 ORTHO05D006322 2.0e-38 162.5 112 75.0
Pp3c2_28090 Physcomitrium patens HOM05D005151 ORTHO05D006322 2.6e-38 162.2 112 68.8
Pp3c2_28110 Physcomitrium patens HOM05D005151 ORTHO05D006322 2.6e-38 162.2 112 68.8
MD02G1085500 Malus domestica HOM05D005151 ORTHO05D006322 5.7e-38 161.0 112 72.3
Mapoly0001s0052 Marchantia polymorpha HOM05D005151 ORTHO05D006322 5.7e-38 161.0 112 68.8
HanXRQChr03g0063021 Helianthus annuus HOM05D005151 ORTHO05D006322 1.3e-37 159.8 112 70.5
FvH4_1g30420 Fragaria vesca HOM05D005151 ORTHO05D006322 2.8e-37 158.7 112 71.4
FAN23G2025 Fragaria x ananassa HOM05D005151 ORTHO05D006322 2.8e-37 158.7 112 71.4
FAN26G3474 Fragaria x ananassa HOM05D005151 ORTHO05D006322 2.8e-37 158.7 112 71.4
FAN28G0640 Fragaria x ananassa HOM05D005151 ORTHO05D006322 2.8e-37 158.7 112 71.4
FAN28G1692 Fragaria x ananassa HOM05D005151 ORTHO05D006322 2.8e-37 158.7 112 71.4
SEGI_01394 Sequoiadendron giganteum HOM05D005151 ORTHO05D006322 2.8e-37 158.7 114 67.5
Cfa018999 Carpinus fangiana HOM05D005151 ORTHO05D006322 3.7e-37 158.3 105 79.0
RcHm_v2.0_Chr3g0490661 Rosa chinensis HOM05D005151 ORTHO05D006322 4.8e-37 157.9 112 71.4
AagrBONN_evm.TU.Sc2ySwM_344.2105 Anthoceros agrestis HOM05D005151 ORTHO05D006322 1.1e-36 156.8 112 67.0
Oeu051308.2 Olea europaea HOM05D005151 ORTHO05D006322 1.1e-36 156.8 118 66.9
AagrBONN_evm.TU.Sc2ySwM_344.5188 Anthoceros agrestis HOM05D005151 ORTHO05D006322 1.4e-36 156.4 112 65.2
FAN19G1484 Fragaria x ananassa HOM05D005151 ORTHO05D006322 1.8e-36 156.0 112 70.5
Lj4A288G22 Lonicera japonica HOM05D005151 ORTHO05D006322 3.1e-36 155.2 110 70.9
unitig_699.g19288 Utricularia gibba HOM05D005151 ORTHO05D006322 5.3e-36 154.5 112 67.9
Migut.L01534 Erythranthe guttata HOM05D005151 ORTHO05D006322 2.0e-35 152.5 112 68.8
Oeu051307.1 Olea europaea HOM05D005151 ORTHO05D006322 2.0e-35 152.5 116 65.5
Oeu054828.1 Olea europaea HOM05D005151 ORTHO05D006322 2.0e-35 152.5 112 67.0
SGA_v2.0_scaffold23G10051 Striga asiatica HOM05D005151 ORTHO05D006322 4.5e-35 151.4 112 69.6
MSTRG.10530 Avicennia marina HOM05D005151 ORTHO05D006322 5.9e-35 151.0 112 67.9
DCAR_024719 Daucus carota HOM05D005151 ORTHO05D006322 1.0e-34 150.2 112 66.1
SalBow1G7018 Salvia bowleyana HOM05D005151 ORTHO05D006322 1.7e-34 149.4 112 66.1
Nitab4.5_0002642g0040 Nicotiana tabacum HOM05D005151 ORTHO05D006322 1.1e-33 146.7 112 62.5
Solyc07g041080.3 Solanum lycopersicum HOM05D005151 ORTHO05D006322 1.1e-33 146.7 112 65.2
Nitab4.5_0002079g0070 Nicotiana tabacum HOM05D005151 ORTHO05D006322 1.4e-33 146.4 112 63.4
PGSC0003DMG400016078 Solanum tuberosum HOM05D005151 ORTHO05D006322 1.9e-33 146.0 112 65.2
Nitab4.5_0002842g0020 Nicotiana tabacum HOM05D005151 ORTHO05D006322 3.2e-33 145.2 112 62.5
Sopen07g020370 Solanum pennellii HOM05D005151 ORTHO05D006322 3.2e-33 145.2 112 64.3
SMO244G0035 Selaginella moellendorffii HOM05D005151 ORTHO05D006322 1.6e-32 142.9 112 61.6
Sopen12g003960 Solanum pennellii HOM05D005151 ORTHO05D006322 1.6e-32 142.9 112 62.5
PGSC0003DMG400000330 Solanum tuberosum HOM05D005151 ORTHO05D006322 1.6e-32 142.9 112 62.5
Nitab4.5_0000073g0020 Nicotiana tabacum HOM05D005151 ORTHO05D006322 2.1e-32 142.5 112 59.8
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 2.1e-32 142.5 112 62.5
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 2.7e-32 142.1 115 60.9
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 3.6e-32 141.7 114 60.5
Peaxi162Scf00498g00525 Petunia axillaris HOM05D005151 ORTHO05D006322 4.7e-32 141.4 113 62.8
Cc06_g11820 Coffea canephora HOM05D005151 ORTHO05D006322 3.0e-31 138.7 112 62.5
SHI30700 Sapria himalayana HOM05D005151 ORTHO05D006322 3.1e-28 128.6 112 51.8
CBR_g54314 Chara braunii HOM05D005151 ORTHO05D006322 2.5e-25 119.0 115 51.3
HPP92_018271 Vanilla planifolia HOM05D000049 ORTHO05D000027 2.1e-24 115.9 112 54.5
Cfa018237 Carpinus fangiana HOM05D005151 ORTHO05D006322 1.8e-23 112.8 77 72.7
MCO13G438 Micromonas commoda HOM05D005151 ORTHO05D006322 7.0e-20 100.9 114 50.0
TAR587G0001 Trochodendron aralioides HOM05D005151 ORTHO05D006322 7.7e-19 97.4 62 82.3
Haze_27115 Corylus avellana HOM05D005151 ORTHO05D006322 2.8e-08 62.4 98 38.8
Cre11.g468377 Chlamydomonas reinhardtii HOM05D005151 ORTHO05D006322 1.8e-07 59.7 108 38.9


User provided reference genes

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