Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00400 Brassica carinata HOM05D012303 ORTHO05D014119 6.0e-67 257.3 124 100.0
BcaC02g08510 Brassica carinata HOM05D012303 ORTHO05D014119 3.8e-61 238.0 124 91.1
C03p79310 Brassica napus HOM05D012303 ORTHO05D014119 4.1e-55 218.0 124 87.1
BolC3t20174H Brassica oleracea HOM05D012303 ORTHO05D014119 6.9e-55 217.2 124 87.1
BcaC05g27014 Brassica carinata HOM05D012303 ORTHO05D014119 5.0e-53 211.1 105 95.2
C05p28810 Brassica napus HOM05D012303 ORTHO05D014119 6.5e-53 210.7 124 83.1
BolC8t50674H Brassica oleracea HOM05D012303 ORTHO05D014119 3.2e-52 208.4 124 83.9
BolC4t26913H Brassica oleracea HOM05D012303 ORTHO05D014119 7.9e-51 203.8 124 80.6
C04p53580 Brassica napus HOM05D012303 ORTHO05D014119 2.3e-50 202.2 124 80.6
A09p37760 Brassica napus HOM05D012303 ORTHO05D014119 3.9e-50 201.4 125 80.8
A09p37750 Brassica napus HOM05D012303 ORTHO05D014119 1.3e-48 196.4 124 79.0
BolC5t31598H Brassica oleracea HOM05D012303 ORTHO05D014119 8.5e-45 183.7 88 96.6
C09p30450 Brassica napus HOM05D012303 ORTHO05D014119 2.0e-38 162.5 88 89.8
BraA09t40423Z Brassica rapa HOM05D012303 ORTHO05D014119 1.7e-37 159.5 102 80.4
BolC9t59952H Brassica oleracea HOM05D003015 ORTHO05D003733 4.8e-32 141.4 113 64.6
BraA10t45186Z Brassica rapa HOM05D003015 ORTHO05D003733 4.7e-19 98.2 65 73.8
C09p72070 Brassica napus HOM05D003015 ORTHO05D003733 1.8e-18 96.3 67 68.7
A10p31400 Brassica napus HOM05D003015 ORTHO05D003733 2.6e-17 92.4 65 70.8
BcaC06g32186 Brassica carinata HOM05D003015 ORTHO05D003733 1.3e-16 90.1 102 54.9
AL1G17510 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 8.3e-16 87.4 104 52.9
CARHR204790 Cardamine hirsuta HOM05D003015 ORTHO05D003733 7.0e-15 84.3 112 49.1
AT2G29580 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 1.0e-13 80.5 134 44.8
Sp4g12310 Schrenkiella parvula HOM05D003015 ORTHO05D003733 3.8e-13 78.6 134 42.5
AL4G24300 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 4.7e-11 71.6 132 43.2
BcaC08g43441 Brassica carinata HOM05D010688 ORTHO05D010630 4.4e-09 65.1 36 86.1
BolC6t35892H Brassica oleracea HOM05D010688 ORTHO05D010630 4.4e-09 65.1 36 86.1
BolC4t27389H Brassica oleracea HOM05D003015 ORTHO05D003733 7.5e-09 64.3 123 36.6
Thhalv10016591m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 7.5e-09 64.3 134 38.8
THA.LOC104826299 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 1.7e-08 63.2 130 39.2
CARHR007070 Cardamine hirsuta HOM05D003015 ORTHO05D003733 2.8e-08 62.4 103 43.7
AL6G17220 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 8.3e-08 60.8 124 39.5
AT1G07360 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 2.4e-07 59.3 104 44.2
BcaC02g08076 Brassica carinata HOM05D003015 ORTHO05D003733 3.1e-07 58.9 116 35.3
C04p58700 Brassica napus HOM05D003015 ORTHO05D003733 3.1e-07 58.9 116 35.3
BcaB02g10264 Brassica carinata HOM05D003015 ORTHO05D039340 4.1e-07 58.5 130 34.6
THA.LOC104800716 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 4.1e-07 58.5 115 38.3
BcaB04g19563 Brassica carinata HOM05D010688 ORTHO05D010630 5.4e-07 58.2 36 77.8
BcaC04g23787 Brassica carinata HOM05D010688 ORTHO05D010630 5.4e-07 58.2 36 77.8
Carub.0001s0666 Capsella rubella HOM05D003015 ORTHO05D003733 7.0e-07 57.8 105 42.9
Phvul.L002537 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 7.0e-07 57.8 125 39.2
VMungo0540G1143 Vigna mungo HOM05D003015 ORTHO05D003733 9.2e-07 57.4 114 39.5
Prupe.2G214800 Prunus persica HOM05D003015 ORTHO05D003733 1.6e-06 56.6 114 36.0
Prupe.8G143100 Prunus persica HOM05D003015 ORTHO05D003733 1.6e-06 56.6 114 36.0
AUR62037628 Chenopodium quinoa HOM05D003015 ORTHO05D003733 2.0e-06 56.2 122 36.1
RcHm_v2.0_Chr4g0408701 Rosa chinensis HOM05D003015 ORTHO05D003733 2.0e-06 56.2 117 35.0
Lalb_Chr02g0153531 Lupinus albus HOM05D003015 ORTHO05D003733 3.5e-06 55.5 125 39.2
Ah.04g164350 Amaranthus hybridus HOM05D003015 ORTHO05D003733 5.9e-06 54.7 121 36.4
Cfa011635 Carpinus fangiana HOM05D003015 ORTHO05D003733 5.9e-06 54.7 105 40.0
Haze_24240 Corylus avellana HOM05D003015 ORTHO05D003733 5.9e-06 54.7 105 40.0
Gohir.D03G029400 Gossypium hirsutum HOM05D003015 ORTHO05D003733 5.9e-06 54.7 126 35.7
Gorai.003G031000 Gossypium raimondii HOM05D003015 ORTHO05D003733 5.9e-06 54.7 126 35.7
EL10Ac4g08321 Beta vulgaris HOM05D003015 ORTHO05D003733 7.7e-06 54.3 123 35.0


User provided reference genes

Program Settings