Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 6.8e-207 723.8 370 100.0
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.9e-196 689.1 383 93.5
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.9e-196 689.1 383 93.5
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 2.4e-196 688.7 383 93.7
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 9.2e-196 686.8 383 93.5
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 2.7e-187 658.7 383 89.6
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 3.0e-186 655.2 383 88.3
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.6e-184 649.4 383 88.0
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.1e-184 649.0 384 88.5
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 6.2e-184 647.5 384 88.3
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 8.1e-184 647.1 383 88.0
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 2.3e-183 645.6 383 87.2
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 4.0e-183 644.8 383 85.9
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 1.5e-182 642.9 384 87.5
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 8.3e-181 637.1 384 87.2
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 1.4e-180 636.3 383 86.4
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 7.1e-180 634.0 380 87.6
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 2.5e-177 625.5 384 86.2
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 2.5e-177 625.5 384 86.2
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 4.3e-177 624.8 385 86.8
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 4.3e-177 624.8 385 86.8
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.1e-167 593.6 384 82.8
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 1.9e-164 582.8 377 79.8
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 5.6e-153 544.7 375 76.0
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 3.0e-146 522.3 383 73.4
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 7.4e-145 517.7 383 72.6
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.3e-144 516.9 386 73.3
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 4.0e-143 511.9 395 71.1
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 5.3e-143 511.5 377 72.7
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 5.3e-143 511.5 380 72.6
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 2.0e-142 509.6 383 72.1
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 2.6e-142 509.2 380 72.1
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.4e-142 508.8 377 72.4
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 4.5e-142 508.4 385 71.9
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 4.5e-142 508.4 357 76.5
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 1.0e-141 507.3 380 70.5
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 1.7e-141 506.5 385 71.2
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 2.9e-141 505.8 386 70.2
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.9e-141 505.8 378 72.0
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.0e-141 505.0 357 74.2
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.1e-140 503.8 361 73.7
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.4e-140 503.4 366 72.1
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 4.2e-140 501.9 354 74.0
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 7.1e-140 501.1 354 74.6
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 9.3e-140 500.7 378 71.7
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 9.3e-140 500.7 360 73.9
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 2.1e-139 499.6 365 71.0
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 3.5e-139 498.8 356 75.3
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 8.7e-138 494.2 380 70.5
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.1e-137 493.8 387 69.5
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.5e-137 493.4 369 72.1
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.9e-137 493.0 355 73.2
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 2.5e-137 492.7 344 74.7
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 4.3e-137 491.9 380 68.7
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 4.3e-137 491.9 355 73.5
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 7.4e-137 491.1 378 69.6
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 9.7e-137 490.7 380 69.5
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.3e-136 490.3 358 72.6
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.3e-136 490.3 355 73.8
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 2.2e-136 489.6 348 75.3
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 2.2e-136 489.6 354 72.9
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 2.8e-136 489.2 382 69.9
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 2.8e-136 489.2 324 77.8
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 3.7e-136 488.8 353 73.1
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 4.8e-136 488.4 338 75.7
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 6.3e-136 488.0 365 70.4
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 6.3e-136 488.0 346 73.4
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 8.2e-136 487.6 375 68.8
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.1e-135 487.3 359 70.8
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.1e-135 487.3 386 68.7
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.1e-135 487.3 363 71.3
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 1.1e-135 487.3 325 76.9
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.1e-135 487.3 368 71.5
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 1.4e-135 486.9 368 71.7
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.8e-135 486.5 348 75.9
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.8e-135 486.5 361 71.7
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 3.1e-135 485.7 371 71.7
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 4.1e-135 485.3 351 72.9
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 5.3e-135 485.0 361 71.5
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 9.0e-135 484.2 339 74.3
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 9.0e-135 484.2 400 67.2
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 1.2e-134 483.8 361 71.2
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.2e-134 483.8 379 69.9
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 1.5e-134 483.4 358 71.5
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.0e-134 483.0 352 72.4
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.0e-134 483.0 352 72.4
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 3.4e-134 482.3 344 72.7
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.9e-134 481.5 363 71.1
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.0e-133 480.7 355 73.0
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.7e-133 479.9 380 67.9
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.7e-133 479.9 362 72.4
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.2e-133 479.6 352 72.7
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.2e-133 479.6 373 69.7
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 3.8e-133 478.8 356 71.1
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 3.8e-133 478.8 343 74.3
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 1.4e-132 476.9 353 71.4
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.4e-132 476.9 350 71.1
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 1.9e-132 476.5 368 69.0
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.9e-132 476.5 368 69.0
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.9e-132 476.5 373 69.4
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 4.2e-132 475.3 369 68.3
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 9.4e-132 474.2 366 68.6
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.6e-131 472.2 356 70.2
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 4.6e-131 471.9 376 68.9
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 6.1e-131 471.5 343 73.5
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 7.9e-131 471.1 361 69.8
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 1.4e-130 470.3 350 72.3
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-130 470.3 360 69.4
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 1.4e-130 470.3 365 69.3
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 2.3e-130 469.5 456 59.6
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 5.1e-130 468.4 348 71.0
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 2.0e-129 466.5 332 72.6
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.3e-129 465.7 365 68.5
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.3e-129 465.7 365 68.5
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 4.3e-129 465.3 349 71.3
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 3.7e-128 462.2 351 70.7
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 4.8e-128 461.8 363 70.2
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 4.8e-128 461.8 317 76.3
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.8e-127 459.9 359 68.5
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.4e-127 459.5 359 68.5
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 3.1e-127 459.1 371 67.9
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 5.3e-127 458.4 363 68.0
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 9.1e-127 457.6 364 67.9
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.2e-126 457.2 391 64.2
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.2e-126 457.2 432 60.4
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.5e-126 456.8 363 68.0
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.0e-126 456.4 369 66.9
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.5e-126 455.3 369 66.4
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 7.7e-126 454.5 321 74.5
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 3.8e-125 452.2 345 69.6
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 8.5e-125 451.1 347 72.0
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.6e-123 445.7 286 80.1
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 2.3e-122 443.0 437 58.6
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.5e-121 440.3 321 71.7
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 2.6e-121 439.5 363 65.8
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 4.4e-121 438.7 286 77.6
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 8.2e-120 434.5 356 65.7
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.7e-118 427.9 348 65.8
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.7e-117 426.8 323 69.3
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 2.9e-117 426.0 299 72.9
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.5e-116 423.7 303 72.6
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.5e-116 423.7 343 65.6
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 4.2e-116 422.2 321 69.5
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 7.2e-116 421.4 320 70.6
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.4e-114 417.2 299 71.6
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 5.2e-114 415.2 334 65.6
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.6e-107 393.7 310 69.4
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 3.5e-102 375.9 237 81.4
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.5e-100 370.5 313 63.3
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.2e-96 356.7 322 59.6
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 9.8e-89 331.3 260 70.8
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 3.2e-87 326.2 268 69.0
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.4e-82 310.8 289 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 5.4e-79 298.9 228 71.9
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 7.8e-70 268.5 228 69.3
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 1.2e-67 261.2 203 69.0
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 3.4e-65 253.1 190 72.1
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 2.2e-64 250.4 309 48.9
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 3.2e-63 246.5 228 64.9
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 3.2e-63 246.5 228 64.9
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 5.1e-61 239.2 310 50.3
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 2.2e-48 197.2 192 56.2
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 1.5e-41 174.5 104 84.6
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 4.5e-41 172.9 159 62.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 7.6e-41 172.2 102 86.3
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 7.6e-41 172.2 102 86.3
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 4.9e-40 169.5 102 85.3
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 4.2e-39 166.4 106 81.1
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 2.1e-38 164.1 98 84.7
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.3e-37 161.4 107 76.6
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.5e-36 157.9 88 80.7
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.9e-36 157.5 106 76.4
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.2e-22 111.7 64 85.9
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 2.1e-22 110.9 177 40.1
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 7.7e-17 92.4 67 74.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.2e-16 90.9 49 89.8
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 1.5e-12 78.2 38 94.7
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 1.7e-11 74.7 38 92.1


User provided reference genes

Program Settings