Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 0.0e+00 1589.3 911 100.0
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1416.7 917 86.9
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 0.0e+00 1416.7 917 86.9
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1411.4 916 87.9
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 0.0e+00 1403.3 918 87.6
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 0.0e+00 1273.1 915 80.1
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1264.2 915 78.5
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 0.0e+00 1258.4 925 80.8
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1243.4 914 78.7
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 0.0e+00 1226.1 914 77.8
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 0.0e+00 1221.8 920 77.2
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 0.0e+00 1199.1 922 76.4
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 0.0e+00 1196.8 867 75.9
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 0.0e+00 1183.7 934 73.1
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 0.0e+00 1177.5 930 74.7
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 0.0e+00 1171.8 930 73.7
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 0.0e+00 1170.6 930 74.8
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 0.0e+00 1077.4 929 67.4
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 3.0e-240 835.9 960 52.3
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 2.9e-235 819.3 957 51.4
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 5.0e-235 818.5 968 50.6
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 1.1e-234 817.4 970 50.6
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 4.2e-234 815.5 944 52.4
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 3.0e-232 809.3 950 53.1
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 6.7e-232 808.1 947 52.7
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.1e-231 807.4 986 50.7
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 1.3e-230 803.9 947 52.4
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 6.3e-230 801.6 891 52.4
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 1.1e-229 800.8 840 54.5
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 4.5e-228 795.4 958 51.3
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 1.0e-227 794.3 948 51.8
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 8.0e-225 784.6 824 55.7
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 1.4e-224 783.9 839 53.3
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 1.4e-224 783.9 904 51.8
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 1.6e-220 770.4 960 50.3
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 2.7e-220 769.6 838 54.4
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 5.9e-220 768.5 837 52.8
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 2.9e-219 766.1 948 50.8
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 1.1e-218 764.2 901 51.2
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.9e-218 763.5 957 49.9
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 3.2e-218 762.7 969 49.9
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 6.8e-216 755.0 868 52.1
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 8.8e-216 754.6 886 51.1
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 2.6e-215 753.1 876 50.6
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 3.4e-215 752.7 837 52.9
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 4.8e-214 748.8 943 49.2
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 1.4e-213 747.3 964 50.0
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 1.8e-213 746.9 830 52.7
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 9.1e-213 744.6 963 48.9
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.2e-212 744.2 977 48.7
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.2e-212 744.2 953 49.1
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.6e-212 743.8 961 49.0
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 4.5e-212 742.3 961 48.3
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 1.0e-211 741.1 904 49.9
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.3e-211 740.0 833 50.9
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 3.8e-211 739.2 850 53.1
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 6.6e-211 738.4 830 51.7
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 1.2e-207 727.6 958 48.3
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 5.7e-207 725.3 931 49.2
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 6.3e-206 721.8 952 47.8
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 1.2e-204 717.6 838 51.6
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 5.9e-204 715.3 837 49.8
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 1.0e-203 714.5 934 48.6
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.7e-203 713.8 837 50.2
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 2.9e-203 713.0 971 47.1
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 8.6e-203 711.4 946 49.2
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 8.6e-203 711.4 954 49.2
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 1.5e-202 710.7 906 48.1
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.0e-200 704.5 937 46.2
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 3.0e-200 703.0 945 46.5
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 5.2e-200 702.2 953 46.7
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 6.8e-200 701.8 834 50.2
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 1.7e-198 697.2 968 45.7
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 3.7e-198 696.0 951 46.3
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 6.4e-198 695.3 949 47.2
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.2e-196 691.0 945 47.8
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 2.3e-195 686.8 906 48.3
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 3.9e-195 686.0 879 48.4
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 5.0e-195 685.6 946 46.0
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 6.6e-195 685.3 892 49.6
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 4.3e-194 682.6 948 46.1
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 7.3e-194 681.8 906 46.6
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.6e-193 679.5 1000 44.9
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 2.3e-192 676.8 760 51.3
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 2.3e-192 676.8 904 46.6
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 3.1e-192 676.4 913 47.5
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 5.2e-192 675.6 964 45.9
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 6.8e-192 675.2 840 48.3
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 2.0e-191 673.7 904 46.1
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 4.4e-191 672.5 830 49.0
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.9e-189 667.2 974 44.3
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 2.1e-188 663.7 949 46.2
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 1.9e-186 657.1 775 49.0
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 2.6e-183 646.7 965 45.3
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 5.8e-183 645.6 772 49.5
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 2.9e-182 643.3 941 44.3
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 4.9e-182 642.5 991 43.2
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 5.4e-181 639.0 932 43.7
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 1.7e-179 634.0 987 44.3
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 2.0e-175 620.5 943 43.4
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.0e-171 608.2 793 44.5
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 2.3e-171 607.1 831 44.9
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 1.8e-168 597.4 582 54.5
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 2.3e-163 580.5 998 40.7
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 1.9e-157 560.8 982 40.6
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.1e-154 551.6 632 50.3
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.2e-150 537.3 932 40.5
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 5.1e-147 526.2 484 57.4
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.3e-142 511.5 932 39.7
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.5e-140 503.4 480 56.2
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 8.7e-139 498.8 872 40.9
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 2.4e-136 490.7 477 54.9
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 5.9e-135 486.1 820 40.2
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 7.2e-133 479.2 991 36.2
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.9e-109 401.4 548 45.3
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 1.2e-108 398.7 303 69.6
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.9e-102 377.5 263 76.4
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 8.0e-100 369.4 571 41.0
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.8e-83 315.1 492 40.9
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 1.2e-71 275.8 391 43.2
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 3.3e-69 267.7 398 43.0
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 2.4e-64 251.5 295 48.1
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 4.3e-61 240.7 342 45.9
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 2.4e-59 235.0 583 30.5
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 4.0e-59 234.2 331 45.0
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 1.7e-57 228.8 487 39.8
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 2.9e-57 228.0 488 32.2
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.3e-54 219.2 327 45.9
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.9e-53 215.3 171 63.2
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 7.6e-50 203.4 424 41.3
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 4.9e-49 200.7 446 39.2
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 6.4e-49 200.3 168 58.9
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 7.4e-37 160.2 431 39.2
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 7.9e-31 140.2 88 83.0
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 3.0e-30 138.3 95 67.4
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 4.6e-23 114.4 82 68.3
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 4.8e-20 104.4 151 43.7
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.4e-19 102.8 151 43.7
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.7e-15 88.6 211 30.8
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 6.1e-15 87.4 84 48.8
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.4e-14 86.3 129 43.4
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 8.8e-14 83.6 65 63.1
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.7e-12 79.3 85 52.9
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.4e-08 66.2 90 45.6
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.2e-07 63.2 90 46.7
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 3.6e-07 61.6 49 49.0
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 6.7e-06 57.4 40 57.5


User provided reference genes

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