Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37222 Brassica carinata HOM05D004285 ORTHO05D005176 1.1e-95 353.6 218 100.0
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 5.4e-87 324.7 211 95.7
Thhalv10014638m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 1.6e-86 323.2 218 91.3
BraA10t44845Z Brassica rapa HOM05D004285 ORTHO05D005176 6.0e-86 321.2 238 87.8
Sp6g34050 Schrenkiella parvula HOM05D004285 ORTHO05D005176 6.0e-86 321.2 218 92.7
Carub.0006s0781 Capsella rubella HOM05D004285 ORTHO05D005176 1.7e-85 319.7 218 87.6
AL6G19650 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 2.5e-84 315.8 218 82.1
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 7.3e-84 314.3 211 90.0
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 6.8e-82 307.8 237 81.4
Aa31LG3G17740 Aethionema arabicum HOM05D004285 ORTHO05D005176 3.4e-81 305.4 218 84.4
AT5G09260 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 4.9e-80 301.6 218 83.5
THA.LOC104819347 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 6.4e-80 301.2 222 82.0
BcaC01g02639 Brassica carinata HOM05D004285 ORTHO05D005176 4.1e-79 298.5 222 79.7
BcaB02g09769 Brassica carinata HOM05D004285 ORTHO05D005176 3.5e-78 295.4 222 77.9
BolC3t18513H Brassica oleracea HOM05D004285 ORTHO05D005176 3.5e-78 295.4 222 79.7
THA.LOC104818421 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 1.3e-77 293.5 218 81.2
AT5G63880 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 1.5e-76 290.0 222 76.1
CARHR277780 Cardamine hirsuta HOM05D004285 ORTHO05D005176 2.5e-76 289.3 222 75.2
AL8G41110 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 1.2e-75 287.0 222 78.8
Aa31LG1G18000 Aethionema arabicum HOM05D004285 ORTHO05D005176 2.1e-75 286.2 223 77.1
C03p62560 Brassica napus HOM05D004285 ORTHO05D005176 6.2e-75 284.6 215 79.5
Carub.0008s2465 Capsella rubella HOM05D004285 ORTHO05D005176 6.2e-75 284.6 222 74.8
BcaNung04632 Brassica carinata HOM05D004285 ORTHO05D005176 8.1e-75 284.3 218 76.1
BcaNung04637 Brassica carinata HOM05D004285 ORTHO05D005176 8.1e-75 284.3 218 76.1
Sp2g26940 Schrenkiella parvula HOM05D004285 ORTHO05D005176 2.4e-74 282.7 220 75.0
BraA06t25999Z Brassica rapa HOM05D004285 ORTHO05D005176 8.9e-74 280.8 244 71.3
A06p30500 Brassica napus HOM05D004285 ORTHO05D005176 1.2e-73 280.4 213 77.5
Cc03_g16000 Coffea canephora HOM05D004285 ORTHO05D005176 4.4e-73 278.5 220 75.5
TWI79G0936 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 7.6e-73 277.7 227 69.6
Gorai.012G036800 Gossypium raimondii HOM05D004285 ORTHO05D005176 4.9e-72 275.0 222 73.4
Thhalv10004899m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 6.4e-72 274.6 219 74.0
Cpa.g.sc37.8 Carica papaya HOM05D004285 ORTHO05D005176 8.4e-72 274.2 207 75.4
CiPaw.03G117900 Carya illinoinensis HOM05D004285 ORTHO05D005176 1.4e-71 273.5 223 73.1
Potri.005G067700 Populus trichocarpa HOM05D004285 ORTHO05D005176 1.4e-71 273.5 223 72.2
Atru.chr4.994 Acer truncatum HOM05D004285 ORTHO05D005176 3.2e-71 272.3 221 72.9
Gohir.D04G032400 Gossypium hirsutum HOM05D004285 ORTHO05D005176 4.2e-71 271.9 222 70.7
Thecc.01G137100 Theobroma cacao HOM05D004285 ORTHO05D005176 7.1e-71 271.2 227 69.6
TPR.G33552 Trifolium pratense HOM05D004285 ORTHO05D005176 7.1e-71 271.2 218 73.9
AUR62012692 Chenopodium quinoa HOM05D004285 ORTHO05D005176 9.3e-71 270.8 222 73.9
AUR62021963 Chenopodium quinoa HOM05D004285 ORTHO05D005176 9.3e-71 270.8 222 73.9
Cfa002202 Carpinus fangiana HOM05D004285 ORTHO05D005176 1.2e-70 270.4 231 68.8
SGA_v2.0_scaffold12G06217 Striga asiatica HOM05D004285 ORTHO05D005176 1.2e-70 270.4 221 68.8
EL10Ac8g20044 Beta vulgaris HOM05D004285 ORTHO05D005176 1.6e-70 270.0 227 67.8
Gohir.A05G382800 Gossypium hirsutum HOM05D004285 ORTHO05D005176 1.6e-70 270.0 222 70.3
GSVIVG01029745001 Vitis vinifera HOM05D004285 ORTHO05D005176 1.6e-70 270.0 227 67.8
Oeu050306.1 Olea europaea HOM05D004285 ORTHO05D005176 2.7e-70 269.2 219 73.1
CsaV3_4G030940 Cucumis sativus L. HOM05D004285 ORTHO05D005176 3.5e-70 268.9 224 67.0
Lj1g0004585 Lotus japonicus HOM05D004285 ORTHO05D005176 3.5e-70 268.9 218 70.2
PGR102G2430 Punica granatum HOM05D004285 ORTHO05D005176 3.5e-70 268.9 220 71.4
MELO3C008970.2 Cucumis melo HOM05D004285 ORTHO05D005176 7.8e-70 267.7 224 67.0
Lalb_Chr08g0238191 Lupinus albus HOM05D004285 ORTHO05D005176 7.8e-70 267.7 218 71.6
Peaxi162Scf00169g00092 Petunia axillaris HOM05D004285 ORTHO05D005176 1.0e-69 267.3 227 70.5
QL10p041258 Quercus lobata HOM05D004285 ORTHO05D005176 1.0e-69 267.3 225 68.4
QL10p041526 Quercus lobata HOM05D004285 ORTHO05D005176 1.0e-69 267.3 225 68.4
RcHm_v2.0_Chr4g0406031 Rosa chinensis HOM05D004285 ORTHO05D005176 1.0e-69 267.3 222 68.9
Prupe.4G274300 Prunus persica HOM05D004285 ORTHO05D005176 1.3e-69 266.9 222 69.8
Lalb_Chr11g0068611 Lupinus albus HOM05D004285 ORTHO05D005176 1.7e-69 266.5 218 71.6
PSO675G1889 Papaver somniferum HOM05D004285 ORTHO05D005176 1.7e-69 266.5 228 66.2
Sed0015518 Sechium edule HOM05D004285 ORTHO05D005176 1.7e-69 266.5 224 67.9
Phvul.009G154500 Phaseolus vulgaris HOM05D004285 ORTHO05D005176 2.3e-69 266.2 218 69.3
Nitab4.5_0000668g0170 Nicotiana tabacum HOM05D004285 ORTHO05D005176 3.0e-69 265.8 228 69.3
MSTRG.22052 Avicennia marina HOM05D004285 ORTHO05D005176 3.9e-69 265.4 224 67.9
TWI75G0304 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 3.9e-69 265.4 227 68.3
arahy.Tifrunner.gnm1.ann1.054DCV Arachis hypogaea HOM05D004285 ORTHO05D005176 6.6e-69 264.6 218 72.5
Ca_16982_v3 Cicer arietinum L. HOM05D004285 ORTHO05D005176 6.6e-69 264.6 218 67.9
Manes.06G003800 Manihot esculenta HOM05D004285 ORTHO05D005176 8.7e-69 264.2 225 69.3
Hund21406 Selenicereus undatus HOM05D004285 ORTHO05D005176 8.7e-69 264.2 218 68.8
TAR376G0205 Trochodendron aralioides HOM05D004285 ORTHO05D005176 8.7e-69 264.2 229 67.7
Sabra05G0055600 Salix brachista HOM05D004285 ORTHO05D005176 1.1e-68 263.8 221 71.0
FvH4_4g10490 Fragaria vesca HOM05D004285 ORTHO05D005176 1.5e-68 263.5 222 68.0
HanXRQChr09g0241311 Helianthus annuus HOM05D004285 ORTHO05D005176 1.5e-68 263.5 218 66.5
Lj4g0011662 Lotus japonicus HOM05D004285 ORTHO05D005176 1.5e-68 263.5 220 66.8
Psat5g059640 Pisum sativum HOM05D004285 ORTHO05D005176 1.5e-68 263.5 219 68.9
CiPaw.04G079800 Carya illinoinensis HOM05D004285 ORTHO05D005176 3.3e-68 262.3 223 73.1
FAN06G1556 Fragaria x ananassa HOM05D004285 ORTHO05D005176 3.3e-68 262.3 218 74.3
Glyma.06G155800 Glycine max HOM05D004285 ORTHO05D005176 3.3e-68 262.3 218 68.3
MD15G1135100 Malus domestica HOM05D004285 ORTHO05D005176 4.3e-68 261.9 221 67.9
PSO170G3147 Papaver somniferum HOM05D004285 ORTHO05D005176 5.6e-68 261.5 228 65.4
ECA234G4310 Erigeron canadensis HOM05D004285 ORTHO05D005176 7.3e-68 261.2 222 65.8
FvH4_7g03820 Fragaria vesca HOM05D004285 ORTHO05D005176 9.6e-68 260.8 218 73.9
Glyma.04G210200 Glycine max HOM05D004285 ORTHO05D005176 9.6e-68 260.8 218 67.9
Nitab4.5_0009744g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 9.6e-68 260.8 178 78.7
Potri.007G101500 Populus trichocarpa HOM05D004285 ORTHO05D005176 9.6e-68 260.8 223 73.1
TAR628G0040 Trochodendron aralioides HOM05D004285 ORTHO05D005176 9.6e-68 260.8 229 65.5
FAN10G2762 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.6e-67 260.0 218 73.9
Sopen12g032480 Solanum pennellii HOM05D004285 ORTHO05D005176 2.8e-67 259.2 228 68.4
unitig_736.g22477 Utricularia gibba HOM05D004285 ORTHO05D005176 2.8e-67 259.2 220 66.8
Ciclev10002389m.g Citrus clementina HOM05D004285 ORTHO05D005176 4.8e-67 258.5 226 66.8
FAN22G0010 Fragaria x ananassa HOM05D004285 ORTHO05D005176 6.2e-67 258.1 222 67.6
CAN.G566.38 Capsicum annuum HOM05D004285 ORTHO05D005176 8.1e-67 257.7 228 69.3
Dinv12984 Davidia involucrata HOM05D004285 ORTHO05D005176 1.1e-66 257.3 228 64.9
Duzib264G0533 Durio zibethinus HOM05D004285 ORTHO05D005176 1.1e-66 257.3 226 66.4
Solyc12g096650.2 Solanum lycopersicum HOM05D004285 ORTHO05D005176 1.1e-66 257.3 228 72.4
ATR0706G129 Amborella trichopoda HOM05D004285 ORTHO05D005176 1.4e-66 256.9 222 65.8
Duzib187G0355 Durio zibethinus HOM05D004285 ORTHO05D005176 1.4e-66 256.9 227 66.5
VMungo1309G0657 Vigna mungo HOM05D004285 ORTHO05D005176 1.8e-66 256.5 209 68.9
Sabra07G0083700 Salix brachista HOM05D004285 ORTHO05D005176 2.4e-66 256.1 186 75.8
Sc03g0010160 Simmondsia chinensis HOM05D004285 ORTHO05D005176 2.4e-66 256.1 219 65.8
Nn5g28435 Nelumbo nucifera HOM05D004285 ORTHO05D005176 3.1e-66 255.8 243 66.7
arahy.Tifrunner.gnm1.ann1.GQS5IM Arachis hypogaea HOM05D004285 ORTHO05D005176 4.0e-66 255.4 185 78.4
DCAR_001476 Daucus carota HOM05D004285 ORTHO05D005176 4.0e-66 255.4 219 70.3
CANSAT80G1716 Cannabis sativa HOM05D004285 ORTHO05D005176 5.3e-66 255.0 223 68.2
MBI04_g38139_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 6.9e-66 254.6 179 77.1
Medtr3g096680 Medicago truncatula HOM05D004285 ORTHO05D005176 9.0e-66 254.2 241 61.0
CSS0033426 Camellia sinensis var. sinensis HOM05D004285 ORTHO05D005176 1.2e-65 253.8 228 63.6
TPR.G24222 Trifolium pratense HOM05D004285 ORTHO05D005176 2.0e-65 253.1 210 73.3
Haze_25379 Corylus avellana HOM05D004285 ORTHO05D005176 9.9e-65 250.8 254 61.0
PSO407G0164 Papaver somniferum HOM05D004285 ORTHO05D005176 2.2e-64 249.6 174 76.4
Lsat_1_v5_gn_4_38601 Lactuca sativa HOM05D004285 ORTHO05D005176 1.1e-63 247.3 220 69.1
CARHR204160 Cardamine hirsuta HOM05D004285 ORTHO05D005176 3.2e-63 245.7 184 79.3
VMungo1309G3080 Vigna mungo HOM05D004285 ORTHO05D005176 1.6e-62 243.4 206 68.0
Aqoxy6G00309 Aquilegia oxysepala HOM05D004285 ORTHO05D005176 6.0e-62 241.5 224 64.7
Actinidia20030 Actinidia chinensis HOM05D004285 ORTHO05D005176 7.9e-62 241.1 227 62.6
Eucgr.H05139 Eucalyptus grandis HOM05D004285 ORTHO05D005176 3.9e-61 238.8 223 65.9
HPP92_022156 Vanilla planifolia HOM05D004285 ORTHO05D005176 3.3e-60 235.7 180 70.0
Zm00001eb246180 Zea mays HOM05D004285 ORTHO05D005176 4.3e-60 235.3 185 71.4
Nitab4.5_0008205g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 5.6e-60 235.0 228 64.9
Zm00001eb183830 Zea mays HOM05D004285 ORTHO05D005176 5.6e-60 235.0 184 72.3
Os02g0596500 Oryza sativa ssp. japonica HOM05D004285 ORTHO05D005176 7.4e-60 234.6 229 63.3
Rhsim08G0027500 Rhododendron simsii HOM05D004285 ORTHO05D005176 4.8e-59 231.9 170 80.0
CDE08G1470 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 5.3e-58 228.4 174 71.3
CDE02G0727 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 2.0e-57 226.5 230 58.7
SMO232G0091 Selaginella moellendorffii HOM05D004285 ORTHO05D005176 7.6e-57 224.6 212 59.4
CAN.G607.7 Capsicum annuum HOM05D004285 ORTHO05D005176 1.4e-55 220.3 254 57.5
Peaxi162Scf01205g00036 Petunia axillaris HOM05D004285 ORTHO05D005176 5.5e-55 218.4 224 58.9
Oeu022909.3 Olea europaea HOM05D004285 ORTHO05D005176 4.6e-54 215.3 186 71.0
AagrBONN_evm.TU.Sc2ySwM_228.3779 Anthoceros agrestis HOM05D004285 ORTHO05D005176 2.5e-52 209.5 193 58.5
C09p68060 Brassica napus HOM05D004285 ORTHO05D005176 3.3e-52 209.1 132 95.5
C09p68120 Brassica napus HOM05D004285 ORTHO05D005176 3.3e-52 209.1 132 95.5
FAN12G0473 Fragaria x ananassa HOM05D004285 ORTHO05D005176 7.4e-52 208.0 350 42.9
Nitab4.5_0000013g0100 Nicotiana tabacum HOM05D004285 ORTHO05D005176 7.4e-52 208.0 197 61.9
vmacro18460 Vaccinium macrocarpon HOM05D004285 ORTHO05D005176 7.4e-52 208.0 222 62.2
Mapoly0073s0065 Marchantia polymorpha HOM05D004285 ORTHO05D005176 1.8e-50 203.4 186 57.0
ClCG04G001580 Citrullus lanatus HOM05D004285 ORTHO05D005176 4.5e-49 198.7 194 60.8
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 1.3e-48 197.2 153 69.9
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 3.8e-48 195.7 176 65.3
FAN03G0757 Fragaria x ananassa HOM05D004285 ORTHO05D005176 6.5e-48 194.9 221 60.6
AagrBONN_evm.TU.Sc2ySwM_117.2591 Anthoceros agrestis HOM05D004285 ORTHO05D005176 1.9e-47 193.4 178 57.3
Pp3c2_32100 Physcomitrium patens HOM05D004285 ORTHO05D005176 1.9e-44 183.3 175 63.4
Lj2A489T51 Lonicera japonica HOM05D004285 ORTHO05D005176 7.4e-44 181.4 134 72.4
CBR_g70720 Chara braunii HOM05D004285 ORTHO05D005176 3.8e-40 169.1 180 51.7
FAN12G2135 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.1e-34 151.0 319 37.6
Aa31LG4G3130 Aethionema arabicum HOM05D004285 ORTHO05D005176 6.5e-32 141.7 152 59.2
MBI18_g28836_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 6.5e-32 141.7 103 75.7
AL697U10010 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 3.3e-28 129.4 85 82.4
MBI04_g07580_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 3.3e-28 129.4 103 73.8
BolC9t59508H Brassica oleracea HOM05D004285 ORTHO05D005176 7.4e-28 128.3 124 70.2
Cre13.g589700 Chlamydomonas reinhardtii HOM05D004285 ORTHO05D005176 7.4e-28 128.3 174 44.8
C09p67470 Brassica napus HOM05D004285 ORTHO05D005176 1.3e-27 127.5 124 70.2
Migut.G00927 Erythranthe guttata HOM05D004285 ORTHO05D005176 4.1e-26 122.5 85 77.6
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 2.6e-25 119.8 87 79.3
FAN07G1696 Fragaria x ananassa HOM05D004285 ORTHO05D005176 2.9e-24 116.3 221 40.7
AL1G38920 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 5.2e-21 105.5 73 78.1
Actinidia06578 Actinidia chinensis HOM05D004285 ORTHO05D005176 7.4e-20 101.7 76 69.7
AagrBONN_evm.TU.Sc2ySwM_344.1024 Anthoceros agrestis HOM05D004285 ORTHO05D005176 4.5e-17 92.4 87 59.8
C09p09560 Brassica napus HOM05D004285 ORTHO05D005176 2.5e-15 86.7 140 46.4
Haze_26675 Corylus avellana HOM05D004285 ORTHO05D005176 2.5e-15 86.7 187 33.2
MCO14G274 Micromonas commoda HOM05D004285 ORTHO05D005176 1.8e-13 80.5 149 34.9
Cfa026504 Carpinus fangiana HOM05D004285 ORTHO05D005176 3.0e-13 79.7 184 32.6
PRCOL_00005830 Prasinoderma coloniale HOM05D004285 ORTHO05D005176 4.0e-13 79.3 170 32.4
AagrBONN_evm.TU.Sc2ySwM_344.1025 Anthoceros agrestis HOM05D004285 ORTHO05D005176 2.4e-10 70.1 53 62.3
BolC9t53867H Brassica oleracea HOM05D004285 ORTHO05D005176 1.2e-09 67.8 105 47.6
CARHR204170 Cardamine hirsuta HOM05D004285 ORTHO05D005176 3.5e-09 66.2 35 91.4
A08p30650 Brassica napus HOM05D004285 ORTHO05D005176 1.7e-08 63.9 53 66.0
A06p05780 Brassica napus HOM05D004285 ORTHO05D005176 7.2e-07 58.5 55 58.2
A06p32110 Brassica napus HOM05D004285 ORTHO05D005176 1.2e-06 57.8 55 58.2
arahy.Tifrunner.gnm1.ann1.JHS34B Arachis hypogaea HOM05D001726 ORTHO05D001761 2.1e-06 57.0 181 28.2
arahy.Tifrunner.gnm1.ann1.U9GDAA Arachis hypogaea HOM05D001726 ORTHO05D001761 2.1e-06 57.0 181 28.2
Zm00001eb061610 Zea mays HOM05D001726 ORTHO05D001761 4.7e-06 55.8 169 29.0
Zm00001eb358220 Zea mays HOM05D001726 ORTHO05D001761 8.0e-06 55.1 169 29.0


User provided reference genes

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