Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 3.4e-197 691.4 335 100.0
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 1.5e-184 649.4 336 94.3
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 2.8e-183 645.2 336 93.8
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 2.2e-180 635.6 337 92.9
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 2.9e-180 635.2 337 92.9
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 1.9e-179 632.5 342 90.4
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 5.4e-179 630.9 343 89.5
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 7.8e-178 627.1 343 90.1
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 7.8e-178 627.1 343 90.1
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 1.3e-177 626.3 343 89.5
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 8.6e-177 623.6 381 82.7
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 5.6e-176 620.9 337 90.5
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 4.0e-174 614.8 339 88.2
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 7.6e-173 610.5 337 88.1
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 2.9e-172 608.6 337 88.4
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 3.2e-171 605.1 332 88.0
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 9.3e-171 603.6 338 87.0
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 8.1e-159 563.9 342 80.7
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 4.8e-151 538.1 340 76.2
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 3.9e-137 491.9 356 66.0
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.4e-129 466.8 357 62.5
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 4.8e-127 458.4 354 64.1
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 6.3e-127 458.0 344 61.6
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 8.2e-127 457.6 356 62.6
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 1.4e-126 456.8 356 61.2
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.8e-126 456.4 350 62.3
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 4.1e-126 455.3 359 61.6
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 5.3e-126 454.9 359 61.3
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 5.3e-126 454.9 340 64.7
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.2e-125 453.8 344 60.2
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 1.5e-125 453.4 360 60.0
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 2.0e-125 453.0 343 61.2
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 2.0e-125 453.0 359 60.7
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.6e-125 452.6 347 60.5
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.6e-125 452.6 344 61.3
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 2.6e-125 452.6 330 64.2
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 3.4e-125 452.2 352 62.5
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 5.9e-125 451.4 359 60.7
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 5.9e-125 451.4 358 62.3
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 7.7e-125 451.1 359 60.4
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 7.7e-125 451.1 360 60.3
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 2.2e-124 449.5 360 60.3
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 6.5e-124 448.0 353 60.6
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.1e-123 447.2 342 61.4
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.4e-123 446.8 362 59.1
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 1.4e-123 446.8 355 59.4
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.5e-123 446.0 354 60.2
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 3.2e-123 445.7 339 61.1
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 5.5e-123 444.9 362 59.1
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 1.2e-122 443.7 343 60.1
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 2.7e-122 442.6 335 62.4
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 3.6e-122 442.2 344 59.6
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 3.6e-122 442.2 362 59.4
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 4.7e-122 441.8 362 58.6
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 4.7e-122 441.8 363 58.1
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 7.9e-122 441.0 334 61.1
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.8e-121 439.9 371 59.3
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.9e-121 438.7 359 59.1
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 5.2e-121 438.3 358 58.9
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 1.1e-120 437.2 344 60.2
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.5e-120 436.8 365 59.7
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 2.6e-120 436.0 353 60.6
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 4.4e-120 435.3 332 61.4
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 7.4e-120 434.5 354 60.5
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 9.7e-120 434.1 342 60.5
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 9.7e-120 434.1 354 57.6
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 3.7e-119 432.2 359 58.2
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 3.7e-119 432.2 354 58.8
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 3.7e-119 432.2 354 58.8
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.4e-118 429.5 350 60.9
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 5.3e-118 428.3 348 60.1
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 7.0e-118 427.9 352 59.4
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.6e-117 426.8 351 58.4
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 5.9e-117 424.9 403 52.1
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.3e-116 423.7 358 57.5
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 2.2e-116 422.9 351 57.8
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 1.1e-115 420.6 349 58.7
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 1.1e-115 420.6 366 56.8
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 4.2e-115 418.7 358 56.1
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 9.4e-115 417.5 355 58.3
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 2.1e-114 416.4 350 57.4
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 8.0e-114 414.5 366 56.3
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 5.2e-113 411.8 318 62.6
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 4.4e-112 408.7 433 49.2
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 7.5e-112 407.9 340 57.4
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 7.5e-112 407.9 353 57.8
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 2.2e-111 406.4 428 50.0
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 4.8e-111 405.2 367 54.0
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.2e-109 400.6 321 61.7
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 1.5e-107 393.7 359 54.3
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 5.5e-107 391.7 481 45.5
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.8e-105 386.7 352 54.0
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 5.2e-105 385.2 282 63.1
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 7.5e-104 381.3 247 68.4
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.2e-101 374.0 339 53.4
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 5.9e-101 371.7 309 58.3
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 7.7e-101 371.3 362 53.3
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 1.7e-100 370.2 363 50.1
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 7.2e-99 364.8 361 47.4
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 5.2e-97 358.6 359 52.1
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 3.4e-96 355.9 384 46.6
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 1.7e-95 353.6 357 51.8
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.5e-91 340.5 348 50.0
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 1.9e-91 340.1 358 50.3
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 9.5e-91 337.8 317 53.9
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 8.0e-90 334.7 246 65.0
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.7e-84 317.0 419 39.1
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 8.6e-84 314.7 214 66.4
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 6.8e-81 305.1 291 55.0
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.0e-80 303.5 208 66.8
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 2.3e-76 290.0 412 38.3
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 5.6e-75 285.4 340 42.4
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 9.5e-75 284.6 376 40.4
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 1.6e-74 283.9 156 77.6
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 4.0e-73 279.3 285 48.8
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 1.4e-70 270.8 183 80.3
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 1.9e-62 243.8 344 41.6
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 4.1e-62 242.7 133 78.9
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 3.3e-59 233.0 126 77.8
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 3.8e-55 219.5 226 51.8
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 9.6e-51 204.9 237 45.6
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 9.6e-51 204.9 237 45.6
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 9.0e-41 171.8 178 48.9
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 2.6e-40 170.2 177 48.6
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 2.1e-37 160.6 129 51.2
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 3.5e-37 159.8 83 81.9
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 8.2e-34 148.7 151 51.7
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 2.5e-27 127.1 76 75.0
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 1.6e-21 107.8 240 31.7
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 6.3e-18 95.9 125 40.8
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 4.1e-17 93.2 72 56.9
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.2e-15 87.4 63 60.3
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.4e-06 58.2 102 35.3


User provided reference genes

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