Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36234 Brassica carinata HOM05D004593 ORTHO05D003703 3.6e-149 531.6 269 100.0
BcaB08g36241 Brassica carinata HOM05D004593 ORTHO05D003703 8.1e-101 370.9 255 79.2
A10p16850 Brassica napus HOM05D004593 ORTHO05D003703 3.2e-89 332.4 254 72.0
BraA10t43763Z Brassica rapa HOM05D004593 ORTHO05D003703 7.1e-89 331.3 254 71.3
A10p16840 Brassica napus HOM05D004593 ORTHO05D003703 2.5e-86 322.8 282 64.5
BraA10t43762Z Brassica rapa HOM05D004593 ORTHO05D003703 1.6e-85 320.1 253 68.4
BcaB08g36243 Brassica carinata HOM05D004593 ORTHO05D003703 1.0e-79 300.8 257 65.4
BcaC04g19750 Brassica carinata HOM05D004593 ORTHO05D003703 3.0e-79 299.3 254 65.4
C09p52010 Brassica napus HOM05D004593 ORTHO05D003703 3.0e-79 299.3 254 65.4
BolC9t58063H Brassica oleracea HOM05D004593 ORTHO05D003703 3.0e-79 299.3 254 65.4
BraA10t43765Z Brassica rapa HOM05D004593 ORTHO05D003703 5.3e-76 288.5 256 62.9
A10p16860 Brassica napus HOM05D004593 ORTHO05D003703 3.4e-75 285.8 256 62.9
BcaC04g19751 Brassica carinata HOM05D004593 ORTHO05D003703 1.0e-71 274.2 262 59.9
BolC9t58062H Brassica oleracea HOM05D004593 ORTHO05D003703 1.0e-71 274.2 262 59.9
Sp6g21310 Schrenkiella parvula HOM05D004593 ORTHO05D003703 2.6e-67 259.6 258 57.0
BcaB08g36239 Brassica carinata HOM05D004593 ORTHO05D003703 1.4e-63 247.3 255 56.1
C09p52000 Brassica napus HOM05D004593 ORTHO05D003703 1.8e-60 236.9 262 55.0
Sp1g28540 Schrenkiella parvula HOM05D004593 ORTHO05D003703 4.7e-56 222.2 223 55.6
BcaB05g22526 Brassica carinata HOM05D004593 ORTHO05D003703 5.3e-52 208.8 234 50.9
Thhalv10015334m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 7.0e-52 208.4 226 51.8
A10p16810 Brassica napus HOM05D004593 ORTHO05D003703 9.1e-52 208.0 217 53.5
Thhalv10014036m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 2.6e-51 206.5 218 52.3
CARHR157270 Cardamine hirsuta HOM05D004593 ORTHO05D003703 3.5e-51 206.1 209 54.1
BcaC01g06509 Brassica carinata HOM05D004593 ORTHO05D003703 1.3e-50 204.1 263 48.3
A02p07020 Brassica napus HOM05D004593 ORTHO05D003703 1.3e-50 204.1 223 52.0
C09p51990 Brassica napus HOM05D004593 ORTHO05D003703 1.3e-50 204.1 206 54.9
BolC9t58061H Brassica oleracea HOM05D004593 ORTHO05D003703 1.3e-50 204.1 206 54.9
Thhalv10015341m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 2.2e-50 203.4 210 53.3
BraA02t05782Z Brassica rapa HOM05D004593 ORTHO05D003703 2.9e-50 203.0 223 52.0
BraA10t43760Z Brassica rapa HOM05D004593 ORTHO05D003703 2.9e-50 203.0 216 52.8
BcaC03g13997 Brassica carinata HOM05D004593 ORTHO05D003703 8.5e-50 201.4 249 47.8
C02p12360 Brassica napus HOM05D004593 ORTHO05D003703 8.5e-50 201.4 249 47.8
BolC2t07336H Brassica oleracea HOM05D004593 ORTHO05D003703 8.5e-50 201.4 249 47.8
BcaB08g36237 Brassica carinata HOM05D004593 ORTHO05D003703 2.7e-48 196.4 194 57.7
Thhalv10015510m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 6.1e-48 195.3 204 52.5
BcaC01g06510 Brassica carinata HOM05D004593 ORTHO05D003703 8.0e-48 194.9 263 47.1
Thhalv10011949m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 3.0e-47 193.0 198 54.0
C03p13470 Brassica napus HOM05D004593 ORTHO05D003703 1.2e-46 191.0 263 48.3
Sp6g20950 Schrenkiella parvula HOM05D004593 ORTHO05D003703 1.5e-46 190.7 244 48.0
BolC3t13805H Brassica oleracea HOM05D004593 ORTHO05D003703 4.4e-46 189.1 261 46.7
C03p13480 Brassica napus HOM05D004593 ORTHO05D003703 5.7e-46 188.7 261 46.7
BraA03t10471Z Brassica rapa HOM05D004593 ORTHO05D003703 5.7e-46 188.7 228 51.3
A03p11590 Brassica napus HOM05D004593 ORTHO05D003703 1.3e-45 187.6 231 50.2
A10p16490 Brassica napus HOM05D004593 ORTHO05D003703 1.7e-45 187.2 204 52.0
BraA10t43732Z Brassica rapa HOM05D004593 ORTHO05D003703 1.7e-45 187.2 204 52.0
BcaC04g19796 Brassica carinata HOM05D004593 ORTHO05D003703 2.8e-45 186.4 204 51.5
BcaB01g04563 Brassica carinata HOM05D004593 ORTHO05D003703 1.4e-44 184.1 226 50.4
C09p51570 Brassica napus HOM05D004593 ORTHO05D003703 1.8e-44 183.7 204 51.0
BolC9t58016H Brassica oleracea HOM05D004593 ORTHO05D003703 1.8e-44 183.7 204 51.0
BcaB08g36269 Brassica carinata HOM05D004593 ORTHO05D003703 2.4e-44 183.3 204 50.5
AL8G36790 Arabidopsis lyrata HOM05D004593 ORTHO05D003703 3.1e-44 183.0 198 50.5
A03p11580 Brassica napus HOM05D004593 ORTHO05D003703 3.1e-44 183.0 228 50.9
AL71U10060 Arabidopsis lyrata HOM05D004593 ORTHO05D003703 4.1e-44 182.6 198 51.0
AL8G36700 Arabidopsis lyrata HOM05D004593 ORTHO05D003703 4.1e-44 182.6 198 51.0
BcaNung07341 Brassica carinata HOM05D004593 ORTHO05D003703 9.1e-44 181.4 198 51.5
C09p52610 Brassica napus HOM05D004593 ORTHO05D003703 9.1e-44 181.4 198 51.5
BraA03t10472Z Brassica rapa HOM05D004593 ORTHO05D003703 9.1e-44 181.4 234 49.6
BcaB08g36222 Brassica carinata HOM05D004593 ORTHO05D003703 1.2e-43 181.0 209 48.8
BolC9t58127H Brassica oleracea HOM05D004593 ORTHO05D003703 1.2e-43 181.0 198 51.5
CARHR273750 Cardamine hirsuta HOM05D004593 ORTHO05D003703 1.2e-43 181.0 199 51.8
Carub.0008s1994 Capsella rubella HOM05D004593 ORTHO05D003703 3.5e-43 179.5 210 47.1
AT5G59280 Arabidopsis thaliana HOM05D004593 ORTHO05D003703 5.9e-43 178.7 206 49.5
Thhalv10015422m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 7.7e-43 178.3 205 50.2
Thhalv10016021m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 7.7e-43 178.3 205 50.2
BolC3t13804H Brassica oleracea HOM05D004593 ORTHO05D003703 1.3e-42 177.6 263 45.2
A10p17250 Brassica napus HOM05D004593 ORTHO05D003703 2.2e-42 176.8 198 50.0
C03p13460 Brassica napus HOM05D004593 ORTHO05D003703 5.0e-42 175.6 263 43.7
BolC3t13803H Brassica oleracea HOM05D004593 ORTHO05D003703 6.5e-42 175.3 267 43.4
BraA10t43809Z Brassica rapa HOM05D004593 ORTHO05D003703 1.1e-41 174.5 198 49.5
AL8G35710 Arabidopsis lyrata HOM05D004593 ORTHO05D003703 2.5e-41 173.3 213 47.9
CARHR273860 Cardamine hirsuta HOM05D004593 ORTHO05D003703 2.5e-41 173.3 174 51.7
BraA03t10473Z Brassica rapa HOM05D004593 ORTHO05D003703 4.2e-41 172.6 238 49.6
BcaB01g04566 Brassica carinata HOM05D004593 ORTHO05D003703 5.5e-41 172.2 278 43.5
BolC3t13808H Brassica oleracea HOM05D004593 ORTHO05D003703 7.2e-41 171.8 226 50.9
Carub.0008s2091 Capsella rubella HOM05D004593 ORTHO05D003703 7.2e-41 171.8 198 48.5
AT5G60180 Arabidopsis thaliana HOM05D004593 ORTHO05D003703 9.4e-41 171.4 198 47.5
A03p11600 Brassica napus HOM05D004593 ORTHO05D003703 9.4e-41 171.4 230 50.4
AT5G60110 Arabidopsis thaliana HOM05D004593 ORTHO05D003703 1.2e-40 171.0 198 47.5
BcaC01g06512 Brassica carinata HOM05D004593 ORTHO05D003703 2.1e-40 170.2 230 50.4
CARHR036840 Cardamine hirsuta HOM05D004593 ORTHO05D003703 2.7e-40 169.9 229 43.7
A10p17000 Brassica napus HOM05D004593 ORTHO05D003703 4.7e-40 169.1 200 47.0
CARHR183820 Cardamine hirsuta HOM05D004593 ORTHO05D003703 4.7e-40 169.1 199 49.2
C03p13530 Brassica napus HOM05D004593 ORTHO05D003703 1.0e-39 167.9 226 49.6
BraA03t10446Z Brassica rapa HOM05D004593 ORTHO05D003703 3.0e-39 166.4 200 47.5
C09p52250 Brassica napus HOM05D004593 ORTHO05D003703 1.2e-38 164.5 213 45.5
A08p10760 Brassica napus HOM05D004593 ORTHO05D003703 3.4e-38 162.9 200 47.0
BraA08t33073Z Brassica rapa HOM05D004593 ORTHO05D003703 3.4e-38 162.9 200 47.0
A03p11320 Brassica napus HOM05D004593 ORTHO05D003703 7.5e-38 161.8 200 47.0
Carub.0008s2083 Capsella rubella HOM05D004593 ORTHO05D003703 7.5e-38 161.8 219 43.8
C03p13050 Brassica napus HOM05D004593 ORTHO05D003703 1.3e-37 161.0 200 46.0
BraA03t10445Z Brassica rapa HOM05D004593 ORTHO05D003703 2.2e-37 160.2 200 46.5
A02p41070 Brassica napus HOM05D004593 ORTHO05D003703 4.8e-37 159.1 115 67.8
A03p54980 Brassica napus HOM05D004593 ORTHO05D003703 4.8e-37 159.1 115 67.8
BcaC04g19662 Brassica carinata HOM05D004593 ORTHO05D003703 1.8e-36 157.1 198 47.5
C09p52660 Brassica napus HOM05D004593 ORTHO05D003703 1.8e-36 157.1 198 47.5
BolC9t58133H Brassica oleracea HOM05D004593 ORTHO05D003703 1.8e-36 157.1 198 47.5
BcaC04g19627 Brassica carinata HOM05D004593 ORTHO05D003703 2.4e-36 156.8 197 47.2
BraA10t43816Z Brassica rapa HOM05D004593 ORTHO05D003703 1.6e-35 154.1 198 46.5
A10p17310 Brassica napus HOM05D004593 ORTHO05D003703 2.7e-35 153.3 229 41.9
AT1G21620 Arabidopsis thaliana HOM05D004593 ORTHO05D003703 2.5e-33 146.7 209 43.1
C03p13070 Brassica napus HOM05D004593 ORTHO05D003703 9.5e-33 144.8 187 43.9
BcaC01g06511 Brassica carinata HOM05D004593 ORTHO05D003703 2.1e-32 143.7 253 43.1
AT1G35850 Arabidopsis thaliana HOM05D004593 ORTHO05D003703 6.8e-31 138.7 166 44.0
A10p16830 Brassica napus HOM05D004593 ORTHO05D003703 6.8e-31 138.7 117 59.0
C03p13510 Brassica napus HOM05D004593 ORTHO05D003703 1.3e-29 134.4 142 50.0
BolC3t13806H Brassica oleracea HOM05D004593 ORTHO05D003703 1.3e-29 134.4 142 50.0
CARHR285940 Cardamine hirsuta HOM05D004593 ORTHO05D003703 2.0e-27 127.1 155 44.5
BolC3t13767H Brassica oleracea HOM05D004593 ORTHO05D003703 4.5e-27 125.9 275 33.5
Aa31LG1G11610 Aethionema arabicum HOM05D004593 ORTHO05D003703 1.7e-26 124.0 194 35.6
BcaB08g36242 Brassica carinata HOM05D004593 ORTHO05D003703 1.0e-23 114.8 111 49.5
Carub.0008s2528 Capsella rubella HOM05D004593 ORTHO05D003703 4.0e-23 112.8 192 37.5
Aa31LG1G12760 Aethionema arabicum HOM05D004593 ORTHO05D003703 1.5e-22 110.9 204 33.8
AL8G41860 Arabidopsis lyrata HOM05D004593 ORTHO05D003703 2.6e-22 110.2 197 37.1
THA.LOC104818524 Tarenaya hassleriana HOM05D004593 ORTHO05D003703 1.7e-21 107.5 173 38.2
THA.LOC104818528 Tarenaya hassleriana HOM05D004593 ORTHO05D003703 2.2e-21 107.1 173 38.2
THA.LOC104818525 Tarenaya hassleriana HOM05D004593 ORTHO05D003703 2.9e-21 106.7 173 38.2
THA.LOC104818529 Tarenaya hassleriana HOM05D004593 ORTHO05D003703 6.4e-21 105.5 173 38.2
THA.LOC104818526 Tarenaya hassleriana HOM05D004593 ORTHO05D003703 8.3e-21 105.1 173 38.2
Aa31LG2G18740 Aethionema arabicum HOM05D004593 ORTHO05D003703 1.2e-19 101.3 111 42.3
C03p15920 Brassica napus HOM05D004593 ORTHO05D003703 1.2e-19 101.3 200 37.5
BolC3t14022H Brassica oleracea HOM05D004593 ORTHO05D003703 1.2e-19 101.3 200 37.5
BolC3t13768H Brassica oleracea HOM05D004593 ORTHO05D003703 1.6e-19 100.9 115 46.1
BcaB01g06359 Brassica carinata HOM05D004593 ORTHO05D003703 5.9e-19 99.0 115 43.5
Sp6g21810 Schrenkiella parvula HOM05D004593 ORTHO05D003703 8.9e-15 85.1 91 48.4
Atru.chr1.2353 Acer truncatum HOM05D000867 ORTHO05D003703 8.3e-13 78.6 187 28.3
Thhalv10015818m.g Eutrema salsugineum HOM05D004593 ORTHO05D003703 8.3e-13 78.6 236 28.0
BcaB05g22575 Brassica carinata HOM05D004593 ORTHO05D003703 2.0e-11 73.9 87 40.2
AT5G09610 Arabidopsis thaliana HOM05D004593 ORTHO05D003703 3.5e-11 73.2 226 27.0
Potri.011G144000 Populus trichocarpa HOM05D000867 ORTHO05D003703 6.0e-11 72.4 188 26.6
Sabra11G0128300 Salix brachista HOM05D000867 ORTHO05D003703 7.8e-11 72.0 189 25.9
Potri.001G457700 Populus trichocarpa HOM05D000867 ORTHO05D003703 1.7e-10 70.9 187 26.2
TWI74G1103 Tripterygium wilfordii HOM05D000867 ORTHO05D003703 1.7e-10 70.9 198 24.2
Migut.M01420 Erythranthe guttata HOM05D000867 ORTHO05D003703 2.3e-10 70.5 149 31.5
BolC2t07320H Brassica oleracea HOM05D004593 ORTHO05D003703 3.0e-10 70.1 130 34.6
Sp6g21760 Schrenkiella parvula HOM05D004593 ORTHO05D003703 3.0e-10 70.1 86 52.3
SGA_v2.0_scaffold4G01859 Striga asiatica HOM05D000867 ORTHO05D003703 3.0e-10 70.1 205 27.3
FAN21G2537 Fragaria x ananassa HOM05D000867 ORTHO05D003703 3.9e-10 69.7 246 28.9
FAN25G2107 Fragaria x ananassa HOM05D000867 ORTHO05D003703 8.6e-10 68.6 244 28.3
FvH4_3g00680 Fragaria vesca HOM05D000867 ORTHO05D003703 1.1e-09 68.2 235 26.0
Gohir.D02G206600 Gossypium hirsutum HOM05D000867 ORTHO05D000864 1.1e-09 68.2 180 27.2
Gorai.005G234000 Gossypium raimondii HOM05D000867 ORTHO05D000864 1.9e-09 67.4 180 27.2
RcHm_v2.0_Chr5g0000911 Rosa chinensis HOM05D000867 ORTHO05D003703 2.5e-09 67.0 226 27.4
C02p12170 Brassica napus HOM05D004593 ORTHO05D003703 3.3e-09 66.6 139 32.4
C05p00590 Brassica napus HOM05D004593 ORTHO05D017396 4.3e-09 66.2 225 27.1
C03p13520 Brassica napus HOM05D004593 ORTHO05D040362 2.8e-08 63.5 122 42.6
BolC3t13807H Brassica oleracea HOM05D004593 ORTHO05D040362 2.8e-08 63.5 122 42.6
BolC5t28848H Brassica oleracea HOM05D004593 ORTHO05D017396 2.8e-08 63.5 225 26.2
Ciclev10023979m.g Citrus clementina HOM05D000867 ORTHO05D003703 4.7e-08 62.8 188 27.1
CARHR203770 Cardamine hirsuta HOM05D004593 ORTHO05D003703 6.2e-08 62.4 182 28.0
ATR0753G057 Amborella trichopoda HOM05D000867 ORTHO05D000864 1.4e-07 61.2 166 24.7
BraA10t43761Z Brassica rapa HOM05D004593 ORTHO05D003703 3.1e-07 60.1 40 67.5
Actinidia39278 Actinidia chinensis HOM05D000867 ORTHO05D003703 5.2e-07 59.3 208 25.5
Ciclev10023507m.g Citrus clementina HOM05D000867 ORTHO05D003703 8.9e-07 58.5 186 27.4
DCAR_004892 Daucus carota HOM05D000867 ORTHO05D003703 8.9e-07 58.5 187 21.9
AL3G40980 Arabidopsis lyrata HOM05D004593 ORTHO05D003703 1.2e-06 58.2 71 50.7
AL54U10010 Arabidopsis lyrata HOM05D004593 ORTHO05D003703 1.2e-06 58.2 71 50.7
Nn1g05337 Nelumbo nucifera HOM05D000867 ORTHO05D000864 1.2e-06 58.2 207 24.6
A09p33820 Brassica napus HOM05D004593 ORTHO05D003703 2.0e-06 57.4 52 53.8
BcaB05g22576 Brassica carinata HOM05D004593 ORTHO05D003703 3.4e-06 56.6 80 42.5
Carub.0003s2764 Capsella rubella HOM05D004593 ORTHO05D003703 3.4e-06 56.6 203 27.1
TWI38G2223 Tripterygium wilfordii HOM05D000867 ORTHO05D003703 3.4e-06 56.6 196 23.5
Migut.N01066 Erythranthe guttata HOM05D000867 ORTHO05D000864 4.4e-06 56.2 124 28.2
Os03g0191700 Oryza sativa ssp. japonica HOM05D000867 ORTHO05D000864 7.5e-06 55.5 166 22.9
QL05p069029 Quercus lobata HOM05D000867 ORTHO05D003703 7.5e-06 55.5 204 24.5
Prupe.1G515100 Prunus persica HOM05D000867 ORTHO05D000864 9.9e-06 55.1 180 25.0
Sp3g21380 Schrenkiella parvula HOM05D004593 ORTHO05D017396 9.9e-06 55.1 220 25.9


User provided reference genes

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