Gene: AT5G59280

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G59280
  • Transcript Identifier AT5G59280.1
  • Gene Type Coding gene
  • Location Chr5 : 23914141-23915139 : negative

Gene Family Information

  • ID HOM05D004593
  • #Genes/#Species 158/12
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G59280.1
  • symbol PUM16
  • Alias APUM16,pumilio 16
  • uniprot Q9FIE9

Descriptions

  • Description pumilio 16
  • Computational description pumilio 16 (PUM16); FUNCTIONS IN: RNA binding, binding; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 17 (TAIR:AT1G35850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010608
IBA
Gene Ontologyposttranscriptional regulation of gene expression1
GO:0006417
IEA
GOA Databaseregulation of translation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IBA
Gene OntologymRNA binding1
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM, IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016024 Armadillo-type fold
IPR001313 Pumilio RNA-binding repeat
IPR011989 Armadillo-like helical
Mapman id Description
35.1 not assigned.annotated