Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36044 Brassica carinata HOM05D000428 ORTHO05D011443 6.6e-63 243.8 118 100.0
BcaB03g16632 Brassica carinata HOM05D000428 ORTHO05D005608 2.5e-14 82.4 95 52.6
BcaB07g31658 Brassica carinata HOM05D000428 ORTHO05D005608 2.5e-14 82.4 95 52.6
BcaB07g31661 Brassica carinata HOM05D000428 ORTHO05D005608 2.5e-14 82.4 95 52.6
BcaC04g22900 Brassica carinata HOM05D000428 ORTHO05D005608 2.5e-14 82.4 95 52.6
A09p11940 Brassica napus HOM05D000428 ORTHO05D005608 2.5e-14 82.4 95 52.6
C09p14060 Brassica napus HOM05D000428 ORTHO05D005608 2.5e-14 82.4 95 52.6
BolC9t54303H Brassica oleracea HOM05D000428 ORTHO05D005608 2.5e-14 82.4 95 52.6
BraA09t36839Z Brassica rapa HOM05D000428 ORTHO05D005608 2.5e-14 82.4 95 52.6
arahy.Tifrunner.gnm1.ann1.ZFLV96 Arachis hypogaea HOM05D000428 ORTHO05D005608 1.3e-13 80.1 70 61.4
A07p02180 Brassica napus HOM05D000428 ORTHO05D005608 1.6e-13 79.7 94 51.1
C07p04290 Brassica napus HOM05D000428 ORTHO05D005608 2.1e-13 79.3 95 50.5
BolC7t40824H Brassica oleracea HOM05D000428 ORTHO05D005608 2.1e-13 79.3 95 50.5
DCAR_025927 Daucus carota HOM05D000428 ORTHO05D005608 2.1e-13 79.3 95 49.5
AL3G51840 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 4.8e-13 78.2 95 50.5
CARHR109120 Cardamine hirsuta HOM05D000428 ORTHO05D005608 4.8e-13 78.2 95 50.5
Aa31LG8G15550 Aethionema arabicum HOM05D000428 ORTHO05D005608 1.1e-12 77.0 95 49.5
AT2G18510 Arabidopsis thaliana HOM05D000428 ORTHO05D005608 1.1e-12 77.0 95 49.5
Thhalv10022741m.g Eutrema salsugineum HOM05D000428 ORTHO05D005608 1.1e-12 77.0 95 49.5
Sp3g31970 Schrenkiella parvula HOM05D000428 ORTHO05D005608 1.1e-12 77.0 95 49.5
Carub.0003s3271 Capsella rubella HOM05D000428 ORTHO05D005608 1.8e-12 76.3 95 50.5
BraA07t28012Z Brassica rapa HOM05D000428 ORTHO05D005608 2.4e-12 75.9 42 83.3
CBR_g39039 Chara braunii HOM05D000428 ORTHO05D005608 2.4e-12 75.9 95 49.5
CiPaw.01G035300 Carya illinoinensis HOM05D000428 ORTHO05D005608 3.1e-12 75.5 95 48.4
Potri.005G125300 Populus trichocarpa HOM05D000428 ORTHO05D005608 3.1e-12 75.5 85 51.8
Sed0010481 Sechium edule HOM05D000428 ORTHO05D005608 3.1e-12 75.5 95 48.4
TWI53G1177 Tripterygium wilfordii HOM05D000428 ORTHO05D005608 3.1e-12 75.5 95 48.4
CDE07G0828 Ceratophyllum demersum HOM05D000428 ORTHO05D005608 6.9e-12 74.3 95 46.3
MBI16_g36970_MAGBIO Magnolia biondii HOM05D000428 ORTHO05D005608 6.9e-12 74.3 96 45.8
Nn1g04186 Nelumbo nucifera HOM05D000428 ORTHO05D005608 6.9e-12 74.3 96 45.8
Oeu037891.1 Olea europaea HOM05D000428 ORTHO05D005608 6.9e-12 74.3 95 48.4
TWI09G0303 Tripterygium wilfordii HOM05D000428 ORTHO05D005608 6.9e-12 74.3 95 48.4
BcaC02g10353 Brassica carinata HOM05D000724 ORTHO05D011443 9.0e-12 73.9 41 82.9
Duzib147G0139 Durio zibethinus HOM05D000428 ORTHO05D005608 9.0e-12 73.9 95 47.4
Nitab4.5_0001456g0190 Nicotiana tabacum HOM05D000428 ORTHO05D005608 9.0e-12 73.9 95 47.4
Peaxi162Scf00759g00212 Petunia axillaris HOM05D000428 ORTHO05D005608 9.0e-12 73.9 95 47.4
Atru.chr12.2192 Acer truncatum HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
CANSAT01G1769 Cannabis sativa HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Cpa.g.sc44.55 Carica papaya HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Cfa018514 Carpinus fangiana HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Ca_17089_v3 Cicer arietinum L. HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
ClCG05G007140 Citrullus lanatus HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Ciclev10025862m.g Citrus clementina HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
COL.COLO4_22108 Corchorus olitorius HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
MELO3C006787.2 Cucumis melo HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
CsaV3_3G015880 Cucumis sativus L. HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Glyma.09G001000 Glycine max HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Glyma.12G240700 Glycine max HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Lj3g0014328 Lotus japonicus HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Lalb_Chr03g0043151 Lupinus albus HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Medtr3g065190 Medicago truncatula HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Phvul.011G214800 Phaseolus vulgaris HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Psat5g120280 Pisum sativum HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
PGR044G2753 Punica granatum HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Sed0000925 Sechium edule HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Hund14143 Selenicereus undatus HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Hund16583 Selenicereus undatus HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Solyc03g118800.3 Solanum lycopersicum HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 46.3
Sopen03g037750 Solanum pennellii HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 46.3
PGSC0003DMG400005746 Solanum tuberosum HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 46.3
THA.LOC104807442 Tarenaya hassleriana HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Thecc.01G038800 Theobroma cacao HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
TPR.G24896 Trifolium pratense HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
VMungo1127G1890 Vigna mungo HOM05D000428 ORTHO05D005608 1.2e-11 73.6 95 47.4
Ah.03g139440 Amaranthus hybridus HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
ATR0733G122 Amborella trichopoda HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
Aqoxy5G01673 Aquilegia oxysepala HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
CSS0012257 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
CSS0018038 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
CDE04G3638 Ceratophyllum demersum HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
AUR62003178 Chenopodium quinoa HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
AUR62007997 Chenopodium quinoa HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
Cc07_g09270 Coffea canephora HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 47.4
Dinv26816 Davidia involucrata HOM05D000001 ORTHO05D010258 1.5e-11 73.2 95 46.3
Dinv39964 Davidia involucrata HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
ECA246G0987 Erigeron canadensis HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
FvH4_7g10600 Fragaria vesca HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
FAN01G3018 Fragaria x ananassa HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
FAN06G0286 Fragaria x ananassa HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
FAN06G3568 Fragaria x ananassa HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
Lj4C198T4 Lonicera japonica HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
MBI16_g35646_MAGBIO Magnolia biondii HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
Mapoly0043s0056 Marchantia polymorpha HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
Pp3c12_13810 Physcomitrium patens HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
RcHm_v2.0_Chr1g0348441 Rosa chinensis HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
Sc03g0000830 Simmondsia chinensis HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
TAR376G0105 Trochodendron aralioides HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
GSVIVG01018991001 Vitis vinifera HOM05D000428 ORTHO05D005608 1.5e-11 73.2 95 46.3
QL06p045519 Quercus lobata HOM05D000428 ORTHO05D005608 2.0e-11 72.8 50 68.0
AL3G46120 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 2.6e-11 72.4 95 46.3
arahy.Tifrunner.gnm1.ann1.FMI53U Arachis hypogaea HOM05D000428 ORTHO05D005608 2.6e-11 72.4 95 46.3
arahy.Tifrunner.gnm1.ann1.IVLA97 Arachis hypogaea HOM05D000428 ORTHO05D005608 2.6e-11 72.4 95 46.3
Eucgr.H02772 Eucalyptus grandis HOM05D000428 ORTHO05D005608 2.6e-11 72.4 95 46.3
MD07G1111200 Malus domestica HOM05D000428 ORTHO05D005608 2.6e-11 72.4 92 46.7
PSO541G5970 Papaver somniferum HOM05D000428 ORTHO05D005608 2.6e-11 72.4 95 46.3
Actinidia19172 Actinidia chinensis HOM05D000428 ORTHO05D005608 3.4e-11 72.0 95 46.3
Actinidia35650 Actinidia chinensis HOM05D000428 ORTHO05D005608 3.4e-11 72.0 95 46.3
EL10Ac6g14921 Beta vulgaris HOM05D000428 ORTHO05D005608 3.4e-11 72.0 95 45.3
Gohir.A10G094825 Gossypium hirsutum HOM05D000428 ORTHO05D005608 3.4e-11 72.0 95 46.3
Gohir.D10G093100 Gossypium hirsutum HOM05D000428 ORTHO05D005608 3.4e-11 72.0 95 46.3
Gorai.011G102300 Gossypium raimondii HOM05D000428 ORTHO05D005608 3.4e-11 72.0 95 46.3
HanXRQChr05g0157731 Helianthus annuus HOM05D000428 ORTHO05D005608 3.4e-11 72.0 95 45.3
Lsat_1_v5_gn_5_24320 Lactuca sativa HOM05D000428 ORTHO05D005608 3.4e-11 72.0 95 45.3
PGSC0003DMG400008934 Solanum tuberosum HOM05D000428 ORTHO05D005608 3.4e-11 72.0 95 45.3
THA.LOC104819794 Tarenaya hassleriana HOM05D000428 ORTHO05D005608 3.4e-11 72.0 95 46.3
MSTRG.23540 Avicennia marina HOM05D000428 ORTHO05D005608 4.5e-11 71.6 95 46.3
Manes.02G141500 Manihot esculenta HOM05D000428 ORTHO05D005608 4.5e-11 71.6 95 46.3
Oeu021560.1 Olea europaea HOM05D000428 ORTHO05D005608 4.5e-11 71.6 43 76.7
Potri.007G028300 Populus trichocarpa HOM05D000428 ORTHO05D005608 4.5e-11 71.6 95 46.3
Sabra07G0024500 Salix brachista HOM05D000428 ORTHO05D005608 4.5e-11 71.6 95 46.3
SGA_v2.0_scaffold85G26723 Striga asiatica HOM05D000428 ORTHO05D005608 4.5e-11 71.6 95 46.3
TAR625G0488 Trochodendron aralioides HOM05D000428 ORTHO05D005608 4.5e-11 71.6 95 45.3
unitig_736.g22538 Utricularia gibba HOM05D000428 ORTHO05D005608 4.5e-11 71.6 95 46.3
HPP92_009245 Vanilla planifolia HOM05D000428 ORTHO05D005608 5.8e-11 71.2 95 43.2
CSS0045131 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 7.6e-11 70.9 95 45.3
Nitab4.5_0003968g0050 Nicotiana tabacum HOM05D000428 ORTHO05D005608 7.6e-11 70.9 43 74.4
PSO675G4237 Papaver somniferum HOM05D000428 ORTHO05D005608 7.6e-11 70.9 95 45.3
CiPaw.02G015800 Carya illinoinensis HOM05D000428 ORTHO05D005608 9.9e-11 70.5 95 46.3
Haze_25371 Corylus avellana HOM05D000428 ORTHO05D005608 9.9e-11 70.5 43 74.4
Duzib264G0582 Durio zibethinus HOM05D000428 ORTHO05D005608 9.9e-11 70.5 95 46.3
Migut.L00293 Erythranthe guttata HOM05D000428 ORTHO05D005608 9.9e-11 70.5 95 45.3
Os10g0457000 Oryza sativa ssp. japonica HOM05D000428 ORTHO05D005608 9.9e-11 70.5 43 74.4
Sabra05G0102900 Salix brachista HOM05D000428 ORTHO05D005608 9.9e-11 70.5 95 45.3
Zm00001eb046700 Zea mays HOM05D000428 ORTHO05D005608 9.9e-11 70.5 43 74.4
Zm00001eb222330 Zea mays HOM05D000428 ORTHO05D005608 9.9e-11 70.5 43 74.4
AagrBONN_evm.TU.Sc2ySwM_117.1742 Anthoceros agrestis HOM05D000428 ORTHO05D005608 1.3e-10 70.1 95 45.3
AagrBONN_evm.TU.Sc2ySwM_228.3498 Anthoceros agrestis HOM05D000428 ORTHO05D005608 1.3e-10 70.1 95 45.3
FAN10G3598 Fragaria x ananassa HOM05D000428 ORTHO05D005608 1.3e-10 70.1 95 45.3
RcHm_v2.0_Chr2g0096981 Rosa chinensis HOM05D000428 ORTHO05D005608 1.3e-10 70.1 43 72.1
vmacro17854 Vaccinium macrocarpon HOM05D000428 ORTHO05D005608 1.3e-10 70.1 43 72.1
Prupe.2G134600 Prunus persica HOM05D000428 ORTHO05D005608 1.7e-10 69.7 95 45.3
arahy.Tifrunner.gnm1.ann1.57NA14 Arachis hypogaea HOM05D000428 ORTHO05D005608 2.2e-10 69.3 43 72.1
C08p41460 Brassica napus HOM05D000724 ORTHO05D011443 2.9e-10 68.9 43 79.1
BolC8t51707H Brassica oleracea HOM05D000724 ORTHO05D011443 2.9e-10 68.9 43 79.1
Haze_27247 Corylus avellana HOM05D000428 ORTHO05D005608 4.9e-10 68.2 45 68.9
FAN01G0105 Fragaria x ananassa HOM05D000428 ORTHO05D005608 4.9e-10 68.2 95 42.1
FvH4_7g22430 Fragaria vesca HOM05D000428 ORTHO05D005608 6.4e-10 67.8 94 42.6
TAR628G0051 Trochodendron aralioides HOM05D000428 ORTHO05D005608 6.4e-10 67.8 42 69.0
Carub.0003s2855 Capsella rubella HOM05D000428 ORTHO05D005608 8.4e-10 67.4 91 45.1
Cre06.g254800 Chlamydomonas reinhardtii HOM05D000428 ORTHO05D005608 1.9e-09 66.2 95 43.2
SHI22921 Sapria himalayana HOM05D000428 ORTHO05D005608 5.5e-09 64.7 43 69.8
FAN01G1501 Fragaria x ananassa HOM05D000428 ORTHO05D005608 7.1e-09 64.3 42 64.3
BcaC06g36082 Brassica carinata HOM05D000724 ORTHO05D011443 9.3e-09 63.9 43 72.1
C06p18010 Brassica napus HOM05D000724 ORTHO05D011443 9.3e-09 63.9 35 82.9
C07p08050 Brassica napus HOM05D000724 ORTHO05D011443 9.3e-09 63.9 43 72.1
BolC7t41222H Brassica oleracea HOM05D000428 ORTHO05D011443 9.3e-09 63.9 43 72.1
C03p42250 Brassica napus HOM05D000724 ORTHO05D011443 2.7e-08 62.4 38 76.3
Cfa017067 Carpinus fangiana HOM05D000428 ORTHO05D005608 2.7e-08 62.4 92 42.4
MCO05G316 Micromonas commoda HOM05D000428 ORTHO05D005608 2.7e-08 62.4 43 62.8
C09p48790 Brassica napus HOM05D000724 ORTHO05D011443 1.5e-06 56.6 39 66.7
BolC9t57726H Brassica oleracea HOM05D000724 ORTHO05D011443 1.5e-06 56.6 39 66.7


User provided reference genes

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