Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 2.4e-119 432.2 221 100.0
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 1.7e-117 426.0 221 97.7
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 1.7e-117 426.0 221 97.7
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 8.7e-117 423.7 221 97.3
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 3.3e-116 421.8 221 96.8
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 5.6e-116 421.0 221 96.4
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.3e-115 419.9 221 96.4
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 2.8e-115 418.7 221 95.5
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 2.8e-115 418.7 229 94.3
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 3.6e-115 418.3 221 95.9
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 3.6e-115 418.3 221 96.4
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.2e-113 413.3 221 95.5
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 3.4e-113 411.8 221 95.0
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 2.9e-112 408.7 235 90.2
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 2.1e-107 392.5 222 90.1
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 2.8e-107 392.1 222 90.5
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 2.4e-106 389.0 222 90.1
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 5.3e-106 387.9 222 90.5
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 3.2e-95 352.1 221 81.9
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 3.3e-92 342.0 219 78.1
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 2.4e-74 282.7 219 63.9
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 3.6e-70 268.9 219 61.6
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.0e-69 267.3 219 61.2
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 3.9e-69 265.4 219 61.2
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 6.7e-69 264.6 219 63.5
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 2.6e-68 262.7 218 62.8
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 7.4e-68 261.2 220 61.8
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.3e-67 260.4 219 61.2
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.3e-67 260.4 219 61.6
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.7e-67 260.0 219 61.2
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 2.8e-67 259.2 222 61.7
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 8.2e-67 257.7 220 59.5
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 8.2e-67 257.7 214 63.1
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 8.2e-67 257.7 216 62.5
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 1.4e-66 256.9 218 62.8
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 3.1e-66 255.8 223 61.4
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 2.0e-65 253.1 205 63.9
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 5.9e-65 251.5 219 61.6
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 2.2e-64 249.6 219 59.4
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 2.9e-64 249.2 223 60.1
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 2.9e-64 249.2 219 61.2
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.8e-64 248.8 219 58.9
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 1.5e-63 246.9 220 58.2
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.5e-63 246.9 219 58.4
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 1.9e-63 246.5 221 57.9
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.9e-63 246.5 218 60.6
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 3.2e-63 245.7 218 60.6
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 3.2e-63 245.7 248 54.8
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.2e-62 243.8 218 60.6
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.2e-62 243.8 219 57.5
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.2e-62 243.8 219 57.5
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.2e-62 243.8 219 57.5
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-62 243.4 219 57.5
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-62 243.4 219 57.5
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 1.6e-62 243.4 224 60.7
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.7e-62 241.9 219 57.1
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.7e-62 241.9 219 57.1
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.0e-61 240.7 219 57.1
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 1.0e-61 240.7 218 60.6
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.8e-61 240.0 221 57.5
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 3.0e-61 239.2 220 58.6
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 2.6e-60 236.1 219 57.1
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 5.7e-60 235.0 219 58.0
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 7.5e-60 234.6 194 61.3
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 9.7e-60 234.2 220 56.8
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 2.8e-59 232.6 190 65.3
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 1.1e-58 230.7 218 56.4
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.1e-58 230.7 197 60.4
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 1.8e-58 229.9 218 56.4
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 2.4e-58 229.6 222 56.3
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 2.4e-58 229.6 220 54.5
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 3.1e-58 229.2 226 55.3
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 7.0e-58 228.0 217 56.2
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 7.0e-58 228.0 197 60.4
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 9.1e-58 227.6 215 57.2
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 9.1e-58 227.6 226 54.9
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 1.2e-57 227.3 222 54.5
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 1.2e-57 227.3 222 55.0
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.6e-57 226.9 201 60.7
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 2.0e-57 226.5 219 55.7
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.7e-57 226.1 218 56.9
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 2.7e-57 226.1 199 60.8
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.5e-57 225.7 198 61.1
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 3.5e-57 225.7 208 59.6
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 3.5e-57 225.7 218 56.0
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 3.5e-57 225.7 222 55.9
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 3.5e-57 225.7 219 54.3
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 4.5e-57 225.3 222 55.0
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 2.2e-56 223.0 218 54.1
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 2.9e-56 222.6 220 58.2
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 5.0e-56 221.9 214 55.1
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 5.0e-56 221.9 222 54.1
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 6.5e-56 221.5 214 55.1
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 6.5e-56 221.5 193 62.2
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 8.5e-56 221.1 236 54.2
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 3.2e-55 219.2 222 54.1
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 4.2e-55 218.8 189 61.9
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 2.1e-54 216.5 219 57.1
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 4.7e-54 215.3 232 51.3
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 8.0e-54 214.5 199 57.8
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.0e-53 214.2 222 52.3
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 1.4e-53 213.8 255 49.4
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.4e-53 213.8 216 55.1
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 1.4e-53 213.8 181 61.9
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 3.0e-53 212.6 257 49.4
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 5.2e-53 211.8 204 55.4
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.5e-52 210.3 124 88.7
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.5e-52 210.3 200 57.0
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 1.3e-51 207.2 192 59.9
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.1e-50 204.1 180 61.1
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.8e-50 203.4 218 50.5
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 4.1e-50 202.2 230 49.6
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 4.1e-50 202.2 220 50.9
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.1e-50 202.2 164 64.6
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.6e-49 200.3 235 49.8
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 2.2e-48 196.4 205 53.2
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 3.0e-45 186.0 264 43.2
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 5.2e-45 185.3 216 51.9
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 1.5e-44 183.7 196 53.6
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 9.8e-44 181.0 192 54.2
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 2.2e-43 179.9 141 71.6
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 6.3e-43 178.3 195 51.8
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 8.3e-43 177.9 341 36.7
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 7.7e-41 171.4 250 43.2
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.6e-39 165.2 154 57.8
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 1.4e-37 160.6 141 65.2
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 1.8e-37 160.2 145 60.0
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 4.0e-37 159.1 137 65.0
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 5.2e-37 158.7 197 49.7
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.5e-36 157.1 146 57.5
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 8.3e-35 151.4 134 59.0
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 5.4e-34 148.7 171 50.3
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 6.6e-32 141.7 168 51.8
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 6.8e-29 131.7 96 72.9
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.2e-28 131.0 143 52.4
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.6e-28 129.8 95 63.2
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 1.5e-23 114.0 179 39.1
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 6.2e-22 108.6 178 36.0
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 8.1e-22 108.2 180 36.7
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 4.9e-19 99.0 116 49.1
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 8.3e-19 98.2 91 56.0
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 3.2e-18 96.3 136 42.6
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 4.1e-18 95.9 151 43.0
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 3.9e-16 89.4 176 33.5
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 8.1e-14 81.6 60 60.0
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 3.1e-13 79.7 93 48.4
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 2.6e-12 76.6 96 45.8
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 2.9e-11 73.2 50 70.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.7e-09 66.6 59 54.2
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 1.7e-08 63.9 146 34.2
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 1.6e-06 57.4 163 31.9


User provided reference genes

Program Settings