Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-156 556.6 283 100.0
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-141 506.5 289 91.7
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-141 506.5 289 91.7
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-141 506.5 289 91.7
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 5.0e-101 371.7 293 72.0
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 3.8e-93 345.5 284 66.5
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 5.5e-92 341.7 287 67.6
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 5.5e-92 341.7 287 67.6
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 5.5e-92 341.7 287 67.6
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 2.8e-91 339.3 287 67.2
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 3.6e-91 339.0 284 66.5
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 5.2e-90 335.1 287 66.6
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 7.0e-87 324.7 285 64.9
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 9.2e-87 324.3 206 83.5
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 7.8e-86 321.2 284 65.1
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 1.1e-84 317.4 285 63.9
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 3.7e-80 302.4 313 57.8
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 7.3e-76 288.1 269 58.0
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 3.6e-75 285.8 271 57.2
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 1.8e-74 283.5 271 57.9
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 5.2e-74 282.0 271 55.7
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 6.8e-74 281.6 288 56.6
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 1.5e-73 280.4 271 55.7
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 7.5e-73 278.1 272 57.0
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 7.5e-73 278.1 275 56.7
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 1.9e-71 273.5 285 54.7
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 2.4e-71 273.1 281 56.2
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 3.2e-71 272.7 294 54.4
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 5.4e-71 271.9 281 56.2
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 1.6e-70 270.4 294 54.1
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 1.6e-70 270.4 271 57.6
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.5e-70 269.2 270 56.3
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 4.6e-70 268.9 274 55.1
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 4.6e-70 268.9 283 52.7
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 6.0e-70 268.5 273 54.9
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 1.3e-69 267.3 274 56.2
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 1.3e-69 267.3 282 52.1
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 1.7e-69 266.9 275 54.9
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 1.7e-69 266.9 283 54.1
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 2.3e-69 266.5 281 54.1
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 3.0e-69 266.2 283 53.4
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 3.9e-69 265.8 279 54.1
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 3.9e-69 265.8 283 53.7
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 5.0e-69 265.4 281 54.1
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.9e-68 263.5 283 51.9
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 1.9e-68 263.5 284 53.2
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 2.5e-68 263.1 273 56.0
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 2.5e-68 263.1 283 52.3
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 2.5e-68 263.1 283 52.3
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 2.5e-68 263.1 272 55.9
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 4.3e-68 262.3 273 54.2
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 4.3e-68 262.3 272 52.6
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 4.3e-68 262.3 283 53.7
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 4.3e-68 262.3 272 55.5
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 5.6e-68 261.9 283 52.7
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 7.3e-68 261.5 284 53.9
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 1.2e-67 260.8 283 52.7
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 2.1e-67 260.0 286 51.4
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 2.8e-67 259.6 279 52.3
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 3.6e-67 259.2 281 52.3
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 6.2e-67 258.5 284 55.6
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.4e-66 257.3 287 51.9
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 1.4e-66 257.3 277 53.8
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 1.4e-66 257.3 284 51.4
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.4e-66 257.3 272 55.1
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.8e-66 256.9 268 54.9
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.0e-66 255.8 283 51.9
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 4.0e-66 255.8 266 53.8
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 4.0e-66 255.8 283 51.9
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 4.0e-66 255.8 284 52.1
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 4.0e-66 255.8 280 53.6
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 6.8e-66 255.0 268 54.5
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 7.5e-65 251.5 273 52.7
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 1.7e-64 250.4 269 53.9
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 2.9e-64 249.6 271 54.2
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 2.9e-64 249.6 280 51.8
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 3.7e-64 249.2 268 53.7
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 6.4e-64 248.4 269 53.5
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.9e-63 246.9 287 49.5
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.9e-63 246.9 275 52.4
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 3.2e-63 246.1 282 50.4
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 3.2e-63 246.1 269 52.8
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 5.4e-63 245.4 275 52.0
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 5.4e-63 245.4 264 51.5
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 5.4e-63 245.4 282 52.5
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 7.1e-63 245.0 275 52.0
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 7.1e-63 245.0 275 52.0
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.2e-62 244.2 275 51.6
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 3.5e-62 242.7 273 50.9
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 1.7e-61 240.4 275 50.9
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 3.0e-61 239.6 264 52.3
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 3.9e-61 239.2 279 50.2
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 5.1e-61 238.8 281 49.8
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 8.6e-61 238.0 288 49.7
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 2.5e-60 236.5 294 47.6
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 7.3e-60 235.0 282 50.7
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 1.2e-59 234.2 269 50.9
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 3.6e-59 232.6 243 53.9
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.4e-58 229.9 283 48.8
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 6.8e-58 228.4 274 48.9
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 4.4e-57 225.7 282 48.9
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 6.4e-56 221.9 273 49.1
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 1.9e-55 220.3 271 49.8
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 2.4e-55 219.9 294 49.0
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 2.4e-55 219.9 245 51.8
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 9.2e-55 218.0 271 48.0
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 6.0e-54 215.3 385 40.0
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 3.4e-49 199.5 260 46.5
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 4.4e-49 199.1 270 46.7
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 3.8e-48 196.1 280 45.4
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 3.8e-48 196.1 217 51.6
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 3.0e-45 186.4 370 34.9
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 5.1e-45 185.7 172 56.4
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 9.6e-44 181.4 279 44.1
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 9.6e-44 181.4 274 43.1
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 3.6e-43 179.5 180 53.3
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 1.1e-42 177.9 291 41.9
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 6.0e-38 162.2 209 45.5
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 3.0e-37 159.8 268 42.2
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 3.3e-36 156.4 148 55.4
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 2.2e-32 143.7 138 55.1
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 8.4e-32 141.7 278 35.3
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 9.3e-31 138.3 235 40.0
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 2.1e-30 137.1 132 54.5
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 1.8e-29 134.0 149 49.0
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 5.8e-25 119.0 177 44.6
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 8.4e-24 115.2 122 53.3
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 1.1e-23 114.8 139 51.1
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 2.5e-15 87.0 59 72.9
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 1.4e-13 81.3 275 28.7
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 3.4e-09 66.6 57 64.9
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-07 61.6 56 50.0


User provided reference genes

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