Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 1.5e-286 988.8 493 100.0
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 1.5e-286 988.8 493 100.0
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 1.5e-286 988.8 493 100.0
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-208 729.9 523 76.5
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 8.8e-194 680.6 526 71.3
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 8.8e-194 680.6 526 71.3
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 8.8e-194 680.6 526 71.3
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 2.0e-193 679.5 514 71.8
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 6.3e-192 674.5 526 70.9
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 4.1e-191 671.8 526 70.7
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.4e-183 646.7 515 69.9
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 8.8e-178 627.5 525 67.6
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 8.2e-176 620.9 534 65.9
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 2.7e-174 615.9 545 63.7
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 1.1e-172 610.5 529 65.6
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 3.6e-163 578.9 515 64.3
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 1.4e-154 550.4 515 61.2
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 6.6e-149 531.6 498 57.8
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 3.3e-148 529.3 501 58.5
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 3.6e-147 525.8 500 57.2
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 8.0e-147 524.6 501 57.9
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 8.9e-146 521.2 500 56.2
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.2e-145 520.8 515 56.1
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 4.4e-145 518.8 514 56.2
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 7.5e-145 518.1 500 56.2
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 9.8e-145 517.7 515 56.9
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 1.3e-144 517.3 512 56.1
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 1.7e-144 516.9 505 58.4
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.7e-144 516.9 502 58.0
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 3.7e-144 515.8 505 58.0
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 3.7e-144 515.8 504 56.9
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 4.9e-144 515.4 499 58.3
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 8.3e-144 514.6 512 55.7
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.1e-143 514.2 514 55.8
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 3.2e-143 512.7 496 57.7
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 5.4e-143 511.9 495 58.8
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 4.6e-142 508.8 289 91.7
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 4.6e-142 508.8 505 56.8
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 4.6e-142 508.8 498 57.0
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 6.0e-142 508.4 517 55.1
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 7.8e-142 508.1 511 56.6
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 1.0e-141 507.7 513 55.8
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.7e-141 506.9 524 55.7
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 1.7e-141 506.9 515 56.3
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 5.1e-141 505.4 524 55.5
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 5.1e-141 505.4 501 56.3
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 8.6e-141 504.6 500 56.4
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 1.5e-140 503.8 509 55.8
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 3.3e-140 502.7 500 54.6
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 9.5e-140 501.1 516 55.8
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 9.5e-140 501.1 517 55.7
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.2e-139 500.7 502 56.8
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 2.1e-139 500.0 504 57.1
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 2.8e-139 499.6 534 53.9
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 4.7e-139 498.8 506 55.3
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 6.2e-139 498.4 515 55.1
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 1.1e-138 497.7 522 55.2
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.1e-138 497.7 509 54.8
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 4.0e-138 495.7 495 57.2
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 5.2e-138 495.4 502 55.2
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 8.9e-138 494.6 503 55.1
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 1.2e-137 494.2 503 55.3
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.2e-137 494.2 495 57.0
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 2.6e-137 493.0 513 54.0
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 3.4e-137 492.7 513 54.4
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 7.5e-137 491.5 518 54.6
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 9.9e-137 491.1 505 55.2
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 2.2e-136 490.0 516 54.3
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.7e-136 489.2 505 55.0
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 4.9e-136 488.8 514 54.3
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 8.3e-136 488.0 505 55.0
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.9e-135 486.9 505 54.9
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 7.1e-135 485.0 495 55.8
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 1.6e-134 483.8 490 55.9
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 4.6e-134 482.3 512 54.1
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 6.0e-134 481.9 519 54.9
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 7.8e-134 481.5 495 55.6
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.3e-133 480.7 516 53.1
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 8.6e-133 478.0 507 53.5
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 1.1e-132 477.6 500 53.2
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 1.5e-132 477.2 507 55.8
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 4.3e-132 475.7 503 54.5
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 4.3e-132 475.7 495 55.6
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 7.3e-132 474.9 498 54.4
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 9.5e-132 474.6 532 52.3
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 2.8e-131 473.0 509 54.0
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 3.6e-131 472.6 499 53.5
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 3.1e-130 469.5 507 53.6
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 4.0e-130 469.2 510 52.7
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 2.4e-127 459.9 609 47.6
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 2.4e-127 459.9 470 55.5
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.2e-127 459.1 489 54.6
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 4.2e-127 459.1 501 53.7
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 9.2e-127 458.0 511 52.8
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.3e-125 454.1 514 51.8
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 2.3e-125 453.4 530 51.1
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 3.9e-125 452.6 526 52.7
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 1.5e-124 450.7 513 51.9
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 7.3e-124 448.4 506 52.4
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 2.1e-123 446.8 516 50.8
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 6.2e-123 445.3 506 52.4
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 6.2e-123 445.3 472 54.2
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 1.4e-122 444.1 507 52.5
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 3.2e-119 433.0 479 52.2
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 5.4e-119 432.2 501 51.3
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 5.1e-117 425.6 669 41.7
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 4.3e-116 422.5 504 49.6
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 5.3e-114 415.6 507 49.5
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.5e-113 414.1 512 48.8
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 5.8e-113 412.1 395 58.2
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 2.1e-110 403.7 442 52.9
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 6.2e-107 392.1 508 49.0
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 1.4e-98 364.4 508 46.5
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 2.2e-91 340.5 368 54.6
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 7.7e-89 332.0 497 44.5
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 6.1e-86 322.4 226 77.9
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 4.2e-79 299.7 518 41.1
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 5.9e-65 252.7 456 41.2
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.9e-64 250.4 329 47.1
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 8.5e-64 248.8 245 58.0
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 4.0e-53 213.4 293 47.1
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 2.0e-52 211.1 428 37.4
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 3.5e-49 200.3 181 58.0
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 9.5e-47 192.2 216 50.9
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 1.6e-46 191.4 174 61.5
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 3.4e-44 183.7 163 60.7
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 4.4e-44 183.3 156 63.5
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 9.5e-39 165.6 139 68.3
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 4.7e-38 163.3 148 57.4
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 8.3e-35 152.5 109 71.6
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 7.8e-33 146.0 132 58.3
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 3.0e-32 144.1 353 34.0
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 5.0e-32 143.3 147 52.4
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 3.3e-31 140.6 97 73.2
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 9.5e-31 139.0 134 58.2
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 1.1e-29 135.6 123 60.2
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 3.1e-29 134.0 134 53.7
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 2.0e-28 131.3 158 46.2
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 8.3e-27 125.9 534 28.1
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.1e-26 125.6 193 43.0
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 1.0e-24 119.0 68 83.8
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 2.1e-22 111.3 75 73.3
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 1.0e-16 92.4 124 42.7
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 3.3e-15 87.4 58 79.3
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 4.3e-15 87.0 59 72.9
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.1e-10 72.4 45 82.2
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 7.1e-10 69.7 103 39.8
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 4.3e-07 60.5 72 51.4
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 2.8e-06 57.8 58 48.3


User provided reference genes

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