Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-145 520.0 252 100.0
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-31 141.0 114 66.7
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 6.3e-31 138.7 97 73.2
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 6.3e-31 138.7 97 73.2
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 6.3e-31 138.7 97 73.2
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 1.7e-28 130.6 114 62.3
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 1.7e-28 130.6 114 62.3
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 1.7e-28 130.6 114 62.3
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 2.5e-27 126.7 114 61.4
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 5.6e-27 125.6 114 60.5
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 5.6e-27 125.6 113 61.1
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 9.5e-27 124.8 114 60.5
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 9.5e-27 124.8 114 59.6
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.6e-26 124.0 113 59.3
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 4.7e-26 122.5 114 58.8
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 3.1e-25 119.8 115 60.0
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 3.2e-22 109.8 109 57.8
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 1.2e-21 107.8 114 53.5
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 7.8e-21 105.1 153 39.9
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 7.8e-21 105.1 135 44.4
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 3.9e-20 102.8 137 41.6
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 6.6e-20 102.1 148 39.9
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.9e-19 100.5 144 40.3
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 2.5e-19 100.1 139 41.0
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 3.3e-19 99.8 137 40.9
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 4.3e-19 99.4 138 41.3
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 5.6e-19 99.0 136 42.6
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 5.6e-19 99.0 148 39.2
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 7.3e-19 98.6 148 39.2
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 7.3e-19 98.6 148 39.9
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 7.3e-19 98.6 148 37.8
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 9.5e-19 98.2 137 40.1
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 9.5e-19 98.2 137 40.1
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 9.5e-19 98.2 137 41.6
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.2e-18 97.8 117 49.6
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.2e-18 97.8 117 49.6
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.2e-18 97.8 117 49.6
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 2.1e-18 97.1 139 39.6
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 2.1e-18 97.1 148 39.2
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.1e-18 97.1 117 48.7
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 2.1e-18 97.1 150 39.3
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 2.8e-18 96.7 137 40.9
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.8e-18 96.7 179 39.1
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 2.8e-18 96.7 142 39.4
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 2.8e-18 96.7 137 40.1
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 2.8e-18 96.7 137 40.1
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 2.8e-18 96.7 137 40.1
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 3.6e-18 96.3 117 48.7
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.6e-18 96.3 148 39.2
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 4.7e-18 95.9 137 43.1
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 4.7e-18 95.9 148 38.5
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 4.7e-18 95.9 137 40.1
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 4.7e-18 95.9 150 38.7
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 4.7e-18 95.9 137 41.6
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 4.7e-18 95.9 148 38.5
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 6.2e-18 95.5 146 38.4
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 6.2e-18 95.5 114 47.4
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 8.0e-18 95.1 137 40.9
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 8.0e-18 95.1 137 38.7
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.1e-17 94.7 150 38.0
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 1.1e-17 94.7 114 46.5
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.4e-17 94.4 148 37.2
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.4e-17 94.4 150 38.0
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 1.4e-17 94.4 148 38.5
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.8e-17 94.0 134 41.0
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.8e-17 94.0 134 41.0
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 1.8e-17 94.0 137 38.7
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 2.3e-17 93.6 137 40.1
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 2.3e-17 93.6 114 46.5
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 2.3e-17 93.6 134 42.5
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 2.3e-17 93.6 134 42.5
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 3.1e-17 93.2 148 37.8
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 3.1e-17 93.2 148 37.8
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 3.1e-17 93.2 137 39.4
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 3.1e-17 93.2 137 39.4
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 3.1e-17 93.2 134 43.3
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 4.0e-17 92.8 148 35.8
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 5.2e-17 92.4 113 47.8
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 5.2e-17 92.4 137 38.7
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 6.8e-17 92.0 137 40.9
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 6.8e-17 92.0 114 45.6
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 8.9e-17 91.7 116 47.4
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 8.9e-17 91.7 114 46.5
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 8.9e-17 91.7 134 41.0
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.2e-16 91.3 137 40.1
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 1.5e-16 90.9 114 45.6
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.0e-16 90.5 137 40.1
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 2.6e-16 90.1 150 36.0
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.6e-16 90.1 148 37.8
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.6e-16 90.1 114 44.7
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 3.4e-16 89.7 137 38.7
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 3.4e-16 89.7 137 38.7
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 3.4e-16 89.7 138 39.9
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 3.4e-16 89.7 114 46.5
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 4.4e-16 89.4 151 36.4
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 7.5e-16 88.6 137 36.5
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 9.8e-16 88.2 116 44.8
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 9.8e-16 88.2 114 44.7
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 9.8e-16 88.2 138 39.9
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 9.8e-16 88.2 150 35.3
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 1.7e-15 87.4 120 42.5
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.2e-15 87.0 151 35.1
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 2.2e-15 87.0 178 34.3
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 2.9e-15 86.7 137 36.5
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 2.9e-15 86.7 138 38.4
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 3.7e-15 86.3 114 45.6
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 4.9e-15 85.9 148 36.5
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 4.9e-15 85.9 168 35.1
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 8.3e-15 85.1 115 46.1
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 8.3e-15 85.1 134 38.1
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 8.3e-15 85.1 178 34.3
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 2.4e-14 83.6 137 39.4
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 4.6e-13 79.3 112 43.8
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 3.0e-12 76.6 49 75.5
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 5.1e-12 75.9 49 75.5
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 5.1e-12 75.9 128 35.2
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 1.5e-11 74.3 49 73.5
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 1.5e-11 74.3 40 82.5
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 4.3e-11 72.8 40 80.0
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 4.3e-11 72.8 40 80.0
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 5.6e-11 72.4 49 69.4
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.6e-10 70.9 44 70.5
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 2.1e-10 70.5 47 72.3
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 2.1e-10 70.5 40 77.5
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 8.1e-10 68.6 39 79.5
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 3.1e-09 66.6 136 36.0
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 6.8e-09 65.5 41 75.6
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 3.4e-08 63.2 94 45.7


User provided reference genes

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