Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-81 306.6 160 100.0
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 3.3e-41 172.2 139 68.3
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 3.3e-41 172.2 139 68.3
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 3.3e-41 172.2 139 68.3
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 3.1e-39 165.6 156 60.9
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 4.4e-38 161.8 160 56.9
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 7.6e-38 161.0 160 56.9
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 1.7e-37 159.8 156 58.3
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 1.7e-37 159.8 156 58.3
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 1.7e-37 159.8 156 58.3
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 1.7e-37 159.8 156 58.3
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 3.8e-37 158.7 160 55.6
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 8.4e-37 157.5 156 57.7
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 4.2e-36 155.2 160 55.0
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 5.4e-36 154.8 160 54.4
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 1.2e-35 153.7 160 55.0
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 2.1e-35 152.9 160 54.4
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 5.8e-30 134.8 155 50.3
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 7.6e-30 134.4 155 49.7
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 7.6e-30 134.4 156 50.0
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 9.9e-30 134.0 155 49.7
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 2.2e-29 132.9 160 47.5
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 2.9e-29 132.5 156 49.4
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 3.8e-29 132.1 155 50.3
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.8e-29 132.1 151 50.3
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 4.9e-29 131.7 156 48.1
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 4.9e-29 131.7 156 49.4
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 6.4e-29 131.3 155 49.0
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 6.4e-29 131.3 157 47.1
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 8.4e-29 131.0 150 50.7
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 8.4e-29 131.0 150 50.7
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.4e-28 130.2 155 48.4
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.9e-28 129.8 159 47.8
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 1.9e-28 129.8 160 46.2
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.9e-28 129.8 156 48.7
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.9e-28 129.8 156 48.7
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 1.9e-28 129.8 158 47.5
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 1.9e-28 129.8 155 48.4
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 4.2e-28 128.6 157 46.5
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 4.2e-28 128.6 112 60.7
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 4.2e-28 128.6 112 58.9
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 4.2e-28 128.6 113 59.3
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 5.4e-28 128.3 113 58.4
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 5.4e-28 128.3 156 47.4
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 5.4e-28 128.3 156 47.4
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 5.4e-28 128.3 156 47.4
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 5.4e-28 128.3 156 48.1
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 5.4e-28 128.3 156 48.1
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 5.4e-28 128.3 132 51.5
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 5.4e-28 128.3 160 47.5
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 9.3e-28 127.5 156 47.4
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 9.3e-28 127.5 113 59.3
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 9.3e-28 127.5 113 59.3
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 9.3e-28 127.5 113 59.3
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 1.2e-27 127.1 113 58.4
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 1.6e-27 126.7 136 50.0
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 1.6e-27 126.7 156 47.4
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 1.6e-27 126.7 156 47.4
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 1.6e-27 126.7 156 46.2
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 2.1e-27 126.3 155 47.1
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.1e-27 126.3 112 58.0
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 2.1e-27 126.3 149 49.0
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 2.1e-27 126.3 113 58.4
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 2.1e-27 126.3 156 47.4
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 2.7e-27 125.9 160 45.6
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 2.7e-27 125.9 160 45.6
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 2.7e-27 125.9 160 45.6
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 2.7e-27 125.9 160 45.6
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 2.7e-27 125.9 112 58.9
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 2.7e-27 125.9 89 68.5
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 3.5e-27 125.6 158 46.2
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 3.5e-27 125.6 112 58.9
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 3.5e-27 125.6 113 57.5
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 3.5e-27 125.6 160 45.6
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 3.5e-27 125.6 113 59.3
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 3.5e-27 125.6 112 58.0
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 3.5e-27 125.6 155 46.5
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 4.6e-27 125.2 113 58.4
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 4.6e-27 125.2 113 58.4
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 4.6e-27 125.2 113 57.5
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 6.0e-27 124.8 113 57.5
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 6.0e-27 124.8 113 57.5
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 6.0e-27 124.8 113 57.5
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 6.0e-27 124.8 155 46.5
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 6.0e-27 124.8 113 57.5
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 6.0e-27 124.8 113 57.5
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 6.0e-27 124.8 113 57.5
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 6.0e-27 124.8 113 57.5
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 6.0e-27 124.8 113 57.5
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 6.0e-27 124.8 113 57.5
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 6.0e-27 124.8 113 57.5
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 6.0e-27 124.8 112 57.1
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 6.0e-27 124.8 112 57.1
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 7.9e-27 124.4 89 67.4
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 1.0e-26 124.0 112 58.0
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.0e-26 124.0 112 58.0
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.0e-26 124.0 112 58.0
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.0e-26 124.0 112 58.0
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.0e-26 124.0 112 58.0
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 1.0e-26 124.0 112 57.1
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.0e-26 124.0 113 56.6
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 1.3e-26 123.6 112 58.0
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.3e-26 123.6 89 67.4
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.3e-26 123.6 89 67.4
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 1.8e-26 123.2 151 47.7
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.8e-26 123.2 89 66.3
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 1.8e-26 123.2 113 57.5
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 3.0e-26 122.5 112 58.0
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 3.0e-26 122.5 113 57.5
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 3.9e-26 122.1 89 66.3
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 5.1e-26 121.7 112 56.2
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 5.1e-26 121.7 170 44.7
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 8.7e-26 120.9 113 55.8
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 1.1e-25 120.6 113 55.8
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 4.3e-25 118.6 114 56.1
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 5.6e-25 118.2 89 62.9
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 1.6e-24 116.7 156 43.6
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 8.1e-24 114.4 156 42.3
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 3.1e-23 112.5 89 62.9
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 9.0e-23 110.9 89 62.9
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 2.0e-22 109.8 91 61.5
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.6e-22 109.4 139 46.8
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 5.8e-22 108.2 121 47.1
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 2.9e-21 105.9 74 68.9
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 2.7e-19 99.4 72 66.7
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 9.0e-15 84.3 70 60.0
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 7.6e-14 81.3 86 51.2
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.3e-13 80.5 72 61.1
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 1.5e-09 67.0 94 45.7


User provided reference genes

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