Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 1.2e-144 516.5 265 100.0
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 5.1e-124 448.0 269 88.8
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 6.5e-119 431.0 260 86.5
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 9.4e-118 427.2 262 88.2
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 1.2e-117 426.8 262 88.2
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 1.2e-117 426.8 262 88.2
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 1.2e-117 426.8 262 88.2
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 1.8e-116 422.9 262 87.4
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 9.7e-115 417.2 260 85.4
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.8e-113 412.9 259 84.2
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 9.1e-113 410.6 259 85.7
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 1.4e-105 386.7 261 80.8
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 2.7e-104 382.5 292 72.3
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 4.8e-98 361.7 262 75.6
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 2.3e-95 352.8 261 75.5
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 6.1e-93 344.7 254 70.5
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 8.0e-93 344.4 262 70.2
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.8e-92 343.2 260 70.4
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 1.2e-91 340.5 256 70.7
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 2.0e-91 339.7 254 69.7
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 2.6e-91 339.3 261 68.6
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 3.4e-91 339.0 254 69.7
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 3.4e-91 339.0 254 69.7
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 4.4e-91 338.6 254 70.1
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 9.8e-91 337.4 261 70.9
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 9.8e-91 337.4 261 71.3
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 9.8e-91 337.4 260 68.5
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 1.3e-90 337.0 259 68.7
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 1.7e-90 336.7 254 70.1
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 1.7e-90 336.7 262 69.1
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.7e-90 336.7 260 68.5
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 2.2e-90 336.3 259 68.3
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 2.2e-90 336.3 261 69.3
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 2.8e-90 335.9 262 69.8
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 3.7e-90 335.5 261 69.7
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.9e-90 335.1 247 72.1
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 1.4e-89 333.6 259 67.6
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 1.8e-89 333.2 260 68.5
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 7.0e-89 331.3 247 71.7
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 9.2e-89 330.9 263 66.9
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 9.2e-89 330.9 243 72.0
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 9.2e-89 330.9 261 68.2
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 1.2e-88 330.5 261 70.5
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 1.6e-88 330.1 261 67.0
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 1.6e-88 330.1 262 67.2
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 1.6e-88 330.1 260 68.8
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.6e-88 330.1 251 71.7
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.7e-88 329.3 258 67.4
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.5e-88 328.9 249 71.9
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 4.5e-88 328.6 262 68.3
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 5.9e-88 328.2 272 66.9
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 5.9e-88 328.2 263 68.8
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 1.0e-87 327.4 261 66.7
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 1.7e-87 326.6 260 66.9
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 2.3e-87 326.2 261 65.9
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 2.3e-87 326.2 259 68.0
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 3.9e-87 325.5 272 66.5
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 3.9e-87 325.5 260 68.5
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 8.6e-87 324.3 206 83.5
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 1.5e-86 323.6 262 67.6
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.5e-86 323.6 259 67.6
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 1.9e-86 323.2 260 68.5
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.9e-86 323.2 263 68.1
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 4.3e-86 322.0 226 77.9
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 4.3e-86 322.0 226 77.9
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 4.3e-86 322.0 226 77.9
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 2.1e-85 319.7 254 67.7
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.8e-85 319.3 257 68.1
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 3.6e-85 318.9 261 66.7
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 8.0e-85 317.8 254 67.3
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 1.8e-84 316.6 260 67.3
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 4.0e-84 315.5 252 66.3
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 5.2e-84 315.1 260 66.5
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 1.5e-83 313.5 251 65.7
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 7.5e-83 311.2 257 63.8
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 9.8e-83 310.8 259 64.9
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 2.2e-82 309.7 259 64.1
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 3.7e-82 308.9 252 67.1
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 8.3e-82 307.8 254 67.3
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.1e-81 307.4 254 65.0
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 4.1e-81 305.4 238 68.5
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 7.0e-81 304.7 261 64.8
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 1.6e-80 303.5 242 66.9
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 2.0e-80 303.1 262 63.0
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 2.0e-80 303.1 262 63.7
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 2.7e-80 302.8 263 63.5
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 3.5e-80 302.4 261 62.5
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 4.6e-80 302.0 259 61.0
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 2.3e-79 299.7 223 68.6
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.0e-79 299.3 264 61.7
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.0e-79 299.3 263 61.6
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.3e-78 295.8 263 61.6
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.3e-78 295.8 263 61.6
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.3e-78 295.4 263 61.6
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 4.3e-78 295.4 273 58.6
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 9.5e-78 294.3 261 60.5
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 9.5e-78 294.3 252 65.1
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 4.0e-76 288.9 312 55.8
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 5.8e-75 285.0 310 56.1
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 9.8e-75 284.3 239 63.6
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 2.4e-73 279.6 235 64.7
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.1e-72 276.6 243 60.9
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 1.5e-70 270.4 238 61.3
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 4.7e-69 265.4 246 59.3
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 2.6e-67 259.6 413 42.9
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 8.3e-66 254.6 272 58.1
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 2.7e-64 249.6 196 66.3
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 7.8e-64 248.1 199 67.3
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 1.0e-63 247.7 212 60.4
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 1.3e-63 247.3 217 60.8
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 3.9e-63 245.7 243 56.4
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 6.6e-63 245.0 255 54.9
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 6.6e-63 245.0 185 66.5
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 3.4e-59 232.6 252 54.8
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 1.2e-56 224.2 178 65.2
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 3.5e-56 222.6 260 53.1
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 4.6e-56 222.2 239 53.1
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 2.5e-54 216.5 165 69.7
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 3.4e-51 206.1 142 69.7
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 4.9e-50 202.2 272 50.0
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.4e-49 200.7 222 53.6
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 4.8e-45 185.7 186 56.5
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 6.0e-40 168.7 203 50.2
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 8.4e-34 148.3 99 70.7
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 9.6e-30 134.8 113 68.1
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 9.3e-25 118.2 232 37.5
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 8.2e-21 105.1 58 86.2
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.5e-19 100.9 66 74.2
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 2.9e-18 96.7 71 69.0
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 3.2e-17 93.2 60 76.7
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 7.9e-16 88.6 62 62.9
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.4e-15 87.8 66 69.7
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 8.8e-15 85.1 84 56.0
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.5e-14 84.3 72 63.9
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 1.3e-10 71.2 75 57.3
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 2.2e-10 70.5 83 39.8
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.9e-10 70.1 57 64.9
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 2.9e-10 70.1 83 44.6
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 4.2e-09 66.2 188 31.4
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 3.6e-08 63.2 49 67.3
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.0e-06 57.4 72 50.0
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 3.3e-06 56.6 29 75.9
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 5.7e-06 55.8 34 76.5


User provided reference genes

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