Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 4.8e-168 594.3 284 100.0
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 5.5e-124 448.0 289 79.2
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 5.5e-124 448.0 289 79.2
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 2.7e-123 445.7 281 79.7
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 1.0e-122 443.7 286 79.4
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 6.3e-120 434.5 280 79.3
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 3.6e-115 418.7 281 77.6
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 1.8e-114 416.4 282 76.6
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 2.3e-114 416.0 287 75.3
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 9.8e-113 410.6 241 83.0
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 2.4e-95 352.8 211 78.7
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 1.6e-94 350.1 283 65.7
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 1.1e-84 317.4 214 71.5
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 1.6e-83 313.5 212 70.3
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 4.7e-83 312.0 211 69.7
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 1.8e-82 310.1 211 69.7
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 3.1e-82 309.3 211 68.2
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 3.1e-82 309.3 211 69.2
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 3.1e-82 309.3 214 68.7
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 6.8e-82 308.1 205 69.8
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 9.8e-81 304.3 205 70.7
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 9.8e-81 304.3 207 70.5
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 2.2e-80 303.1 201 69.7
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 1.4e-79 300.4 211 67.8
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 1.4e-79 300.4 211 67.3
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 5.4e-79 298.5 207 68.1
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 9.2e-79 297.7 211 67.3
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 1.2e-78 297.4 199 68.8
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 1.2e-78 297.4 201 67.7
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 7.8e-78 294.7 192 69.8
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 7.8e-78 294.7 203 67.0
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 1.3e-77 293.9 213 65.7
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 1.7e-77 293.5 192 70.3
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 6.6e-77 291.6 213 65.3
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 8.6e-77 291.2 220 63.6
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.1e-76 290.8 200 67.5
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 1.1e-76 290.8 200 68.0
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 1.5e-76 290.4 197 68.5
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 5.6e-76 288.5 200 67.0
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 9.5e-76 287.7 211 64.0
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 1.6e-75 287.0 198 67.2
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 2.1e-75 286.6 192 70.8
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 3.6e-75 285.8 198 67.2
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 1.8e-74 283.5 197 66.5
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 2.3e-74 283.1 209 64.1
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 3.1e-74 282.7 211 62.6
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 3.1e-74 282.7 192 68.8
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 1.2e-73 280.8 207 63.8
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 2.0e-73 280.0 211 64.5
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 2.0e-73 280.0 209 62.7
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 2.0e-73 280.0 218 61.5
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 3.4e-73 279.3 185 70.3
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 5.8e-73 278.5 218 60.6
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 7.6e-73 278.1 191 65.4
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 1.4e-71 273.9 191 66.0
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 1.9e-71 273.5 198 66.2
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 7.1e-71 271.6 202 63.9
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 9.2e-71 271.2 191 64.4
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 2.1e-70 270.0 192 66.7
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 2.7e-70 269.6 191 67.0
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 3.5e-70 269.2 220 60.0
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 3.5e-70 269.2 220 60.0
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 6.0e-70 268.5 202 63.9
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 6.0e-70 268.5 215 60.5
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 7.8e-70 268.1 192 65.6
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 1.7e-69 266.9 195 64.1
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 1.7e-69 266.9 161 72.0
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 3.0e-69 266.2 189 64.6
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 3.9e-69 265.8 199 64.8
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 1.1e-68 264.2 202 61.9
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 1.5e-68 263.8 178 68.0
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 1.9e-68 263.5 188 64.4
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 2.5e-68 263.1 176 70.5
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 3.3e-68 262.7 202 61.9
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 3.3e-68 262.7 202 61.4
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 7.3e-68 261.5 190 61.1
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 9.6e-68 261.2 195 63.6
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.2e-67 260.8 147 78.2
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 2.1e-67 260.0 192 65.1
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 2.1e-67 260.0 141 88.7
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 4.7e-67 258.8 192 62.5
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 8.1e-67 258.1 155 71.6
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 1.1e-66 257.7 188 62.8
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 3.1e-66 256.1 202 61.4
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 1.2e-65 254.2 197 64.0
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 1.5e-65 253.8 154 72.1
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 4.4e-65 252.3 189 61.4
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 4.9e-64 248.8 188 62.2
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 5.4e-63 245.4 226 55.8
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 1.2e-62 244.2 192 59.9
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 4.6e-62 242.3 151 66.2
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 1.2e-57 227.6 143 75.5
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 2.6e-57 226.5 147 68.7
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 1.6e-54 217.2 153 75.2
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 4.8e-51 205.7 192 54.2
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 9.9e-49 198.0 142 68.3
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 7.4e-44 181.8 142 61.3
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 2.8e-43 179.9 141 62.4
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 5.3e-42 175.6 169 45.0
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 2.9e-40 169.9 251 37.1
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 1.6e-38 164.1 150 58.0
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 2.7e-38 163.3 96 72.9
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 4.1e-34 149.4 155 47.1
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 5.3e-34 149.1 133 51.1
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 7.2e-31 138.7 96 61.5
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 2.1e-30 137.1 100 69.0
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 1.4e-26 124.4 181 39.8
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 1.5e-17 94.4 85 60.0
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 4.2e-15 86.3 77 50.6
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 2.3e-13 80.5 56 58.9
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 1.4e-10 71.2 52 57.7
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 3.1e-10 70.1 264 27.7
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 3.1e-10 70.1 38 76.3
Psat1g141560 Pisum sativum HOM05D006551 ORTHO05D008546 4.7e-06 56.2 48 56.2
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 6.1e-06 55.8 97 37.1


User provided reference genes

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