Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 1.0e-291 1006.1 548 100.0
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 1.6e-257 892.5 547 89.9
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 1.6e-257 892.5 547 89.9
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 3.1e-256 888.3 547 89.4
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 2.9e-246 855.1 543 89.0
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 2.4e-245 852.0 543 89.1
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 2.0e-239 832.4 607 78.7
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 3.3e-234 815.1 567 81.3
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 5.8e-231 804.3 551 79.1
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 6.5e-222 774.2 550 81.1
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.5e-218 762.3 546 80.4
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 7.7e-215 750.7 550 77.5
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.1e-213 746.9 550 78.5
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 2.5e-205 719.2 580 72.8
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 8.0e-172 607.8 558 67.2
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 5.8e-170 601.7 547 67.5
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 2.1e-159 566.6 550 64.2
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 2.8e-156 556.2 555 61.8
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.6e-151 540.4 547 61.4
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 3.8e-137 492.7 585 53.7
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 7.3e-133 478.4 570 50.2
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 9.6e-133 478.0 574 50.5
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 1.8e-131 473.8 562 52.7
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 2.4e-131 473.4 576 50.5
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 5.3e-131 472.2 588 48.6
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.2e-130 471.1 576 50.7
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 2.6e-130 469.9 467 57.2
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 4.5e-130 469.2 469 58.8
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 2.9e-129 466.5 466 56.7
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 2.9e-129 466.5 466 56.7
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 6.4e-129 465.3 387 70.8
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 2.4e-128 463.4 576 52.4
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 9.3e-128 461.5 608 46.7
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 1.2e-127 461.1 514 52.7
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 1.6e-127 460.7 581 53.2
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 7.9e-127 458.4 466 59.2
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 3.9e-126 456.1 418 61.0
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 6.7e-126 455.3 565 52.9
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 3.3e-125 453.0 597 48.2
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 1.6e-124 450.7 466 59.2
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 1.6e-124 450.7 582 52.1
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 2.1e-124 450.3 568 48.1
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 2.8e-124 449.9 562 52.7
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 6.2e-124 448.7 578 51.9
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 1.4e-123 447.6 487 58.3
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 2.4e-123 446.8 573 47.6
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 3.1e-123 446.4 575 52.3
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 5.3e-123 445.7 556 52.2
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.6e-122 443.4 578 47.1
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 1.3e-121 441.0 569 53.8
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 1.7e-121 440.7 582 50.3
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 2.9e-121 439.9 572 52.4
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 6.5e-121 438.7 566 50.5
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 6.5e-121 438.7 569 52.2
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 3.2e-120 436.4 607 49.9
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 4.2e-120 436.0 395 60.0
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 5.5e-120 435.6 573 50.8
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 1.3e-118 431.0 674 45.5
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 1.8e-118 430.6 302 68.5
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 3.0e-118 429.9 301 69.4
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 5.7e-117 425.6 536 52.1
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 2.1e-116 423.7 386 59.3
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 3.7e-116 422.9 302 67.2
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 4.8e-116 422.5 305 67.2
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 4.8e-116 422.5 302 67.9
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 6.3e-116 422.2 543 46.2
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 1.1e-115 421.4 302 67.5
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 2.4e-115 420.2 401 63.3
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 1.2e-114 417.9 301 65.4
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 1.2e-114 417.9 401 60.8
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 4.5e-114 416.0 403 58.8
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 7.6e-114 415.2 611 48.3
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 1.0e-113 414.8 609 48.4
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 2.2e-113 413.7 303 65.7
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 2.9e-113 413.3 302 66.6
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 6.5e-113 412.1 636 46.1
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 1.1e-112 411.4 304 65.1
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 2.5e-112 410.2 304 65.1
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 9.3e-112 408.3 298 67.8
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 1.2e-111 407.9 303 65.0
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 2.1e-111 407.1 305 65.6
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.1e-111 407.1 631 46.1
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 1.3e-110 404.4 312 63.8
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.8e-110 404.1 545 46.6
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 4.3e-109 399.4 537 49.3
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 3.7e-108 396.4 303 64.0
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 6.3e-108 395.6 305 64.6
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 1.1e-107 394.8 320 60.9
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 5.3e-107 392.5 303 64.4
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 5.9e-106 389.0 302 62.3
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 1.3e-105 387.9 367 54.2
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 3.8e-105 386.3 304 61.5
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.4e-102 377.9 272 65.4
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 3.0e-102 376.7 559 47.0
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 3.7e-100 369.8 401 47.9
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 1.8e-99 367.5 302 62.3
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 6.5e-97 359.0 658 43.9
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 8.5e-97 358.6 302 60.9
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 4.7e-95 352.8 305 58.4
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 6.7e-94 349.0 627 41.5
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 4.8e-92 342.8 440 56.1
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 1.5e-88 331.3 302 54.3
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 6.7e-86 322.4 308 51.9
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 1.3e-84 318.2 301 53.2
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 1.6e-79 301.2 298 53.4
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 5.2e-78 296.2 493 40.8
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 1.5e-77 294.7 357 46.2
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.1e-75 288.5 263 57.4
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 2.4e-75 287.3 252 59.9
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 4.5e-74 283.1 325 46.2
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 5.0e-73 279.6 531 39.7
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 4.5e-66 256.5 325 43.4
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 2.3e-62 244.2 325 38.5
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 3.0e-57 227.3 144 73.6
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 1.4e-54 218.4 180 58.3
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.5e-53 214.9 186 59.7
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.6e-53 214.2 195 57.4
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 3.5e-50 203.8 261 44.4
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 6.8e-46 189.5 123 74.8
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 6.8e-38 162.9 378 30.4
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 4.1e-35 153.7 279 36.9
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 7.8e-26 122.9 93 64.5
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 3.1e-22 110.9 64 82.8
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 5.3e-22 110.2 184 37.0
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 6.9e-22 109.8 69 72.5
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 1.1e-14 85.9 59 71.2
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.8e-14 85.1 62 59.7
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.4e-14 84.7 320 29.7
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 3.2e-11 74.3 38 86.8
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 6.7e-09 66.6 45 68.9
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 2.8e-07 61.2 51 45.1
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.4e-06 58.9 53 52.8


User provided reference genes

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