Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 3.8e-172 608.2 336 100.0
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 2.0e-165 585.9 338 95.3
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 1.9e-163 579.3 344 95.1
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 1.9e-163 579.3 338 92.9
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 1.6e-162 576.2 338 92.3
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 2.7e-162 575.5 338 91.7
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 2.7e-162 575.5 338 94.4
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 6.0e-162 574.3 347 93.9
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 1.0e-161 573.5 338 95.0
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 1.0e-161 573.5 338 95.0
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 9.6e-160 567.0 331 96.4
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.1e-158 563.5 347 92.2
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 3.8e-156 555.1 366 87.7
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 1.6e-151 539.7 338 88.5
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 6.3e-151 537.7 331 91.8
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 2.2e-148 529.3 338 86.4
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 3.8e-148 528.5 338 87.0
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 3.8e-148 528.5 338 87.0
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 5.0e-148 528.1 338 86.1
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 8.5e-148 527.3 338 86.7
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 8.5e-148 527.3 337 85.8
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 8.5e-148 527.3 336 85.4
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 5.5e-147 524.6 338 86.4
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 9.4e-147 523.9 338 85.5
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.2e-146 523.5 336 90.5
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.2e-146 523.5 337 85.5
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.2e-146 523.5 339 86.1
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 2.1e-146 522.7 339 84.7
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 2.1e-146 522.7 338 85.8
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 4.6e-146 521.5 338 81.7
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 6.1e-146 521.2 337 85.8
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 6.1e-146 521.2 340 85.0
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.4e-145 520.0 337 85.2
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 2.3e-145 519.2 338 84.6
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 2.3e-145 519.2 338 84.9
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 3.9e-145 518.5 338 84.6
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 3.9e-145 518.5 337 85.5
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 5.1e-145 518.1 337 85.5
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 6.7e-145 517.7 338 85.2
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 8.8e-145 517.3 337 84.9
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 8.8e-145 517.3 338 84.6
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 2.5e-144 515.8 338 84.0
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 3.3e-144 515.4 338 84.6
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.3e-144 515.4 339 84.1
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 3.3e-144 515.4 336 84.2
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 9.7e-144 513.8 338 84.6
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 1.7e-143 513.1 350 83.4
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 2.8e-143 512.3 342 83.3
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 1.8e-142 509.6 338 84.3
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.8e-142 509.6 338 84.0
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 2.4e-142 509.2 341 83.3
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 3.1e-142 508.8 336 84.2
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 4.1e-142 508.4 340 83.2
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 4.1e-142 508.4 337 83.1
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 5.3e-142 508.1 353 81.6
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 9.1e-142 507.3 338 82.8
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 1.5e-141 506.5 336 84.2
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 4.5e-141 505.0 337 82.8
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 4.5e-141 505.0 337 82.8
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 4.5e-141 505.0 338 84.0
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 5.9e-141 504.6 338 82.8
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 7.7e-141 504.2 338 83.7
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 1.3e-140 503.4 342 82.7
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.3e-140 503.4 341 83.6
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 1.7e-140 503.1 339 82.9
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 2.9e-140 502.3 338 83.4
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 3.8e-140 501.9 338 83.7
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 3.8e-140 501.9 338 83.7
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 5.0e-140 501.5 338 83.7
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 5.0e-140 501.5 338 83.7
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 6.5e-140 501.1 338 82.0
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 6.5e-140 501.1 337 83.4
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 8.5e-140 500.7 338 76.6
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 1.9e-139 499.6 336 84.8
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 5.5e-139 498.0 342 82.2
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 7.2e-139 497.7 373 76.9
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 7.2e-139 497.7 341 83.0
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 9.4e-139 497.3 338 83.1
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 1.6e-138 496.5 356 78.9
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 1.6e-138 496.5 356 78.9
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 3.6e-138 495.4 337 81.0
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.0e-137 493.8 516 62.2
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 1.8e-137 493.0 329 84.8
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 6.7e-137 491.1 366 76.5
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.1e-136 490.3 322 84.2
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.5e-136 490.0 360 78.3
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 1.7e-135 486.5 353 78.5
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 4.8e-135 485.0 338 81.1
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 4.8e-135 485.0 337 82.2
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 6.3e-135 484.6 337 82.5
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 1.1e-134 483.8 336 79.2
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.6e-133 479.2 340 79.7
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 7.7e-133 477.6 338 79.6
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 1.0e-132 477.2 348 78.4
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.3e-132 476.9 341 76.5
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 2.2e-132 476.1 338 80.5
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 6.5e-132 474.6 337 74.8
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 1.9e-131 473.0 322 82.9
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 1.9e-131 473.0 322 83.2
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 1.2e-130 470.3 378 72.0
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 3.6e-130 468.8 326 81.6
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 3.6e-130 468.8 326 81.6
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 4.8e-127 458.4 337 71.2
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.1e-126 455.3 338 77.8
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 5.3e-126 454.9 306 85.9
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.1e-123 447.2 367 72.2
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.1e-123 447.2 367 72.2
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 4.2e-123 445.3 337 75.7
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 1.6e-117 426.8 285 83.2
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 4.2e-115 418.7 353 71.7
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 8.8e-113 411.0 335 74.3
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 3.1e-110 402.5 225 85.8
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 6.8e-105 384.8 275 81.8
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.9e-99 366.7 322 69.9
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.5e-99 364.4 340 67.9
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 1.6e-98 363.6 319 71.8
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 2.7e-93 346.3 255 82.0
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.0e-92 342.8 337 63.8
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 3.3e-91 339.3 281 70.8
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 3.1e-89 332.8 337 63.5
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 3.9e-84 315.8 383 46.5
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 4.0e-81 305.8 147 95.9
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.5e-80 303.9 329 52.0
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 1.2e-64 251.1 183 69.4
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 1.2e-61 241.1 327 45.6
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 1.9e-59 233.8 210 71.4
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 1.1e-57 228.0 165 80.0
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 2.3e-52 210.3 116 85.3
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.3e-43 179.5 82 97.6
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.9e-39 166.8 91 90.1
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.2e-32 144.8 89 86.5
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 3.8e-31 139.8 89 82.0
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 3.2e-22 110.2 55 92.7
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.6e-19 100.5 45 100.0
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 8.2e-18 95.5 203 28.6
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.1e-17 95.1 271 28.4
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.5e-14 84.7 64 64.1
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 6.1e-13 79.3 39 89.7
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.8e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.6e-11 73.9 79 77.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 3.7e-10 70.1 45 73.3
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 6.3e-10 69.3 30 93.3


User provided reference genes

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