Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 6.8e-232 807.0 414 100.0
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 3.6e-225 784.6 414 96.6
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 6.2e-225 783.9 414 96.1
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 6.2e-225 783.9 414 96.1
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 3.1e-224 781.6 414 95.9
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 5.2e-224 780.8 414 96.4
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.2e-223 779.6 414 96.4
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 2.6e-223 778.5 414 95.9
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 3.4e-223 778.1 414 95.9
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.2e-222 775.4 414 95.4
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-220 769.2 426 93.2
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 7.8e-220 766.9 426 93.0
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 7.8e-220 766.9 426 93.0
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 2.5e-218 761.9 414 93.5
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 3.2e-213 745.0 414 92.5
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 8.1e-209 730.3 414 88.6
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 2.6e-207 725.3 414 88.6
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 9.9e-207 723.4 416 90.4
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 2.4e-197 692.2 414 84.3
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 2.1e-196 689.1 414 84.1
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 6.0e-196 687.6 414 83.6
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 7.9e-196 687.2 414 83.1
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.0e-195 686.8 414 82.9
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 7.4e-194 680.6 409 83.6
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.8e-193 678.7 414 81.6
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 3.7e-193 678.3 414 81.4
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.1e-192 676.8 414 82.9
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 2.4e-192 675.6 414 82.9
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 5.3e-192 674.5 414 81.6
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.0e-192 673.7 414 80.9
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.0e-191 672.5 414 80.9
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 3.4e-191 671.8 416 82.0
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 3.4e-191 671.8 410 82.0
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 5.8e-191 671.0 414 81.4
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 7.6e-191 670.6 414 82.1
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 7.6e-191 670.6 414 82.1
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 1.7e-190 669.5 414 81.2
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 2.2e-190 669.1 413 80.6
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.9e-190 668.7 414 80.7
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 6.5e-190 667.5 413 81.4
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 8.4e-190 667.2 414 80.4
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 3.2e-189 665.2 418 84.0
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 7.1e-189 664.1 411 81.5
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 2.7e-188 662.1 414 80.2
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 6.0e-188 661.0 414 80.9
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.3e-187 659.8 413 80.4
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.8e-187 659.4 411 80.3
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 2.3e-187 659.1 409 82.2
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 3.0e-187 658.7 414 80.2
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 5.1e-187 657.9 413 80.1
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 5.1e-187 657.9 414 80.4
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 8.7e-187 657.1 411 80.0
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 8.7e-187 657.1 414 81.2
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 1.5e-186 656.4 414 80.7
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.9e-186 656.0 413 79.9
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 9.6e-186 653.7 445 75.5
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.3e-185 653.3 409 78.5
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 4.8e-185 651.4 414 78.3
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 6.3e-185 651.0 411 80.3
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.4e-184 649.8 411 79.1
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.1e-184 648.7 414 79.2
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 4.1e-184 648.3 414 78.0
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 4.1e-184 648.3 413 79.2
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 9.0e-184 647.1 413 79.9
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.2e-183 646.7 414 79.0
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 5.0e-182 641.3 413 78.7
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 6.5e-182 641.0 414 77.5
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 6.5e-182 641.0 415 78.1
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 8.4e-182 640.6 413 78.2
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.4e-181 639.8 413 79.9
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.4e-181 639.8 413 77.5
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.9e-181 639.4 414 79.0
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.9e-181 639.4 414 78.0
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 4.2e-181 638.3 410 78.0
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 7.2e-181 637.5 414 78.5
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 7.2e-181 637.5 413 77.2
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 3.5e-180 635.2 414 77.5
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 1.1e-178 630.2 416 77.4
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 4.3e-178 628.2 420 76.7
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 7.4e-178 627.5 420 76.2
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 6.3e-177 624.4 415 77.8
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 1.8e-176 622.9 430 74.2
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 6.9e-176 620.9 410 77.1
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.9e-176 620.9 412 76.0
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.0e-174 617.1 439 72.4
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.2e-173 612.1 375 82.1
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.2e-173 612.1 371 83.0
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 4.3e-170 601.7 415 73.7
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 5.7e-170 601.3 415 74.0
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 5.9e-167 591.3 413 69.0
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 7.7e-167 590.9 415 72.3
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 2.9e-166 589.0 414 72.9
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-162 577.0 305 95.1
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 5.7e-162 574.7 410 72.9
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.3e-161 573.5 406 73.9
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 1.4e-160 570.1 414 70.3
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 3.2e-157 558.9 371 76.5
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 4.7e-156 555.1 411 71.3
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.1e-152 543.9 410 65.6
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 3.1e-152 542.3 410 66.1
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 5.5e-149 531.6 323 82.7
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 4.4e-146 521.9 485 61.4
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.8e-144 516.5 412 66.5
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.0e-139 500.7 398 63.1
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 3.4e-138 495.7 405 58.5
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 9.8e-138 494.2 412 59.7
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 3.1e-136 489.2 313 81.8
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.5e-133 477.6 282 84.8
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 3.6e-132 475.7 296 80.1
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.7e-132 475.3 282 84.4
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-122 443.7 284 81.3
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 5.8e-122 441.8 256 85.9
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 3.1e-115 419.5 292 79.1
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 3.5e-111 406.0 256 77.0
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 7.3e-109 398.3 314 65.6
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 4.7e-108 395.6 285 70.5
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 2.0e-98 363.6 343 52.8
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.6e-90 335.1 238 73.5
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 3.4e-82 309.7 191 81.7
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.5e-79 299.7 199 76.9
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 2.3e-78 297.0 205 74.6
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 3.1e-75 286.6 184 76.6
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.6e-69 265.0 204 69.6
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.1e-68 263.8 173 76.9
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 1.0e-62 245.0 402 36.1
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.5e-61 240.4 199 69.3
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.3e-57 228.0 161 76.4
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.7e-57 227.6 403 34.0
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.8e-57 226.5 177 72.3
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 3.2e-56 223.4 220 54.1
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.5e-56 222.6 126 87.3
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.2e-55 221.5 139 79.9
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 6.1e-55 219.2 321 36.1
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.2e-47 194.9 114 86.0
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 2.1e-47 194.1 121 77.7
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.7e-41 174.5 102 82.4
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 7.0e-35 152.5 414 30.0
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 7.7e-34 149.1 83 85.5
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 9.4e-32 142.1 80 85.0
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.4e-27 127.5 107 56.1
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 2.7e-26 124.0 115 60.0
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 5.5e-24 116.3 127 59.8
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 2.1e-23 114.4 143 52.4
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 8.8e-22 109.0 146 51.4
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.3e-20 105.1 72 79.2
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 7.0e-19 99.4 99 56.6
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.5e-16 91.7 153 38.6
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.5e-16 90.9 51 84.3
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.1e-15 86.3 75 62.7
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 4.9e-12 76.6 54 75.9
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.3e-09 67.8 57 61.4
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.9e-08 64.7 38 81.6
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 5.6e-08 63.2 83 44.6
Cfa025229 Carpinus fangiana HOM05D004528 ORTHO05D005815 8.9e-06 55.8 309 23.6
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 8.9e-06 55.8 41 63.4


User provided reference genes

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