Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33352 Brassica carinata HOM05D004425 ORTHO05D005783 2.9e-85 318.5 161 100.0
BcaB03g14063 Brassica carinata HOM05D004425 ORTHO05D005783 3.4e-38 162.2 109 78.0
BcaB02g06626 Brassica carinata HOM05D004425 ORTHO05D005783 1.1e-36 157.1 164 59.8
BcaB05g22179 Brassica carinata HOM05D004425 ORTHO05D005783 5.1e-34 148.3 112 72.3
Carub.0002s1848 Capsella rubella HOM05D004425 ORTHO05D005783 3.4e-30 135.6 182 47.3
BcaB04g19483 Brassica carinata HOM05D004425 ORTHO05D005783 1.0e-29 134.0 77 88.3
AT1G71720 Arabidopsis thaliana HOM05D004425 ORTHO05D005783 1.3e-29 133.7 182 46.7
BcaB08g35329 Brassica carinata HOM05D004425 ORTHO05D005783 5.0e-29 131.7 115 64.3
Thhalv10018428m.g Eutrema salsugineum HOM05D004425 ORTHO05D005783 6.5e-29 131.3 178 44.9
C06p45770 Brassica napus HOM05D004425 ORTHO05D005783 1.1e-28 130.6 169 46.7
BolC6t39629H Brassica oleracea HOM05D004425 ORTHO05D005783 1.1e-28 130.6 169 46.7
A07p37870 Brassica napus HOM05D004425 ORTHO05D005783 1.4e-28 130.2 169 46.2
BraA07t31352Z Brassica rapa HOM05D004425 ORTHO05D005783 1.4e-28 130.2 169 46.2
Sp5g26750 Schrenkiella parvula HOM05D004425 ORTHO05D005783 1.9e-28 129.8 178 45.5
BcaC08g46598 Brassica carinata HOM05D004425 ORTHO05D005783 3.2e-28 129.0 170 48.2
AL2G31290 Arabidopsis lyrata HOM05D004425 ORTHO05D005783 4.2e-28 128.6 178 43.3
Aa31LG4G8910 Aethionema arabicum HOM05D004425 ORTHO05D005783 6.1e-27 124.8 180 43.9
THA.LOC104810492 Tarenaya hassleriana HOM05D004425 ORTHO05D005783 5.3e-23 111.7 179 41.3
GSVIVG01013706001 Vitis vinifera HOM05D004425 ORTHO05D005783 5.0e-21 105.1 179 39.1
Oeu046065.1 Olea europaea HOM05D004425 ORTHO05D005783 8.5e-21 104.4 190 37.9
CSS0010963 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 1.1e-20 104.0 186 37.1
QL02p037179 Quercus lobata HOM05D004425 ORTHO05D005783 1.9e-20 103.2 206 36.4
CSS0011525 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 3.2e-20 102.4 186 36.6
Lalb_Chr06g0161781 Lupinus albus HOM05D004425 ORTHO05D005783 3.2e-20 102.4 187 39.6
Haze_17811 Corylus avellana HOM05D004425 ORTHO05D005783 7.2e-20 101.3 193 36.3
COL.COLO4_13726 Corchorus olitorius HOM05D004425 ORTHO05D005783 1.6e-19 100.1 178 38.2
DCAR_014325 Daucus carota HOM05D004425 ORTHO05D005783 1.6e-19 100.1 186 37.6
Lj5g0021674 Lotus japonicus HOM05D004425 ORTHO05D005783 1.6e-19 100.1 196 35.7
Sopen04g028080 Solanum pennellii HOM05D004425 ORTHO05D005783 1.6e-19 100.1 186 37.1
arahy.Tifrunner.gnm1.ann1.64NVCN Arachis hypogaea HOM05D004425 ORTHO05D005783 2.7e-19 99.4 178 38.8
arahy.Tifrunner.gnm1.ann1.J67SBC Arachis hypogaea HOM05D004425 ORTHO05D005783 2.7e-19 99.4 178 38.8
MSTRG.972 Avicennia marina HOM05D004425 ORTHO05D005783 2.7e-19 99.4 178 38.2
CiPaw.15G011900 Carya illinoinensis HOM05D004425 ORTHO05D005783 2.7e-19 99.4 195 36.9
Glyma.10G220900 Glycine max HOM05D004425 ORTHO05D005783 2.7e-19 99.4 193 36.8
Solyc04g072036.1 Solanum lycopersicum HOM05D004425 ORTHO05D005783 2.7e-19 99.4 186 36.6
BcaB03g16420 Brassica carinata HOM05D004425 ORTHO05D005783 3.6e-19 99.0 123 51.2
Cfa018276 Carpinus fangiana HOM05D004425 ORTHO05D005783 4.7e-19 98.6 189 36.0
Migut.C00150 Erythranthe guttata HOM05D004425 ORTHO05D005783 4.7e-19 98.6 189 37.0
Nn6g32191 Nelumbo nucifera HOM05D004425 ORTHO05D005783 4.7e-19 98.6 168 38.7
TAR628G0201 Trochodendron aralioides HOM05D004425 ORTHO05D005783 4.7e-19 98.6 169 38.5
Ciclev10000894m.g Citrus clementina HOM05D004425 ORTHO05D005783 7.9e-19 97.8 200 36.0
DCAR_001192 Daucus carota HOM05D004425 ORTHO05D005783 7.9e-19 97.8 187 36.4
SalBow7G3651 Salvia bowleyana HOM05D004425 ORTHO05D005783 7.9e-19 97.8 177 37.9
Duzib093G0931 Durio zibethinus HOM05D004425 ORTHO05D005783 1.4e-18 97.1 178 37.1
Hma1.2p1_0678F.1_g202100 Hydrangea macrophylla HOM05D004425 ORTHO05D005783 1.4e-18 97.1 191 37.7
Cpa.g.sc26.112 Carica papaya HOM05D004425 ORTHO05D005783 1.8e-18 96.7 181 38.7
Prupe.8G042900 Prunus persica HOM05D004425 ORTHO05D005783 1.8e-18 96.7 177 39.0
Thecc.08G161900 Theobroma cacao HOM05D004425 ORTHO05D005783 2.3e-18 96.3 190 37.9
VMungo0720G3015 Vigna mungo HOM05D004425 ORTHO05D005783 3.0e-18 95.9 186 36.0
Migut.C00138 Erythranthe guttata HOM05D004425 ORTHO05D005783 3.9e-18 95.5 184 37.0
PGSC0003DMG400025077 Solanum tuberosum HOM05D004425 ORTHO05D005783 3.9e-18 95.5 186 35.5
Atru.chr13.1991 Acer truncatum HOM05D004425 ORTHO05D005783 5.1e-18 95.1 193 36.8
RcHm_v2.0_Chr6g0274001 Rosa chinensis HOM05D004425 ORTHO05D005783 5.1e-18 95.1 187 35.8
MBI01_g29006_MAGBIO Magnolia biondii HOM05D004425 ORTHO05D005783 6.7e-18 94.7 188 37.2
Medtr1g097610 Medicago truncatula HOM05D004425 ORTHO05D005783 6.7e-18 94.7 187 37.4
Gorai.005G076800 Gossypium raimondii HOM05D004425 ORTHO05D005783 8.8e-18 94.4 186 36.6
Gohir.D02G068000 Gossypium hirsutum HOM05D004425 ORTHO05D005783 1.1e-17 94.0 186 36.6
SGA_v2.0_scaffold133G34677 Striga asiatica HOM05D004425 ORTHO05D005783 1.1e-17 94.0 176 36.9
FvH4_2g12900 Fragaria vesca HOM05D004425 ORTHO05D005783 1.5e-17 93.6 186 36.0
FAN24G2283 Fragaria x ananassa HOM05D004425 ORTHO05D005783 1.5e-17 93.6 186 36.0
CDE02G3532 Ceratophyllum demersum HOM05D004425 ORTHO05D005783 2.0e-17 93.2 189 33.9
Cc10_g06490 Coffea canephora HOM05D004425 ORTHO05D005783 2.0e-17 93.2 184 35.9
PGR102G1394 Punica granatum HOM05D004425 ORTHO05D005783 2.0e-17 93.2 170 37.1
Gohir.A02G062300 Gossypium hirsutum HOM05D004425 ORTHO05D005783 2.6e-17 92.8 177 36.2
Aqoxy5G02018 Aquilegia oxysepala HOM05D004425 ORTHO05D005783 3.3e-17 92.4 187 37.4
CAN.G1183.17 Capsicum annuum HOM05D004425 ORTHO05D005783 3.3e-17 92.4 170 38.8
Eucgr.F02682 Eucalyptus grandis HOM05D004425 ORTHO05D005783 3.3e-17 92.4 168 37.5
FAN20G2288 Fragaria x ananassa HOM05D004425 ORTHO05D005783 4.4e-17 92.0 186 34.9
AUR62013449 Chenopodium quinoa HOM05D004425 ORTHO05D005783 5.7e-17 91.7 184 35.9
Oeu061448.2 Olea europaea HOM05D004425 ORTHO05D005783 5.7e-17 91.7 200 35.0
PSO210G1911 Papaver somniferum HOM05D004425 ORTHO05D005783 5.7e-17 91.7 183 36.6
Peaxi162Scf00360g00089 Petunia axillaris HOM05D004425 ORTHO05D005783 5.7e-17 91.7 185 35.7
TPR.G17013 Trifolium pratense HOM05D004425 ORTHO05D005783 5.7e-17 91.7 167 37.7
AUR62007692 Chenopodium quinoa HOM05D004425 ORTHO05D005783 7.4e-17 91.3 178 36.0
AUR62007694 Chenopodium quinoa HOM05D004425 ORTHO05D005783 7.4e-17 91.3 178 36.0
FAN15G1954 Fragaria x ananassa HOM05D004425 ORTHO05D005783 7.4e-17 91.3 186 34.9
Manes.02G184000 Manihot esculenta HOM05D004425 ORTHO05D005783 7.4e-17 91.3 193 35.2
Lsat_1_v5_gn_9_42380 Lactuca sativa HOM05D004425 ORTHO05D005783 9.7e-17 90.9 187 35.8
Sc26g0002880 Simmondsia chinensis HOM05D004425 ORTHO05D005783 9.7e-17 90.9 186 34.9
PSO170G0918 Papaver somniferum HOM05D004425 ORTHO05D005783 1.3e-16 90.5 181 37.0
Rhsim11G0088600 Rhododendron simsii HOM05D004425 ORTHO05D005783 1.3e-16 90.5 188 37.2
TWI60G0965 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 1.3e-16 90.5 189 37.0
EL10Ac1g01372 Beta vulgaris HOM05D004425 ORTHO05D005783 2.8e-16 89.4 169 35.5
Lj2g0007374 Lotus japonicus HOM05D004425 ORTHO05D005783 2.8e-16 89.4 207 31.9
Nitab4.5_0003178g0010 Nicotiana tabacum HOM05D004425 ORTHO05D005783 2.8e-16 89.4 174 36.8
Nitab4.5_0003443g0070 Nicotiana tabacum HOM05D004425 ORTHO05D005783 2.8e-16 89.4 173 35.8
HanXRQChr11g0320171 Helianthus annuus HOM05D004425 ORTHO05D005783 3.7e-16 89.0 166 38.0
C03p88340 Brassica napus HOM05D004425 ORTHO05D005783 4.8e-16 88.6 132 45.5
ClCG08G007280 Citrullus lanatus HOM05D004425 ORTHO05D005783 4.8e-16 88.6 186 35.5
Hund17360 Selenicereus undatus HOM05D004425 ORTHO05D005783 4.8e-16 88.6 216 34.7
FAN27G1841 Fragaria x ananassa HOM05D004425 ORTHO05D005783 6.3e-16 88.2 186 35.5
Sed0020223 Sechium edule HOM05D004425 ORTHO05D005783 6.3e-16 88.2 183 36.6
Sed0006049 Sechium edule HOM05D004425 ORTHO05D005783 8.2e-16 87.8 177 36.7
Glyma.16G161600 Glycine max HOM05D004425 ORTHO05D005783 1.4e-15 87.0 181 37.0
Glyma.20G170600 Glycine max HOM05D004425 ORTHO05D005783 1.4e-15 87.0 115 47.8
Actinidia17768 Actinidia chinensis HOM05D004425 ORTHO05D005783 1.8e-15 86.7 102 50.0
Ah.05g169010 Amaranthus hybridus HOM05D004425 ORTHO05D005783 1.8e-15 86.7 186 32.8
Lalb_Chr01g0009831 Lupinus albus HOM05D004425 ORTHO05D005783 1.8e-15 86.7 185 33.5
C03p12860 Brassica napus HOM05D004425 ORTHO05D005783 2.4e-15 86.3 118 51.7
Ca_04667_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 6.9e-15 84.7 176 36.4
Phvul.007G084200 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 6.9e-15 84.7 115 46.1
Potri.005G197900 Populus trichocarpa HOM05D004425 ORTHO05D005783 6.9e-15 84.7 204 33.3
Phvul.004G089600 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 9.1e-15 84.3 182 35.2
VMungo0464G1137 Vigna mungo HOM05D004425 ORTHO05D005783 9.1e-15 84.3 178 37.6
BcaB01g01306 Brassica carinata HOM05D004425 ORTHO05D005783 1.5e-14 83.6 70 65.7
MELO3C019971.2 Cucumis melo HOM05D004425 ORTHO05D005783 1.5e-14 83.6 193 35.2
Psat6g190160 Pisum sativum HOM05D004425 ORTHO05D005783 1.5e-14 83.6 168 35.1
Sabra05G0150700 Salix brachista HOM05D004425 ORTHO05D005783 2.0e-14 83.2 204 31.9
HPP92_022945 Vanilla planifolia HOM05D004425 ORTHO05D005783 2.0e-14 83.2 168 35.7
CsaV3_6G004950 Cucumis sativus L. HOM05D004425 ORTHO05D005783 2.6e-14 82.8 193 35.2
TWI60G0364 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 7.7e-14 81.3 189 34.4
ATR0006G031 Amborella trichopoda HOM05D004425 ORTHO05D005783 1.0e-13 80.9 192 35.4
BcaB07g33550 Brassica carinata HOM05D001239 ORTHO05D011709 1.0e-13 80.9 55 78.2
Lj7A385T59 Lonicera japonica HOM05D004425 ORTHO05D005783 1.0e-13 80.9 146 37.0
unitig_37.g13122 Utricularia gibba HOM05D004425 ORTHO05D005783 1.0e-13 80.9 183 35.0
arahy.Tifrunner.gnm1.ann1.9T1T9I Arachis hypogaea HOM05D004425 ORTHO05D005783 1.3e-13 80.5 177 33.9
Potri.002G063400 Populus trichocarpa HOM05D004425 ORTHO05D005783 2.2e-13 79.7 167 34.1
Ca_10656_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 3.8e-13 79.0 115 42.6
arahy.Tifrunner.gnm1.ann1.GMAE2R Arachis hypogaea HOM05D004425 ORTHO05D005783 1.1e-12 77.4 181 31.5
MD10G1037300 Malus domestica HOM05D004425 ORTHO05D005783 1.4e-12 77.0 163 36.2
Lalb_Chr19g0130031 Lupinus albus HOM05D004425 ORTHO05D005783 1.2e-11 73.9 115 42.6
Zm00001eb294080 Zea mays HOM05D004425 ORTHO05D005783 8.0e-11 71.2 209 31.1
MD05G1034600 Malus domestica HOM05D004425 ORTHO05D005783 3.0e-10 69.3 188 31.9
Os05g0535800 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 3.0e-10 69.3 170 32.4
BcaC01g01120 Brassica carinata HOM05D004425 ORTHO05D095244 8.8e-10 67.8 45 75.6
BcaC03g15852 Brassica carinata HOM05D004425 ORTHO05D024261 1.5e-09 67.0 132 40.2
SEGI_21205 Sequoiadendron giganteum HOM05D004425 ORTHO05D005783 2.6e-09 66.2 101 41.6
HPP92_022923 Vanilla planifolia HOM05D004425 ORTHO05D005783 5.7e-09 65.1 87 46.0
vmacro01503 Vaccinium macrocarpon HOM05D004425 ORTHO05D005783 2.2e-08 63.2 217 27.6
Zm00001eb160710 Zea mays HOM05D004425 ORTHO05D005783 3.7e-08 62.4 151 35.1
MD10G1036900 Malus domestica HOM05D004425 ORTHO05D005783 8.2e-08 61.2 74 47.3
Os01g0589000 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 9.1e-07 57.8 155 32.3
BraA05t21374Z Brassica rapa HOM05D004425 ORTHO05D024261 7.7e-06 54.7 91 41.8


User provided reference genes

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