Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 9.7e-130 466.8 240 100.0
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 1.4e-120 436.4 240 94.6
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 2.6e-114 415.6 240 92.1
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 1.1e-112 410.2 240 90.4
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 1.1e-112 410.2 240 90.4
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 1.1e-112 410.2 240 90.8
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.8e-112 409.5 239 90.4
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 1.2e-111 406.8 240 90.8
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 5.9e-111 404.4 240 90.0
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 5.0e-110 401.4 229 92.1
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 8.5e-110 400.6 240 90.4
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 1.5e-109 399.8 240 90.4
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 9.8e-106 387.1 242 83.5
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 5.0e-102 374.8 240 83.8
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 8.5e-102 374.0 229 86.0
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 3.6e-100 368.6 240 82.9
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 3.6e-100 368.6 243 82.7
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.0e-99 367.1 242 81.8
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.5e-93 346.7 243 76.1
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.5e-93 346.7 240 77.5
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 5.7e-90 334.7 233 75.1
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 4.9e-89 331.6 232 74.6
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 6.4e-89 331.3 198 84.8
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 9.2e-88 327.4 239 72.4
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 9.2e-88 327.4 240 72.1
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.0e-87 326.2 242 70.2
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 5.9e-87 324.7 244 72.5
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 1.3e-86 323.6 238 71.8
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 1.3e-86 323.6 203 81.8
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 1.3e-86 323.6 188 83.5
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 1.7e-86 323.2 230 73.0
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 1.7e-86 323.2 196 81.6
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 2.3e-86 322.8 239 72.0
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 2.3e-86 322.8 183 88.0
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 3.9e-86 322.0 242 71.1
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 5.0e-86 321.6 241 71.0
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 6.6e-86 321.2 225 73.3
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 1.1e-85 320.5 240 70.8
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 1.1e-85 320.5 184 84.2
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 1.5e-85 320.1 183 84.2
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 1.9e-85 319.7 251 68.9
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.9e-85 319.7 190 84.2
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.9e-85 319.7 190 84.2
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.9e-85 319.7 217 72.4
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 2.5e-85 319.3 225 74.2
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 2.5e-85 319.3 239 71.1
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.5e-85 319.3 180 85.6
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 2.5e-85 319.3 215 75.8
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.3e-85 318.9 238 71.0
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.3e-85 318.9 238 71.4
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.3e-85 318.9 232 72.4
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 3.3e-85 318.9 241 70.5
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 3.3e-85 318.9 239 72.4
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 4.3e-85 318.5 199 80.9
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 4.3e-85 318.5 199 78.9
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 5.6e-85 318.2 239 72.0
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 7.3e-85 317.8 182 86.3
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 7.3e-85 317.8 236 70.8
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 7.3e-85 317.8 197 81.2
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 7.3e-85 317.8 182 85.7
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 1.2e-84 317.0 217 74.7
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 1.6e-84 316.6 247 69.6
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.6e-84 316.6 205 77.6
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.1e-84 316.2 249 70.7
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 2.1e-84 316.2 246 69.5
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 2.8e-84 315.8 204 78.9
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 2.8e-84 315.8 198 81.8
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 2.8e-84 315.8 182 84.6
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 4.7e-84 315.1 192 79.7
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 4.7e-84 315.1 183 82.5
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 4.7e-84 315.1 228 72.8
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 6.2e-84 314.7 181 86.2
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 8.0e-84 314.3 241 69.3
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.0e-83 313.9 196 78.1
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 1.0e-83 313.9 239 70.3
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.4e-83 313.5 196 78.6
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.4e-83 313.5 240 68.3
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 1.8e-83 313.2 245 68.2
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 1.8e-83 313.2 221 72.4
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 2.3e-83 312.8 250 68.0
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 2.3e-83 312.8 191 79.6
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 3.1e-83 312.4 245 69.4
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 4.0e-83 312.0 237 70.0
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 4.0e-83 312.0 240 68.3
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 5.2e-83 311.6 203 76.8
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 6.8e-83 311.2 246 67.5
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 8.9e-83 310.8 182 84.1
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 1.2e-82 310.5 191 77.0
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 2.0e-82 309.7 228 70.6
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 2.6e-82 309.3 175 84.0
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 4.4e-82 308.5 243 69.1
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 8.3e-81 304.3 249 66.7
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 8.3e-81 304.3 243 65.0
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.1e-80 303.9 189 81.0
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.4e-80 303.5 178 83.7
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 1.9e-80 303.1 229 70.3
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 7.0e-80 301.2 231 68.8
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 7.0e-80 301.2 186 79.6
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 9.2e-80 300.8 207 73.9
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 2.7e-79 299.3 229 68.1
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 2.7e-79 299.3 238 66.4
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 4.6e-79 298.5 205 71.7
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 1.3e-78 297.0 192 76.6
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 3.9e-78 295.4 263 60.8
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 3.3e-77 292.4 232 66.4
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 1.2e-76 290.4 176 80.1
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 3.1e-75 285.8 244 62.7
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 3.7e-73 278.9 180 71.1
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 6.4e-73 278.1 234 63.7
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 8.3e-73 277.7 182 77.5
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 2.1e-71 273.1 198 67.7
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 2.3e-70 269.6 278 57.2
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 1.2e-68 263.8 179 67.0
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.1e-67 260.8 152 82.2
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 8.9e-67 257.7 229 64.6
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 1.2e-66 257.3 243 59.3
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.7e-65 253.4 183 69.4
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 1.9e-64 250.0 211 60.2
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 3.9e-62 242.3 240 56.7
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 2.9e-57 226.1 136 80.1
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 9.3e-56 221.1 122 87.7
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 1.3e-49 200.7 142 72.5
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 3.7e-44 182.6 104 88.5
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.7e-44 182.6 147 62.6
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 4.8e-44 182.2 104 87.5
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 4.8e-44 182.2 126 72.2
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 2.0e-42 176.8 112 79.5
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 1.7e-41 173.7 121 70.2
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 1.9e-40 170.2 150 60.7
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 5.5e-40 168.7 83 91.6
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.5e-32 143.3 128 63.3
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 7.1e-32 141.7 124 59.7
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.6e-31 139.0 82 82.9
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 1.0e-30 137.9 78 87.2
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 1.8e-30 137.1 147 42.9
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.9e-29 133.7 75 86.7
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 8.2e-28 128.3 87 75.9
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.1e-23 113.6 77 75.3
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 1.5e-18 97.4 92 62.0
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 1.0e-17 94.7 80 62.5
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.6e-15 86.3 49 83.7
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 1.8e-11 73.9 123 42.3
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 5.9e-10 68.9 47 68.1
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 3.2e-08 63.2 28 92.9
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 3.2e-08 63.2 28 92.9
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.6e-07 59.7 32 81.2


User provided reference genes

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