Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 0.0e+00 1177.5 601 100.0
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 0.0e+00 1098.2 602 94.9
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 0.0e+00 1095.9 602 94.5
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 0.0e+00 1095.9 603 94.5
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 0.0e+00 1095.9 602 94.5
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 0.0e+00 1092.0 602 94.2
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.2e-311 1072.4 603 92.4
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 3.8e-300 1034.2 604 89.7
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 2.2e-292 1008.4 602 87.2
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 2.7e-290 1001.5 601 86.7
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.1e-286 989.6 602 85.2
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 2.4e-286 988.4 601 84.5
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 5.2e-273 944.1 583 85.1
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 4.9e-247 857.8 607 74.6
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 2.0e-224 782.7 611 67.1
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 2.6e-224 782.3 614 69.2
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.7e-221 772.3 574 69.5
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 2.3e-220 769.2 534 73.2
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 2.3e-220 769.2 553 70.5
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 2.3e-220 769.2 586 67.6
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 4.3e-219 765.0 553 70.5
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 7.4e-219 764.2 542 72.1
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 7.4e-219 764.2 542 72.1
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.3e-218 763.5 605 67.4
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 1.3e-218 763.5 524 73.1
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.3e-218 763.5 535 74.2
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.1e-218 762.7 546 71.4
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.1e-218 762.7 599 67.9
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 4.8e-218 761.5 535 73.8
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.4e-217 760.0 605 65.3
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.8e-217 759.6 609 66.0
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 1.8e-217 759.6 509 74.9
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 2.4e-217 759.2 615 65.9
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 9.0e-217 757.3 555 69.7
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 2.0e-216 756.1 533 71.7
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 2.0e-216 756.1 509 73.7
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 3.4e-216 755.4 533 71.1
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.4e-216 755.4 550 70.4
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 9.9e-216 753.8 556 70.0
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 9.9e-216 753.8 533 71.7
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.3e-215 753.4 597 66.8
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.3e-215 753.4 550 70.2
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 2.9e-215 752.3 539 71.8
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 2.9e-215 752.3 529 71.6
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 1.9e-214 749.6 506 73.9
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 2.4e-214 749.2 575 67.0
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 3.2e-214 748.8 507 72.6
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.6e-213 746.5 607 64.7
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.6e-213 746.5 591 67.3
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 1.0e-212 743.8 591 67.0
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.3e-212 743.4 536 69.6
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 2.3e-212 742.7 576 67.0
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 2.3e-212 742.7 600 65.2
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 3.9e-212 741.9 608 64.5
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 5.1e-212 741.5 603 65.2
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 5.1e-212 741.5 580 66.2
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 6.7e-212 741.1 559 69.4
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.9e-211 739.6 510 71.6
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 4.3e-211 738.4 623 65.0
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 7.4e-211 737.6 610 65.9
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 1.3e-210 736.9 516 72.7
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.1e-210 736.1 510 73.1
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 3.7e-210 735.3 544 68.0
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 4.8e-210 734.9 500 73.6
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 6.2e-210 734.6 521 71.6
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 4.0e-209 731.9 611 64.3
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 5.3e-209 731.5 577 67.4
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 6.9e-209 731.1 512 72.3
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.0e-207 727.2 594 65.3
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 2.9e-207 725.7 554 67.1
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 8.4e-207 724.2 565 66.0
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 1.1e-206 723.8 598 62.9
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.5e-206 722.6 611 63.5
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.2e-206 722.2 610 63.8
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 5.5e-206 721.5 600 66.2
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 1.9e-203 713.0 550 67.6
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 4.3e-203 711.8 577 64.0
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 5.7e-203 711.4 559 67.6
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.7e-202 708.8 542 66.8
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 9.0e-201 704.1 592 64.5
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-200 703.7 625 60.8
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 1.2e-197 693.7 547 67.1
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.6e-197 693.3 682 57.0
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 4.6e-197 691.8 615 62.6
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 8.7e-196 687.6 477 70.0
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 8.7e-196 687.6 571 64.4
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.8e-193 679.9 572 62.6
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 6.9e-193 677.9 586 62.6
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 9.4e-190 667.5 461 72.9
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 8.8e-188 661.0 566 63.4
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.5e-187 660.2 565 60.5
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 2.2e-186 656.4 514 66.9
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 3.7e-186 655.6 660 56.2
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 2.5e-182 642.9 527 64.1
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.6e-181 640.2 590 57.5
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 7.9e-181 637.9 459 69.1
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 1.1e-179 634.0 491 62.9
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 3.8e-175 619.0 566 57.8
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 2.5e-174 616.3 549 59.9
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.8e-172 610.1 656 53.7
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 9.1e-161 571.2 463 64.8
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 1.2e-160 570.9 439 65.1
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.3e-159 567.4 372 75.0
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 9.5e-158 561.2 559 55.1
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.7e-157 558.9 440 61.6
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.9e-154 548.9 557 54.6
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 1.5e-131 474.2 530 51.3
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 9.2e-129 464.9 345 68.7
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.2e-128 464.5 443 51.0
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.1e-126 458.0 491 50.1
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 1.1e-126 458.0 450 50.4
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 2.5e-126 456.8 484 49.8
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 1.4e-121 441.0 416 63.7
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 1.6e-120 437.6 425 59.8
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.4e-116 424.5 442 53.4
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.5e-115 421.0 509 49.3
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 4.6e-112 409.5 422 55.0
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.2e-104 384.8 487 44.8
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 4.3e-102 376.3 266 72.6
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.8e-93 347.1 283 60.4
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 8.2e-85 318.9 204 73.5
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 5.5e-73 279.6 173 76.9
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 3.6e-72 276.9 262 51.9
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.0e-71 275.4 263 54.0
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 4.8e-69 266.5 202 62.9
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 2.0e-67 261.2 391 39.4
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 4.5e-67 260.0 193 72.0
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.1e-64 251.1 276 51.1
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.1e-57 228.8 178 63.5
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 7.2e-57 226.1 293 43.7
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.6e-56 224.9 271 48.3
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 5.7e-54 216.5 133 75.9
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.8e-45 186.8 126 70.6
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 2.4e-44 184.5 113 77.9
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.9e-42 177.6 177 55.9
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.5e-41 175.3 272 39.7
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.0e-34 152.5 198 48.0
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 2.1e-32 144.8 269 35.3
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 6.1e-32 143.3 122 59.0
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 1.3e-29 135.6 106 62.3
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.7e-26 125.2 95 67.4
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 9.5e-25 119.4 267 32.6
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.6e-24 118.6 120 50.8
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.8e-24 117.9 112 53.6
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.4e-20 104.8 96 54.2
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 3.2e-20 104.4 77 66.2
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.2e-20 102.8 112 46.4
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 1.7e-18 98.6 56 87.5
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 6.6e-18 96.7 83 53.0
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.1e-17 95.9 232 34.9
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 1.2e-16 92.4 57 80.7
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 8.9e-15 86.3 59 71.2
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 4.4e-14 84.0 69 59.4
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 9.9e-14 82.8 54 74.1
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 6.4e-13 80.1 69 56.5
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 5.4e-12 77.0 246 28.5
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 7.8e-11 73.2 109 40.4
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 1.9e-09 68.6 278 25.2
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.4e-07 61.6 40 75.0
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 2.0e-06 58.5 34 79.4


User provided reference genes

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