Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 0.0e+00 1158.7 593 100.0
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 0.0e+00 1158.7 593 100.0
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 0.0e+00 1154.8 593 99.7
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 0.0e+00 1142.5 594 98.7
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 0.0e+00 1139.0 594 98.5
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 0.0e+00 1094.7 602 94.5
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 8.1e-312 1073.2 598 93.0
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 5.2e-302 1040.4 599 90.5
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 7.1e-291 1003.4 593 88.0
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 3.5e-290 1001.1 594 88.0
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.8e-289 998.8 593 86.3
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 3.6e-287 991.1 594 86.4
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.5e-272 942.6 576 85.2
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 1.4e-251 872.8 598 75.9
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 3.6e-226 788.5 604 70.2
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 5.2e-225 784.6 596 68.5
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 1.7e-223 779.6 598 67.7
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.7e-223 779.6 561 71.1
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.4e-222 776.5 533 73.4
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 3.1e-222 775.4 577 69.2
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 4.5e-221 771.5 599 68.6
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.9e-220 768.8 616 65.4
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 8.6e-220 767.3 556 70.3
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 8.6e-220 767.3 556 70.3
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.1e-219 766.9 592 68.9
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 4.3e-219 765.0 581 68.8
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 4.3e-219 765.0 598 68.6
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 5.6e-219 764.6 610 66.2
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 7.3e-219 764.2 602 68.1
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.2e-218 763.5 597 66.2
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 2.8e-218 762.3 603 66.5
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 2.8e-218 762.3 599 66.9
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 3.6e-218 761.9 594 68.4
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 3.6e-218 761.9 607 67.2
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 8.0e-218 760.8 509 74.1
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.8e-217 759.6 545 71.2
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 4.0e-217 758.4 582 68.6
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 5.2e-217 758.1 596 65.6
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 5.2e-217 758.1 596 66.9
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 2.0e-216 756.1 596 66.4
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.6e-216 755.7 542 70.7
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 3.4e-216 755.4 542 71.8
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 9.8e-216 753.8 544 70.8
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 1.3e-215 753.4 507 73.0
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 4.9e-215 751.5 596 65.9
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 6.4e-215 751.1 597 66.0
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.1e-214 750.4 597 66.2
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.1e-214 750.4 602 66.6
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.4e-214 749.2 622 65.8
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 2.4e-214 749.2 598 67.7
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 4.1e-214 748.4 595 66.1
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 3.5e-213 745.3 572 68.5
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 7.8e-213 744.2 604 65.7
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.0e-212 743.8 510 72.0
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 1.3e-212 743.4 545 69.0
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.7e-212 743.0 580 66.4
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.7e-212 743.0 564 68.8
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.3e-212 742.7 597 65.0
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 5.0e-212 741.5 581 65.7
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 6.6e-212 741.1 570 67.4
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 1.5e-211 740.0 599 66.1
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 2.5e-211 739.2 500 74.0
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.3e-211 738.8 499 74.3
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 7.3e-211 737.6 599 66.3
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 2.1e-210 736.1 603 65.5
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 4.7e-210 734.9 599 64.9
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 4.7e-210 734.9 503 73.4
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.1e-209 733.8 590 65.6
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 1.4e-209 733.4 619 64.6
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.3e-209 732.6 598 66.1
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.2e-209 731.5 607 64.7
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.0e-208 729.6 595 65.0
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 2.0e-208 729.6 568 66.4
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 5.8e-208 728.0 593 64.2
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 2.2e-207 726.1 570 65.6
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 6.0e-205 718.0 509 70.9
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 7.8e-205 717.6 513 69.0
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.5e-203 713.4 546 66.7
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 9.5e-203 710.7 637 60.9
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 3.6e-202 708.8 579 65.8
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.4e-201 706.8 608 63.8
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 8.3e-199 697.6 671 57.5
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 1.4e-198 696.8 610 63.3
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 1.0e-196 690.6 548 66.2
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 1.7e-196 689.9 574 65.2
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 8.6e-196 687.6 511 66.7
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.5e-195 686.8 565 63.2
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 5.6e-195 684.9 567 63.3
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.3e-191 673.7 460 73.9
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 3.2e-190 669.1 575 61.2
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 7.1e-190 667.9 506 67.6
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.3e-188 663.7 583 61.7
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 5.1e-188 661.8 650 58.0
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.0e-184 649.8 600 58.0
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 8.4e-183 644.4 585 61.0
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.7e-181 639.4 459 69.1
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 5.1e-180 635.2 491 62.9
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 1.8e-177 626.7 576 58.0
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 2.4e-174 616.3 560 59.5
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.6e-173 613.6 649 54.4
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 1.5e-163 580.5 480 64.2
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 1.4e-161 573.9 439 65.6
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 6.9e-161 571.6 372 75.3
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 3.8e-159 565.8 559 55.3
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.6e-157 560.5 440 61.6
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.8e-156 557.0 611 52.5
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 2.7e-133 479.9 526 51.9
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 6.3e-130 468.8 345 69.0
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 7.0e-129 465.3 443 51.5
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.6e-128 464.2 491 50.7
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.0e-127 461.5 484 50.6
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 2.1e-125 453.8 450 50.2
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 4.0e-124 449.5 409 64.8
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 4.1e-121 439.5 422 60.2
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.2e-118 429.9 441 53.1
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.6e-117 427.6 509 50.1
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.7e-112 410.2 459 53.4
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 7.0e-105 385.6 487 44.8
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.5e-102 377.9 266 72.6
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.7e-93 346.3 283 60.4
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 1.6e-85 321.2 204 74.5
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 8.4e-74 282.3 173 78.0
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.0e-71 275.4 288 51.7
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 1.1e-70 271.9 262 51.1
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 6.2e-69 266.2 202 62.9
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 1.8e-68 264.6 210 66.2
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 7.6e-67 259.2 391 39.1
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 7.1e-65 252.7 276 50.7
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.9e-58 229.9 281 47.7
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.1e-57 228.8 178 62.9
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 9.3e-57 225.7 293 43.7
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 8.7e-55 219.2 133 77.4
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.8e-45 186.8 126 71.4
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 6.2e-45 186.4 113 77.9
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 5.8e-43 179.9 177 56.5
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 5.5e-41 173.3 272 39.7
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.0e-35 154.8 122 64.8
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 5.5e-33 146.7 269 35.7
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.8e-31 141.7 122 58.2
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 9.7e-30 136.0 106 62.3
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.7e-26 125.2 95 67.4
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 5.5e-25 120.2 120 51.7
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 6.1e-24 116.7 267 32.2
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.0e-23 115.9 105 54.3
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.4e-20 104.8 96 55.2
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 7.0e-20 103.2 77 64.9
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.1e-20 102.8 112 47.3
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 5.9e-19 100.1 83 55.4
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.3e-18 99.0 232 35.3
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 1.7e-18 98.6 56 87.5
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 1.2e-16 92.4 57 80.7
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 1.6e-16 92.0 59 76.3
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 4.4e-14 84.0 69 59.4
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 9.7e-14 82.8 54 74.1
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 6.3e-13 80.1 69 56.5
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.8e-12 78.6 246 28.9
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.7e-10 72.0 109 39.4
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 3.8e-10 70.9 278 25.5
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.0e-07 62.8 40 77.5
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 2.0e-06 58.5 34 79.4


User provided reference genes

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