Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29539 Brassica carinata HOM05D006561 ORTHO05D008097 4.8e-140 501.1 250 100.0
A05p34300 Brassica napus HOM05D006561 ORTHO05D008097 1.4e-139 499.6 250 99.6
C05p52080 Brassica napus HOM05D006561 ORTHO05D008097 4.1e-139 498.0 250 99.6
BolC5t33893H Brassica oleracea HOM05D006561 ORTHO05D008097 1.6e-138 496.1 250 99.2
BraA05t22251Z Brassica rapa HOM05D006561 ORTHO05D008097 1.7e-137 492.7 257 96.9
Sp3g13360 Schrenkiella parvula HOM05D006561 ORTHO05D008097 6.3e-124 447.6 250 88.8
Thhalv10021394m.g Eutrema salsugineum HOM05D006561 ORTHO05D008097 1.0e-121 440.3 250 87.6
AL3G27540 Arabidopsis lyrata HOM05D006561 ORTHO05D008097 6.4e-116 421.0 250 82.4
CARHR090130 Cardamine hirsuta HOM05D006561 ORTHO05D008097 1.0e-113 413.7 250 80.8
AT3G15150 Arabidopsis thaliana HOM05D006561 ORTHO05D008097 3.9e-113 411.8 250 80.0
Carub.0003s1480 Capsella rubella HOM05D006561 ORTHO05D008097 2.5e-112 409.1 250 79.2
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 1.0e-105 387.1 237 77.2
THA.LOC104818093 Tarenaya hassleriana HOM05D006561 ORTHO05D008097 6.6e-97 357.8 251 69.7
TWI38G0530 Tripterygium wilfordii HOM05D006561 ORTHO05D008097 1.3e-84 317.0 249 61.8
Dinv14944 Davidia involucrata HOM05D006561 ORTHO05D008097 3.3e-80 302.4 253 58.5
Haze_09389 Corylus avellana HOM05D006561 ORTHO05D008097 4.3e-80 302.0 248 58.9
Atru.chr2.2390 Acer truncatum HOM05D006561 ORTHO05D008097 5.6e-80 301.6 248 59.3
Cfa020616 Carpinus fangiana HOM05D006561 ORTHO05D008097 5.6e-80 301.6 248 58.5
Manes.03G104900 Manihot esculenta HOM05D006561 ORTHO05D008097 7.3e-80 301.2 248 58.5
Hma1.2p1_0416F.1_g148410 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 1.3e-79 300.4 249 56.6
Rhsim06G0203200 Rhododendron simsii HOM05D006561 ORTHO05D008097 1.3e-79 300.4 248 57.3
CiPaw.11G166900 Carya illinoinensis HOM05D006561 ORTHO05D008097 2.8e-79 299.3 247 57.5
Oeu005397.1 Olea europaea HOM05D006561 ORTHO05D008097 2.4e-78 296.2 249 56.6
Potri.011G141200 Populus trichocarpa HOM05D006561 ORTHO05D008097 7.6e-77 291.2 255 55.3
Gohir.D01G047500 Gossypium hirsutum HOM05D006561 ORTHO05D008097 1.7e-76 290.0 248 56.5
Gorai.002G067000 Gossypium raimondii HOM05D006561 ORTHO05D008097 1.7e-76 290.0 248 56.5
Thecc.07G098700 Theobroma cacao HOM05D006561 ORTHO05D008097 3.8e-76 288.9 267 53.2
Gohir.A01G061000 Gossypium hirsutum HOM05D006561 ORTHO05D008097 6.4e-76 288.1 248 56.5
Ciclev10009269m.g Citrus clementina HOM05D006561 ORTHO05D008097 1.9e-75 286.6 247 56.7
CSS0025681 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 2.4e-75 286.2 252 56.0
CSS0029173 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 2.4e-75 286.2 252 56.0
ClCG11G017750 Citrullus lanatus HOM05D006561 ORTHO05D008097 5.4e-75 285.0 246 56.1
TAR627G0129 Trochodendron aralioides HOM05D006561 ORTHO05D008097 5.4e-75 285.0 253 55.3
Cc05_g11670 Coffea canephora HOM05D006561 ORTHO05D008097 7.1e-75 284.6 248 57.3
Sabra11G0126800 Salix brachista HOM05D006561 ORTHO05D008097 9.3e-75 284.3 255 53.7
Nn1g06395 Nelumbo nucifera HOM05D006561 ORTHO05D008097 3.5e-74 282.3 255 56.5
PSO675G8981 Papaver somniferum HOM05D006561 ORTHO05D008097 6.0e-74 281.6 253 54.2
Eucgr.F01175 Eucalyptus grandis HOM05D006561 ORTHO05D008097 2.3e-73 279.6 247 55.1
Sed0026268 Sechium edule HOM05D006561 ORTHO05D008097 3.0e-73 279.3 245 55.1
PGR083G2053 Punica granatum HOM05D006561 ORTHO05D008097 3.9e-73 278.9 250 54.4
MD03G1235300 Malus domestica HOM05D006561 ORTHO05D008097 5.1e-73 278.5 240 59.2
Nitab4.5_0000246g0010 Nicotiana tabacum HOM05D006561 ORTHO05D008097 1.1e-72 277.3 249 54.2
Nitab4.5_0002019g0020 Nicotiana tabacum HOM05D006561 ORTHO05D008097 1.1e-72 277.3 249 54.2
DCAR_017121 Daucus carota HOM05D006561 ORTHO05D008097 3.3e-72 275.8 248 52.8
Prupe.4G174000 Prunus persica HOM05D006561 ORTHO05D008097 4.3e-72 275.4 221 61.5
PGSC0003DMG401012439 Solanum tuberosum HOM05D006561 ORTHO05D008097 5.6e-72 275.0 248 53.2
AUR62019482 Chenopodium quinoa HOM05D006561 ORTHO05D008097 7.4e-72 274.6 253 53.0
Migut.M00775 Erythranthe guttata HOM05D006561 ORTHO05D008097 9.6e-72 274.2 242 53.7
Hund17607 Selenicereus undatus HOM05D006561 ORTHO05D008097 9.6e-72 274.2 253 53.8
Cpa.g.sc80.2 Carica papaya HOM05D006561 ORTHO05D008097 2.8e-71 272.7 243 56.0
Solyc07g062780.3 Solanum lycopersicum HOM05D006561 ORTHO05D008097 2.8e-71 272.7 249 52.6
Sopen07g031000 Solanum pennellii HOM05D006561 ORTHO05D008097 2.8e-71 272.7 249 53.0
GSVIVG01014276001 Vitis vinifera HOM05D006561 ORTHO05D008097 2.8e-71 272.7 216 58.3
EL10Ac4g08253 Beta vulgaris HOM05D006561 ORTHO05D008097 3.6e-71 272.3 247 52.6
Aqoxy1G02303 Aquilegia oxysepala HOM05D006561 ORTHO05D008097 8.1e-71 271.2 246 52.0
CsaV3_4G033370 Cucumis sativus L. HOM05D006561 ORTHO05D008097 1.1e-70 270.8 246 53.7
MSTRG.15242 Avicennia marina HOM05D006561 ORTHO05D008097 1.4e-70 270.4 247 50.6
ECA234G0004 Erigeron canadensis HOM05D006561 ORTHO05D008097 1.8e-70 270.0 247 51.4
Sc16g0007290 Simmondsia chinensis HOM05D006561 ORTHO05D008097 3.1e-70 269.2 256 52.3
Lsat_1_v5_gn_5_127501 Lactuca sativa HOM05D006561 ORTHO05D008097 6.9e-70 268.1 248 53.2
MELO3C025617.2 Cucumis melo HOM05D006561 ORTHO05D008097 2.0e-69 266.5 254 52.4
vmacro11896 Vaccinium macrocarpon HOM05D006561 ORTHO05D008097 5.8e-69 265.0 318 44.0
AUR62036152 Chenopodium quinoa HOM05D006561 ORTHO05D008097 1.3e-68 263.8 253 51.4
Lalb_Chr25g0286221 Lupinus albus HOM05D006561 ORTHO05D008097 1.7e-68 263.5 252 51.6
VMungo1080G0633 Vigna mungo HOM05D006561 ORTHO05D008097 2.2e-68 263.1 252 53.6
Psat0s1402g0080 Pisum sativum HOM05D006561 ORTHO05D008097 2.9e-68 262.7 247 53.8
HanXRQChr10g0302511 Helianthus annuus HOM05D006561 ORTHO05D008097 2.4e-67 259.6 251 51.4
SHI39306 Sapria himalayana HOM05D006561 ORTHO05D008097 3.2e-67 259.2 248 51.6
SHI39545 Sapria himalayana HOM05D006561 ORTHO05D008097 3.2e-67 259.2 248 51.6
Peaxi162Scf00069g01837 Petunia axillaris HOM05D006561 ORTHO05D008097 5.5e-67 258.5 250 53.2
RcHm_v2.0_Chr5g0032331 Rosa chinensis HOM05D006561 ORTHO05D008097 7.9e-66 254.6 256 53.5
MBI02_g25404_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 1.0e-65 254.2 207 57.0
Phvul.005G029100 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 1.0e-65 254.2 250 52.0
Duzib213G1006 Durio zibethinus HOM05D006561 ORTHO05D008097 2.3e-65 253.1 245 50.6
Lj8A153G39 Lonicera japonica HOM05D006561 ORTHO05D008097 1.5e-64 250.4 204 57.4
Ca_03532_v3 Cicer arietinum L. HOM05D006561 ORTHO05D008097 3.3e-64 249.2 247 51.8
CAN.G162.30 Capsicum annuum HOM05D006561 ORTHO05D008097 4.3e-64 248.8 214 55.6
ATR0602G252 Amborella trichopoda HOM05D006561 ORTHO05D008097 7.4e-64 248.1 253 47.0
arahy.Tifrunner.gnm1.ann1.RM2LTG Arachis hypogaea HOM05D006561 ORTHO05D008097 1.6e-63 246.9 249 51.8
FvH4_3g19260 Fragaria vesca HOM05D006561 ORTHO05D008097 1.6e-63 246.9 254 52.4
Glyma.13G273500 Glycine max HOM05D006561 ORTHO05D008097 2.1e-63 246.5 252 49.6
CANSAT35G0349 Cannabis sativa HOM05D006561 ORTHO05D008097 2.8e-63 246.1 248 49.2
FAN11G0360 Fragaria x ananassa HOM05D006561 ORTHO05D008097 3.7e-63 245.7 251 51.4
Medtr2g078640 Medicago truncatula HOM05D006561 ORTHO05D008097 4.8e-63 245.4 247 50.2
TPR.G7947 Trifolium pratense HOM05D006561 ORTHO05D008097 6.2e-63 245.0 247 49.8
FAN25G3572 Fragaria x ananassa HOM05D006561 ORTHO05D008097 1.8e-62 243.4 254 52.4
Zm00001eb295840 Zea mays HOM05D006561 ORTHO05D008097 3.1e-62 242.7 240 49.2
unitig_747.g21579 Utricularia gibba HOM05D006561 ORTHO05D008097 1.0e-60 237.7 249 48.2
SGA_v2.0_scaffold34G13795 Striga asiatica HOM05D006561 ORTHO05D008097 6.5e-60 235.0 201 54.2
MBI02_g44100_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 1.6e-58 230.3 181 58.0
MD11G1255800 Malus domestica HOM05D006561 ORTHO05D008097 7.9e-58 228.0 187 62.0
Phvul.005G075200 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 2.5e-56 223.0 211 51.2
Lj3g0026269 Lotus japonicus HOM05D006561 ORTHO05D008097 2.8e-55 219.5 202 53.5
HPP92_024567 Vanilla planifolia HOM05D006561 ORTHO05D008097 3.1e-54 216.1 294 40.8
Ah.06g184730 Amaranthus hybridus HOM05D006561 ORTHO05D008097 4.5e-53 212.2 240 48.3
arahy.Tifrunner.gnm1.ann1.YD6KBQ Arachis hypogaea HOM05D006561 ORTHO05D008097 9.7e-48 194.5 248 44.4
PSO541G4753 Papaver somniferum HOM05D006561 ORTHO05D008097 1.1e-46 191.0 182 53.8
Actinidia12544 Actinidia chinensis HOM05D006561 ORTHO05D008097 6.5e-44 181.8 183 51.4
Pp3c22_18560 Physcomitrium patens HOM05D006561 ORTHO05D008097 6.1e-42 175.3 248 35.9
Mapoly0096s0048 Marchantia polymorpha HOM05D006561 ORTHO05D008097 1.1e-38 164.5 246 34.1
AagrBONN_evm.TU.Sc2ySwM_228.4556 Anthoceros agrestis HOM05D006561 ORTHO05D008097 3.1e-38 162.9 197 40.6
Actinidia07498 Actinidia chinensis HOM05D006561 ORTHO05D008097 5.3e-38 162.2 123 59.3
CDE08G0579 Ceratophyllum demersum HOM05D006561 ORTHO05D008097 7.7e-37 158.3 143 53.8
QL08p023698 Quercus lobata HOM05D006561 ORTHO05D008097 5.0e-36 155.6 121 59.5
CBR_g861 Chara braunii HOM05D006561 ORTHO05D008097 1.1e-32 144.4 218 33.0
QL08p023707 Quercus lobata HOM05D006561 ORTHO05D008097 2.2e-31 140.2 156 49.4
Haze_09400 Corylus avellana HOM05D006561 ORTHO05D008097 3.7e-31 139.4 126 55.6
SMO143G0268 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 2.4e-30 136.7 204 37.7
FAN16G3278 Fragaria x ananassa HOM05D006561 ORTHO05D008097 3.1e-30 136.3 128 52.3
Hma1.2p1_0416F.1_g148400 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 2.0e-29 133.7 130 50.8
SMO265G0056 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 2.2e-28 130.2 175 40.0
arahy.Tifrunner.gnm1.ann1.YKS4T6 Arachis hypogaea HOM05D006561 ORTHO05D008097 4.4e-24 115.9 142 45.8
Pp3c23_10880 Physcomitrium patens HOM05D006561 ORTHO05D008097 9.4e-19 98.2 120 41.7
Nn5g27383 Nelumbo nucifera HOM05D006561 ORTHO05D008097 1.2e-18 97.8 98 48.0
Pp3c20_12000 Physcomitrium patens HOM05D006561 ORTHO05D008097 5.7e-16 89.0 120 39.2
Mapoly0066s0041 Marchantia polymorpha HOM05D006561 ORTHO05D008097 4.1e-14 82.8 109 39.4
PRCOL_00000682 Prasinoderma coloniale HOM05D006561 ORTHO05D008097 1.2e-13 81.3 203 28.1
Pp3c23_16570 Physcomitrium patens HOM05D006561 ORTHO05D309072 1.2e-08 64.7 50 50.0
Os05g0563500 Oryza sativa ssp. japonica HOM05D006561 ORTHO05D008097 8.3e-07 58.5 83 38.6
Haze_09394 Corylus avellana HOM05D006561 ORTHO05D165302 7.0e-06 55.5 39 61.5


User provided reference genes

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