Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1813.5 956 100.0
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1757.3 957 97.1
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1756.1 957 97.1
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1751.5 956 97.0
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1749.9 956 96.9
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1749.9 956 96.9
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1695.6 958 94.1
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1681.4 958 93.5
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1655.2 958 91.0
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1651.0 958 90.1
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1645.6 958 90.8
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1643.2 958 90.6
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1639.0 958 91.3
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1627.5 959 90.2
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1540.0 966 84.9
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1434.5 973 78.9
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1266.1 985 69.7
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1258.4 990 67.8
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1251.5 987 68.1
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1250.7 965 68.5
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1249.2 990 67.8
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1246.9 1046 64.8
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1240.7 996 68.1
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1239.9 977 68.1
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1239.9 977 68.1
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1239.2 990 67.0
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1235.3 972 68.6
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1228.0 971 68.3
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1227.6 1037 65.7
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1226.5 988 66.5
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1225.7 999 67.2
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1224.2 966 67.5
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1222.6 1043 65.1
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1221.8 972 68.7
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1220.3 1031 64.8
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1217.2 987 66.2
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1216.8 1044 64.7
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1216.4 1024 65.7
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1216.1 977 66.8
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1213.4 994 67.1
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1211.1 991 66.7
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1209.1 994 66.4
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1209.1 1027 64.3
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1205.3 1037 64.5
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1201.0 963 66.8
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1198.0 1063 62.8
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1195.6 986 65.9
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1188.7 966 67.2
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1187.6 982 66.2
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1187.2 970 66.2
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1187.2 992 64.9
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1186.4 966 66.9
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1186.0 972 67.1
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1185.2 985 65.3
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1184.5 989 65.0
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1183.7 967 66.9
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1183.3 1045 62.7
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1181.8 967 66.3
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1179.1 982 65.7
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1179.1 968 66.8
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1178.7 981 64.5
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1172.5 989 65.7
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1169.8 1003 64.6
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1167.9 1019 63.0
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1166.4 971 65.9
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1158.3 977 65.9
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1155.2 971 63.9
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1153.3 971 63.9
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1142.1 965 65.0
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1141.3 1006 62.4
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1140.6 1002 63.3
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1137.5 1037 61.5
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1135.6 1043 61.9
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1135.2 1167 56.5
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1120.9 984 63.4
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1115.1 993 62.0
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1113.6 908 67.2
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1100.5 977 62.4
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1084.7 958 61.4
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1080.9 820 70.0
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 6.5e-312 1074.3 971 60.5
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.0e-307 1058.5 991 57.7
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 1.4e-301 1039.6 993 59.4
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 3.3e-298 1028.5 993 58.0
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 7.4e-298 1027.3 885 64.2
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 9.7e-298 1026.9 1003 56.8
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 5.3e-296 1021.1 832 66.6
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 4.7e-292 1008.1 849 65.6
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 8.2e-273 944.1 962 58.0
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 5.3e-272 941.4 974 56.2
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.6e-268 929.9 1004 52.3
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 1.0e-262 910.6 1066 48.9
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 1.0e-262 910.6 991 53.5
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 6.8e-259 897.9 1058 49.4
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 1.1e-256 890.6 971 50.5
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 6.2e-228 795.0 762 59.6
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 2.8e-204 716.5 726 56.3
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 1.1e-203 714.5 597 64.3
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 4.8e-196 689.1 602 62.0
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 2.4e-195 686.8 787 53.2
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 9.4e-184 648.3 931 45.0
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 1.7e-180 637.5 549 64.8
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 1.3e-172 611.3 644 54.0
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 6.3e-164 582.4 554 58.8
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 2.0e-157 560.8 962 35.7
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 4.9e-132 476.5 390 65.1
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 1.2e-127 461.8 375 62.9
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 6.0e-122 443.0 290 78.6
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 6.2e-119 433.0 270 79.6
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.3e-118 431.0 304 70.1
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 1.5e-117 428.3 269 80.3
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.7e-116 424.9 276 77.5
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 3.9e-113 413.7 967 31.0
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 8.4e-108 396.0 361 58.4
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.1e-106 391.3 358 59.8
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 8.7e-105 386.0 1280 27.8
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 9.6e-104 382.5 912 30.9
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 3.5e-90 337.4 353 49.6
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.8e-79 301.2 292 54.1
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 2.4e-78 298.1 223 71.3
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 1.7e-76 292.0 168 83.3
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.8e-63 248.1 204 59.3
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.7e-63 247.7 247 54.3
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 4.1e-62 244.2 145 82.1
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 8.5e-60 236.5 206 61.2
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 3.9e-57 227.6 151 76.2
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.8e-55 221.5 144 74.3
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.0e-49 201.4 206 53.4
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 7.5e-48 196.8 129 72.9
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.6e-45 189.1 129 70.5
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 3.5e-45 188.0 239 49.0
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 8.5e-44 183.3 214 52.8
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 2.5e-43 181.8 104 83.7
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.0e-41 176.4 131 67.9
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 2.4e-38 165.2 98 79.6
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 3.1e-38 164.9 161 55.9
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 5.5e-35 154.1 122 66.4
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 6.8e-33 147.1 203 48.8
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.4e-30 137.5 101 65.3
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 3.0e-25 121.7 85 67.1
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 4.4e-24 117.9 165 40.6
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 3.0e-20 105.1 85 58.8
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 6.6e-20 104.0 137 45.3
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 3.2e-14 85.1 42 92.9
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 5.8e-08 64.3 44 72.7
AagrBONN_evm.TU.Sc2ySwM_362.221 Anthoceros agrestis HOM05D001887 ORTHO05D070959 9.2e-06 57.0 59 49.2


User provided reference genes

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