Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 1.2e-191 672.9 332 100.0
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 8.4e-132 474.2 323 78.9
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 6.4e-124 448.0 334 72.8
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 8.4e-124 447.6 335 74.3
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 9.3e-123 444.1 339 72.6
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 2.4e-118 429.5 330 73.9
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 3.1e-118 429.1 339 73.7
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 5.3e-118 428.3 329 74.5
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 4.9e-116 421.8 341 72.1
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 8.4e-116 421.0 329 74.2
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 1.1e-107 394.0 323 69.0
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 1.3e-105 387.1 335 70.1
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 5.1e-105 385.2 302 69.9
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 5.0e-100 368.6 331 65.0
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 5.0e-100 368.6 321 66.4
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 2.7e-98 362.8 286 72.0
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 1.3e-92 344.0 391 57.3
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 1.3e-92 344.0 336 64.0
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 2.7e-90 336.3 288 67.7
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.5e-69 266.2 397 46.6
BraA04t16923Z Brassica rapa HOM05D006887 ORTHO05D004325 3.4e-64 249.6 188 73.4
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 2.4e-62 243.4 366 46.2
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.9e-59 233.8 313 49.2
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 1.0e-57 228.0 367 43.9
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 3.0e-57 226.5 354 45.5
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.2e-56 224.6 378 44.4
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.6e-53 214.2 269 51.7
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 6.0e-53 212.2 381 42.3
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.2e-50 204.5 338 44.4
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.6e-50 203.0 282 48.2
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 7.5e-48 195.3 349 41.5
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.7e-47 194.1 353 43.1
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.9e-46 190.7 321 42.4
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 4.6e-45 186.0 352 41.5
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.3e-43 179.9 333 42.9
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 2.8e-42 176.8 333 39.3
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 2.8e-42 176.8 333 39.3
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 3.6e-42 176.4 340 39.1
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 3.4e-40 169.9 333 38.7
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.7e-39 167.5 246 46.7
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 1.7e-39 167.5 330 38.2
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 1.7e-39 167.5 330 38.2
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 4.6e-37 159.5 337 38.3
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.0e-36 158.3 318 39.3
BcaB06g27436 Brassica carinata HOM05D006887 ORTHO05D004325 4.7e-34 149.4 131 63.4
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 8.1e-34 148.7 85 90.6
Thhalv10028281m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 9.9e-32 141.7 234 44.0
C04p46560 Brassica napus HOM05D006887 ORTHO05D004325 4.2e-30 136.3 132 64.4
BolC4t26242H Brassica oleracea HOM05D006887 ORTHO05D004325 4.2e-30 136.3 132 64.4
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.7e-28 131.0 261 39.1
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 6.6e-28 129.0 274 37.6
CARHR058360 Cardamine hirsuta HOM05D006887 ORTHO05D004325 3.6e-26 123.2 243 41.2
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 1.8e-25 120.9 234 39.7
AT5G37415 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.6e-24 117.1 144 51.4
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 8.4e-23 112.1 136 52.2
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 1.1e-22 111.7 226 35.0
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 1.1e-22 111.7 226 35.0
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 1.1e-22 111.7 226 35.0
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.4e-22 111.3 238 39.1
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 9.3e-22 108.6 149 46.3
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 9.3e-22 108.6 149 46.3
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.2e-21 108.2 133 46.6
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 2.7e-21 107.1 132 48.5
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.5e-21 106.7 142 47.2
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 3.5e-21 106.7 149 46.3
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 4.6e-21 106.3 173 40.5
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 1.3e-20 104.8 270 33.7
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 3.9e-20 103.2 132 47.0
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 6.6e-20 102.4 149 43.0
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 1.8e-17 94.4 267 31.5
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 1.8e-17 94.4 267 31.5
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.8e-17 94.4 176 36.4
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.6e-16 90.5 69 62.3
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.3e-15 88.2 190 36.3
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.7e-15 87.8 176 34.7
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.2e-15 87.4 131 45.0
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 4.9e-15 86.3 279 28.3
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.4e-14 84.7 92 47.8
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 1.9e-14 84.3 112 44.6
CARHR283740 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.9e-14 84.3 174 37.9
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 1.2e-13 81.6 112 43.8
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.6e-13 81.3 149 35.6
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.6e-13 81.3 153 36.6
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.0e-12 78.6 117 46.2
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.3e-12 78.2 87 49.4
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.8e-12 77.8 171 35.1
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 3.0e-12 77.0 133 40.6
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 3.9e-12 76.6 120 43.3
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 5.1e-12 76.3 195 30.3
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 8.7e-12 75.5 134 37.3
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 8.7e-12 75.5 134 37.3
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.5e-11 74.7 62 61.3
BcaB07g33730 Brassica carinata HOM05D007946 ORTHO05D004325 1.5e-11 74.7 274 31.8
BcaB07g33784 Brassica carinata HOM05D007946 ORTHO05D004325 1.5e-11 74.7 274 31.8
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 1.9e-11 74.3 152 38.2
Carub.0007s3592 Capsella rubella HOM05D006887 ORTHO05D004325 4.3e-11 73.2 142 39.4
Sp1g35160 Schrenkiella parvula HOM05D007946 ORTHO05D004325 7.4e-11 72.4 129 36.4
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 7.4e-11 72.4 129 38.0
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 2.8e-10 70.5 62 58.1
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 3.7e-10 70.1 62 58.1
BolC8t50656H Brassica oleracea HOM05D007946 ORTHO05D004325 3.7e-10 70.1 305 27.5
AT5G27090 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 4.8e-10 69.7 71 53.5
AT5G27944 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 4.8e-10 69.7 62 59.7
C08p30340 Brassica napus HOM05D007946 ORTHO05D004325 6.2e-10 69.3 305 27.5
BcaC08g46035 Brassica carinata HOM05D007946 ORTHO05D004325 1.8e-09 67.8 131 39.7
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 1.8e-09 67.8 140 37.1
BraA09t38796Z Brassica rapa HOM05D007946 ORTHO05D004325 2.4e-09 67.4 155 32.9
THA.LOC104801949 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.4e-09 67.4 109 40.4
THA.LOC104801951 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.4e-09 67.4 109 40.4
THA.LOC104825360 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.4e-09 67.4 109 40.4
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 3.1e-09 67.0 93 44.1
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.1e-09 67.0 62 54.8
BcaB01g00130 Brassica carinata HOM05D007946 ORTHO05D004325 3.1e-09 67.0 91 44.0
C08p30320 Brassica napus HOM05D007946 ORTHO05D004325 3.1e-09 67.0 77 50.6
Aa31LG8G6760 Aethionema arabicum HOM05D006887 ORTHO05D004325 4.0e-09 66.6 125 32.0
Aa31LG8G6650 Aethionema arabicum HOM05D006887 ORTHO05D004325 5.3e-09 66.2 143 32.2
AT5G26950 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 6.9e-09 65.9 62 53.2
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 6.9e-09 65.9 213 28.6
C06p38290 Brassica napus HOM05D007946 ORTHO05D004325 6.9e-09 65.9 79 48.1
BolC6t38928H Brassica oleracea HOM05D007946 ORTHO05D004325 6.9e-09 65.9 79 48.1
Aa31LG11G7790 Aethionema arabicum HOM05D006887 ORTHO05D004325 1.5e-08 64.7 105 40.0
CARHR279290 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.0e-08 64.3 261 34.1
ATR0626G033 Amborella trichopoda HOM05D000307 ORTHO05D000166 2.6e-08 63.9 120 33.3
A06p04330 Brassica napus HOM05D007946 ORTHO05D004325 2.6e-08 63.9 154 33.8
A07p32380 Brassica napus HOM05D007946 ORTHO05D004325 2.6e-08 63.9 132 37.1
BraA07t30861Z Brassica rapa HOM05D007946 ORTHO05D004325 2.6e-08 63.9 132 37.1
Aa31LG8G6660 Aethionema arabicum HOM05D006887 ORTHO05D004325 3.4e-08 63.5 120 31.7
BcaC08g43062 Brassica carinata HOM05D007946 ORTHO05D004325 3.4e-08 63.5 182 33.0
A07p06920 Brassica napus HOM05D007946 ORTHO05D004325 3.4e-08 63.5 143 35.7
A09p32540 Brassica napus HOM05D007946 ORTHO05D004325 3.4e-08 63.5 153 34.0
C06p03210 Brassica napus HOM05D007946 ORTHO05D004325 3.4e-08 63.5 182 33.0
BraA07t28483Z Brassica rapa HOM05D007946 ORTHO05D004325 3.4e-08 63.5 143 35.7
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 4.5e-08 63.2 95 37.9
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 5.8e-08 62.8 236 29.7
C06p03120 Brassica napus HOM05D007946 ORTHO05D004325 5.8e-08 62.8 214 29.9
BolC6t35430H Brassica oleracea HOM05D007946 ORTHO05D004325 5.8e-08 62.8 214 29.9
BolC6t35453H Brassica oleracea HOM05D007946 ORTHO05D004325 5.8e-08 62.8 182 33.0
BolC4t26225H Brassica oleracea HOM05D006887 ORTHO05D004325 7.6e-08 62.4 34 76.5
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 9.9e-08 62.0 120 35.0
BcaB07g33736 Brassica carinata HOM05D007946 ORTHO05D004325 9.9e-08 62.0 89 43.8
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 9.9e-08 62.0 103 37.9
BcaNung06274 Brassica carinata HOM05D007946 ORTHO05D004325 1.3e-07 61.6 134 34.3
BraA06t23637Z Brassica rapa HOM05D007946 ORTHO05D004325 1.3e-07 61.6 157 33.1
Gorai.011G177600 Gossypium raimondii HOM05D000307 ORTHO05D000166 1.3e-07 61.6 150 32.7
Actinidia23430 Actinidia chinensis HOM05D006887 ORTHO05D009969 1.7e-07 61.2 59 49.2
Aa31LG3G5290 Aethionema arabicum HOM05D000307 ORTHO05D000166 1.7e-07 61.2 117 35.9
BcaB03g15376 Brassica carinata HOM05D007946 ORTHO05D004325 1.7e-07 61.2 123 36.6
BcaNung06357 Brassica carinata HOM05D007946 ORTHO05D004325 1.7e-07 61.2 124 36.3
BolC6t35593H Brassica oleracea HOM05D007946 ORTHO05D004325 1.7e-07 61.2 124 36.3
PSO541G0906 Papaver somniferum HOM05D000307 ORTHO05D000166 2.2e-07 60.8 130 32.3
Cpa.g.sc365.3 Carica papaya HOM05D006887 ORTHO05D009969 2.9e-07 60.5 149 30.9
BolC6t35452H Brassica oleracea HOM05D007946 ORTHO05D004325 3.8e-07 60.1 132 34.8
Cpa.g.sc192.10 Carica papaya HOM05D006887 ORTHO05D004325 3.8e-07 60.1 132 33.3
Potri.004G222200 Populus trichocarpa HOM05D006887 ORTHO05D009969 3.8e-07 60.1 131 33.6
A08p14850 Brassica napus HOM05D007946 ORTHO05D004325 4.9e-07 59.7 138 34.8
BraA08t33469Z Brassica rapa HOM05D007946 ORTHO05D004325 4.9e-07 59.7 138 34.8
Prupe.3G148900 Prunus persica HOM05D000307 ORTHO05D000166 6.4e-07 59.3 146 32.9
THA.LOC104820442 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.4e-07 59.3 136 32.4
Aqoxy5G00368 Aquilegia oxysepala HOM05D000307 ORTHO05D000166 8.4e-07 58.9 136 31.6
BolC6t35438H Brassica oleracea HOM05D007946 ORTHO05D004325 1.1e-06 58.5 106 37.7
Thhalv10021945m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 1.1e-06 58.5 179 29.1
Gohir.D10G158100 Gossypium hirsutum HOM05D000307 ORTHO05D000166 1.1e-06 58.5 150 32.0
MD02G1297800 Malus domestica HOM05D000307 ORTHO05D000166 1.1e-06 58.5 126 33.3
Sp3g10030 Schrenkiella parvula HOM05D000307 ORTHO05D000166 1.1e-06 58.5 115 35.7
Aqoxy1G01191 Aquilegia oxysepala HOM05D000307 ORTHO05D000166 1.4e-06 58.2 143 34.3
A06p04090 Brassica napus HOM05D007946 ORTHO05D004325 1.9e-06 57.8 169 30.2
Haze_14188 Corylus avellana HOM05D000307 ORTHO05D000166 1.9e-06 57.8 126 33.3
THA.LOC104806918 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.5e-06 57.4 148 32.4
FvH4_6g46801 Fragaria vesca HOM05D006887 ORTHO05D004325 3.2e-06 57.0 54 40.7
Nn3g20912 Nelumbo nucifera HOM05D016285 ORTHO05D000166 3.2e-06 57.0 176 30.1
Sabra01G0168300 Salix brachista HOM05D006887 ORTHO05D004325 4.2e-06 56.6 146 30.8
CAN.G798.34 Capsicum annuum HOM05D009853 ORTHO05D009969 5.5e-06 56.2 53 49.1
Migut.N00831 Erythranthe guttata HOM05D000307 ORTHO05D000166 5.5e-06 56.2 290 24.5
Peaxi162Scf00011g00077 Petunia axillaris HOM05D009853 ORTHO05D009969 5.5e-06 56.2 56 46.4
CSS0019303 Camellia sinensis var. sinensis HOM05D009853 ORTHO05D009969 7.1e-06 55.8 48 52.1
PSO675G0191 Papaver somniferum HOM05D000307 ORTHO05D000166 7.1e-06 55.8 130 29.2
QL10p050899 Quercus lobata HOM05D006887 ORTHO05D009969 7.1e-06 55.8 52 46.2
C06p03600 Brassica napus HOM05D007946 ORTHO05D004325 9.3e-06 55.5 144 31.2
Cfa007171 Carpinus fangiana HOM05D006887 ORTHO05D009969 9.3e-06 55.5 166 27.7
Cfa007888 Carpinus fangiana HOM05D000307 ORTHO05D000166 9.3e-06 55.5 182 28.6
Thhalv10022157m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 9.3e-06 55.5 97 39.2


User provided reference genes

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