Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 1.8e-47 192.2 95 100.0
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 2.0e-46 188.7 95 96.8
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 2.0e-46 188.7 95 96.8
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 1.7e-45 185.7 95 94.7
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 2.2e-45 185.3 93 96.8
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 1.1e-44 183.0 95 93.7
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 2.1e-43 178.7 95 91.6
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 2.7e-43 178.3 95 91.6
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 3.6e-43 177.9 97 91.8
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 4.6e-43 177.6 95 90.5
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 4.6e-43 177.6 95 91.6
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 1.4e-42 176.0 95 91.6
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.4e-42 176.0 95 90.5
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.4e-42 176.0 95 91.6
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 3.9e-42 174.5 95 88.4
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 3.9e-42 174.5 95 88.4
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.1e-41 172.9 95 88.4
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 1.5e-41 172.6 96 90.6
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 2.6e-41 171.8 95 84.2
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 2.6e-41 171.8 95 85.3
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 2.6e-41 171.8 95 86.3
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 3.3e-41 171.4 95 87.4
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 3.3e-41 171.4 95 87.4
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 3.3e-41 171.4 95 85.3
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 3.3e-41 171.4 95 85.3
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 5.7e-41 170.6 95 86.3
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 5.7e-41 170.6 95 85.3
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 5.7e-41 170.6 95 86.3
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 7.4e-41 170.2 95 86.3
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 7.4e-41 170.2 95 86.3
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 7.4e-41 170.2 95 85.3
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 1.3e-40 169.5 95 85.3
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 1.7e-40 169.1 95 86.3
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 1.7e-40 169.1 95 85.3
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 2.2e-40 168.7 84 95.2
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 2.2e-40 168.7 93 87.1
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 2.8e-40 168.3 95 85.3
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 2.8e-40 168.3 95 85.3
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 3.7e-40 167.9 95 85.3
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 3.7e-40 167.9 95 85.3
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 3.7e-40 167.9 95 84.2
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 6.3e-40 167.2 93 86.0
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 6.3e-40 167.2 95 83.2
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 8.2e-40 166.8 97 83.5
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 8.2e-40 166.8 92 84.8
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 1.1e-39 166.4 94 85.1
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 1.1e-39 166.4 95 84.2
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 1.8e-39 165.6 92 85.9
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 2.4e-39 165.2 95 83.2
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 2.4e-39 165.2 101 84.2
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 2.4e-39 165.2 95 83.2
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 3.1e-39 164.9 93 80.6
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 4.1e-39 164.5 95 83.2
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 5.3e-39 164.1 94 80.9
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 5.3e-39 164.1 94 80.9
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 6.9e-39 163.7 93 89.2
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 6.9e-39 163.7 93 89.2
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 6.9e-39 163.7 95 84.2
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.5e-38 162.5 103 79.6
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 2.0e-38 162.2 94 80.9
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 2.0e-38 162.2 95 82.1
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 2.0e-38 162.2 92 81.5
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.4e-38 161.4 94 80.9
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 4.5e-38 161.0 96 82.3
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 2.2e-37 158.7 94 78.7
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 2.9e-37 158.3 84 90.5
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 3.8e-37 157.9 95 78.9
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 5.0e-37 157.5 94 81.9
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 5.0e-37 157.5 86 86.0
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 5.0e-37 157.5 86 86.0
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 6.5e-37 157.1 89 84.3
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 8.5e-37 156.8 86 86.0
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 8.5e-37 156.8 95 77.9
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 1.1e-36 156.4 84 90.5
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 1.1e-36 156.4 84 90.5
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 1.1e-36 156.4 84 90.5
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 1.4e-36 156.0 93 79.6
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.9e-36 155.6 89 83.1
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 2.5e-36 155.2 89 83.1
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 5.5e-36 154.1 83 86.7
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 7.2e-36 153.7 89 82.0
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 7.2e-36 153.7 89 82.0
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 1.2e-35 152.9 93 77.4
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 1.6e-35 152.5 94 76.6
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.0e-34 149.8 94 75.5
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.0e-34 149.8 94 75.5
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.0e-34 149.8 95 71.6
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 2.3e-34 148.7 94 74.5
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 3.0e-34 148.3 86 81.4
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 1.1e-33 146.4 89 77.5
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.1e-33 146.4 94 77.7
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 1.5e-33 146.0 96 72.9
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.6e-33 145.2 120 62.5
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 1.7e-32 142.5 86 79.1
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 1.7e-32 142.5 86 74.4
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 8.2e-32 140.2 85 77.6
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 1.1e-31 139.8 94 71.3
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.2e-30 136.3 75 90.7
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 7.7e-30 133.7 78 82.1
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.0e-29 133.3 95 74.7
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 3.8e-29 131.3 75 86.7
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 5.0e-29 131.0 75 86.7
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 8.5e-29 130.2 75 81.3
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 1.5e-28 129.4 81 74.1
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 7.2e-28 127.1 75 82.7
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 1.2e-27 126.3 75 82.7
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 2.1e-27 125.6 83 74.7
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 2.7e-27 125.2 77 80.5
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 1.4e-26 122.9 64 89.1
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 1.3e-24 116.3 69 82.6
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 1.7e-24 115.9 69 76.8
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 6.3e-24 114.0 75 72.0
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 4.1e-23 111.3 89 65.2
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 4.1e-23 111.3 89 65.2
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 5.3e-23 110.9 73 71.2
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 9.1e-23 110.2 97 59.8
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 2.7e-22 108.6 71 70.4
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 2.9e-21 105.1 75 68.0
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 1.9e-20 102.4 83 54.2
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 2.5e-20 102.1 92 57.6
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 4.7e-19 97.8 56 85.7
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 3.4e-17 91.7 85 48.2
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 2.8e-16 88.6 54 79.6
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 6.3e-16 87.4 42 92.9
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 8.3e-16 87.0 85 50.6
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 5.4e-15 84.3 58 69.0
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 6.5e-13 77.4 79 59.5
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 2.8e-11 72.0 43 79.1
Aa31LG10G1230 Aethionema arabicum HOM05D006077 ORTHO05D007499 9.8e-09 63.5 96 43.8
Aa31sc1971G10 Aethionema arabicum HOM05D006077 ORTHO05D007499 4.9e-08 61.2 96 42.7


User provided reference genes

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