Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 6.5e-165 583.9 289 100.0
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 1.4e-154 549.7 289 95.2
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 3.0e-154 548.5 289 94.8
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 4.0e-154 548.1 289 94.5
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 1.1e-151 540.0 294 92.9
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 3.2e-151 538.5 297 92.3
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 4.1e-151 538.1 294 92.2
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 1.2e-150 536.6 293 92.5
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 4.6e-150 534.6 293 92.2
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 4.6e-150 534.6 293 92.8
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 5.0e-149 531.2 293 91.8
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 1.9e-148 529.3 293 92.2
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.2e-147 526.6 293 91.5
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 1.6e-147 526.2 298 90.3
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 3.6e-147 525.0 293 91.8
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 6.2e-147 524.2 293 91.5
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 1.9e-143 512.7 270 95.2
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 2.7e-142 508.8 291 89.3
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 1.1e-140 503.4 274 93.4
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 5.6e-140 501.1 288 88.2
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 1.2e-139 500.0 293 85.7
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 2.1e-139 499.2 293 85.0
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 2.8e-139 498.8 291 87.6
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 3.6e-139 498.4 293 85.7
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 3.6e-139 498.4 293 85.7
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 1.4e-138 496.5 293 84.0
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 1.8e-138 496.1 293 84.6
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.8e-138 496.1 288 86.5
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.3e-138 495.7 293 85.3
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 3.1e-138 495.4 293 84.3
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 4.0e-138 495.0 293 84.3
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 5.2e-138 494.6 293 84.3
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 5.2e-138 494.6 289 85.8
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 6.8e-138 494.2 293 84.3
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 8.9e-138 493.8 291 85.6
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 8.9e-138 493.8 291 86.3
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 8.9e-138 493.8 292 83.9
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 2.0e-137 492.7 293 84.6
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 2.0e-137 492.7 293 84.3
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 2.6e-137 492.3 292 83.2
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 2.6e-137 492.3 293 84.3
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 3.4e-137 491.9 293 83.6
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 7.5e-137 490.7 293 84.0
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 7.5e-137 490.7 293 84.0
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 7.5e-137 490.7 287 84.0
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 7.5e-137 490.7 293 83.6
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 9.9e-137 490.3 293 83.3
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 9.9e-137 490.3 287 84.7
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 1.3e-136 490.0 293 84.6
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 1.3e-136 490.0 287 85.0
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 1.3e-136 490.0 290 84.1
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 1.7e-136 489.6 292 83.2
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 2.2e-136 489.2 293 84.0
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 2.9e-136 488.8 288 85.8
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 2.9e-136 488.8 293 82.6
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 4.9e-136 488.0 289 85.5
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 6.4e-136 487.6 286 84.3
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 6.4e-136 487.6 293 84.0
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 6.4e-136 487.6 293 82.3
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 8.3e-136 487.3 293 83.3
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 8.3e-136 487.3 286 87.4
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 8.3e-136 487.3 292 82.9
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 1.4e-135 486.5 290 83.4
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 1.4e-135 486.5 287 83.3
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 1.9e-135 486.1 292 82.5
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 3.2e-135 485.3 287 84.7
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 4.1e-135 485.0 293 82.3
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 4.1e-135 485.0 290 83.1
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 5.4e-135 484.6 293 81.6
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 7.1e-135 484.2 290 83.8
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 7.1e-135 484.2 293 82.6
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 7.1e-135 484.2 290 83.1
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 9.2e-135 483.8 314 78.3
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 1.2e-134 483.4 300 80.7
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.6e-134 483.0 293 82.6
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 1.6e-134 483.0 293 81.2
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 1.6e-134 483.0 290 83.8
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 1.6e-134 483.0 293 82.3
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 2.1e-134 482.6 290 83.1
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 2.1e-134 482.6 290 83.4
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 2.7e-134 482.3 270 90.4
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 3.5e-134 481.9 292 82.5
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 4.6e-134 481.5 293 82.3
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 7.8e-134 480.7 293 81.9
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 7.8e-134 480.7 293 81.9
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 1.0e-133 480.3 290 83.1
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 2.3e-133 479.2 293 81.9
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 2.3e-133 479.2 293 81.6
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 3.0e-133 478.8 293 81.9
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 3.0e-133 478.8 293 81.9
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 3.9e-133 478.4 290 82.8
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 3.9e-133 478.4 293 82.6
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.1e-132 476.9 322 76.1
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 1.5e-132 476.5 290 81.0
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 5.6e-132 474.6 298 80.5
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 9.5e-132 473.8 293 80.9
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 4.0e-130 468.4 275 86.5
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 5.2e-130 468.0 277 84.1
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 8.9e-130 467.2 290 79.3
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 8.9e-130 467.2 290 79.3
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 8.9e-130 467.2 293 80.9
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 5.8e-129 464.5 274 85.8
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 9.9e-129 463.8 276 84.8
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 3.8e-128 461.8 274 82.8
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 4.9e-128 461.5 274 84.7
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 8.4e-128 460.7 274 85.4
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 8.4e-128 460.7 287 80.1
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 1.1e-127 460.3 290 79.7
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 4.2e-127 458.4 274 84.3
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 5.4e-127 458.0 268 84.7
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 1.6e-126 456.4 280 82.1
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.7e-126 455.7 366 66.9
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 1.3e-125 453.4 273 83.9
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.7e-125 453.0 292 80.1
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 1.7e-125 453.0 315 74.0
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 6.6e-125 451.1 297 78.5
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 6.6e-125 451.1 297 78.5
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 3.3e-124 448.7 312 74.7
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 1.6e-123 446.4 282 81.9
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 5.3e-122 441.4 275 79.6
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.7e-120 436.4 261 84.3
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.9e-120 435.6 289 76.1
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 2.7e-118 429.1 260 84.2
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 2.8e-115 419.1 255 82.0
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 2.8e-115 419.1 291 72.5
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 4.8e-115 418.3 273 76.6
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 8.1e-115 417.5 255 81.6
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 4.0e-114 415.2 292 74.0
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 4.0e-114 415.2 293 73.4
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 1.2e-113 413.7 324 68.5
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.0e-113 412.9 240 87.1
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 4.5e-113 411.8 302 71.9
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 7.6e-113 411.0 288 69.4
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 3.8e-112 408.7 240 85.8
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 2.4e-111 406.0 249 81.9
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 3.5e-110 402.1 242 83.5
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 2.6e-105 386.0 277 74.7
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 7.9e-102 374.4 289 64.7
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 7.9e-102 374.4 397 55.7
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 6.9e-98 361.3 222 80.6
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 1.1e-87 327.4 276 65.2
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.1e-87 327.4 199 82.4
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 7.2e-87 324.7 406 49.5
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 2.7e-86 322.8 193 80.8
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 1.8e-82 310.1 284 60.6
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 1.6e-78 297.0 272 61.8
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 1.6e-78 297.0 175 85.7
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-70 268.9 171 76.6
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 1.0e-69 267.7 231 64.1
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 7.5e-60 235.0 267 46.1
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 9.7e-60 234.6 195 66.2
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 8.3e-51 204.9 189 61.9
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 6.1e-46 188.7 131 75.6
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 6.1e-46 188.7 131 75.6
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 6.6e-32 142.1 128 61.7
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 7.5e-28 128.6 125 59.2
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 2.1e-22 110.5 67 79.1
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 4.7e-22 109.4 88 64.8
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 4.7e-22 109.4 88 64.8
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 4.7e-22 109.4 78 69.2
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 8.1e-22 108.6 73 68.5
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 3.4e-20 103.2 64 78.1
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 8.6e-16 88.6 50 78.0
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 4.3e-15 86.3 90 52.2
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 1.8e-13 80.9 45 86.7
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.1e-10 71.6 85 51.8
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.1e-10 71.6 85 51.8
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 6.0e-09 65.9 37 89.2
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 7.3e-07 58.9 45 62.2


User provided reference genes

Program Settings