Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23416 Brassica carinata HOM05D000992 ORTHO05D001928 1.3e-60 236.1 112 100.0
BcaB02g11084 Brassica carinata HOM05D000992 ORTHO05D001928 1.5e-40 169.5 90 90.0
BolC7t43735H Brassica oleracea HOM05D000992 ORTHO05D001928 6.3e-31 137.5 86 80.2
BraA06t27316Z Brassica rapa HOM05D000992 ORTHO05D001928 5.3e-30 134.4 94 74.5
BcaC06g34176 Brassica carinata HOM05D000137 ORTHO05D001928 9.1e-30 133.7 84 79.8
C07p31890 Brassica napus HOM05D000992 ORTHO05D001928 9.1e-30 133.7 84 79.8
A06p44420 Brassica napus HOM05D000992 ORTHO05D001928 3.4e-29 131.7 93 74.2
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 1.6e-26 122.9 87 72.4
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 1.0e-25 120.2 87 70.1
Sp2g12920 Schrenkiella parvula HOM05D000992 ORTHO05D001928 1.4e-25 119.8 86 73.3
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 3.0e-25 118.6 87 70.1
CARHR257330 Cardamine hirsuta HOM05D000992 ORTHO05D001928 7.4e-24 114.0 86 68.6
Carub.0005s0043 Capsella rubella HOM05D000992 ORTHO05D001928 1.7e-23 112.8 87 66.7
BcaC06g31305 Brassica carinata HOM05D000992 ORTHO05D001928 1.1e-19 100.1 86 60.5
BcaC06g34175 Brassica carinata HOM05D000992 ORTHO05D001928 1.1e-19 100.1 86 60.5
Thhalv10000916m.g Eutrema salsugineum HOM05D000992 ORTHO05D001928 2.5e-19 99.0 87 57.5
AL5G10450 Arabidopsis lyrata HOM05D000992 ORTHO05D001928 1.4e-17 93.2 57 78.9
AT5G50550 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 8.8e-17 90.5 57 75.4
AT5G50650 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 8.8e-17 90.5 57 75.4
AT2G01470 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 1.5e-16 89.7 57 77.2
BcaB07g30396 Brassica carinata HOM05D000992 ORTHO05D001928 1.7e-15 86.3 89 53.9
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 4.8e-15 84.7 88 52.3
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 4.8e-15 84.7 88 52.3
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 1.1e-14 83.6 59 67.8
Duzib248G0828 Durio zibethinus HOM05D000992 ORTHO05D001928 1.6e-13 79.7 100 43.0
Sc10g0008370 Simmondsia chinensis HOM05D000992 ORTHO05D001928 2.0e-13 79.3 67 52.2
Thecc.02G282800 Theobroma cacao HOM05D000992 ORTHO05D001928 2.0e-13 79.3 86 46.5
THA.LOC104805068 Tarenaya hassleriana HOM05D000992 ORTHO05D001928 2.7e-13 79.0 86 51.2
CANSAT64G2027 Cannabis sativa HOM05D000992 ORTHO05D001928 3.5e-13 78.6 93 44.1
Eucgr.G02182 Eucalyptus grandis HOM05D000992 ORTHO05D001928 5.9e-13 77.8 98 41.8
PGR119G0308 Punica granatum HOM05D000992 ORTHO05D001928 5.9e-13 77.8 81 45.7
Sabra08G0098900 Salix brachista HOM05D000992 ORTHO05D001928 5.9e-13 77.8 67 53.7
Ah.05g177390 Amaranthus hybridus HOM05D000992 ORTHO05D001928 7.7e-13 77.4 84 47.6
Duzib251G0427 Durio zibethinus HOM05D000992 ORTHO05D001928 7.7e-13 77.4 70 51.4
Potri.008G130300 Populus trichocarpa HOM05D000992 ORTHO05D001928 7.7e-13 77.4 98 40.8
Nitab4.5_0007845g0030 Nicotiana tabacum HOM05D000992 ORTHO05D001928 1.3e-12 76.6 88 42.0
Lalb_Chr16g0385011 Lupinus albus HOM05D000992 ORTHO05D001928 1.7e-12 76.3 100 43.0
PGSC0003DMG400006156 Solanum tuberosum HOM05D000992 ORTHO05D001928 1.7e-12 76.3 88 42.0
AUR62023333 Chenopodium quinoa HOM05D000992 ORTHO05D001928 2.2e-12 75.9 67 53.7
TWI31G0575 Tripterygium wilfordii HOM05D000992 ORTHO05D001928 2.2e-12 75.9 103 39.8
AUR62038000 Chenopodium quinoa HOM05D000992 ORTHO05D001928 2.9e-12 75.5 67 52.2
Manes.17G077900 Manihot esculenta HOM05D000992 ORTHO05D001928 2.9e-12 75.5 93 45.2
vmacro00410 Vaccinium macrocarpon HOM05D000992 ORTHO05D001928 2.9e-12 75.5 99 42.4
arahy.Tifrunner.gnm1.ann1.FYKT6P Arachis hypogaea HOM05D000992 ORTHO05D001928 3.8e-12 75.1 71 47.9
QL01p001467 Quercus lobata HOM05D000992 ORTHO05D001928 5.0e-12 74.7 73 50.7
QL02p040832 Quercus lobata HOM05D000992 ORTHO05D001928 5.0e-12 74.7 73 50.7
Actinidia04063 Actinidia chinensis HOM05D000992 ORTHO05D001928 6.5e-12 74.3 100 43.0
Actinidia18442 Actinidia chinensis HOM05D000992 ORTHO05D001928 6.5e-12 74.3 100 44.0
Haze_10992 Corylus avellana HOM05D000992 ORTHO05D001928 6.5e-12 74.3 93 46.2
Dinv07657 Davidia involucrata HOM05D000269 ORTHO05D000216 6.5e-12 74.3 102 42.2
Lj5g0010526 Lotus japonicus HOM05D000992 ORTHO05D001928 6.5e-12 74.3 85 44.7
Lalb_Chr05g0219541 Lupinus albus HOM05D000992 ORTHO05D001928 6.5e-12 74.3 109 42.2
Dinv14423 Davidia involucrata HOM05D000992 ORTHO05D001928 8.5e-12 73.9 108 41.7
QL11p050299 Quercus lobata HOM05D000992 ORTHO05D001928 8.5e-12 73.9 87 43.7
TWI75G1486 Tripterygium wilfordii HOM05D000992 ORTHO05D001928 1.5e-11 73.2 104 41.3
Gohir.A07G097700 Gossypium hirsutum HOM05D000992 ORTHO05D001928 1.9e-11 72.8 100 39.0
Gohir.D07G102000 Gossypium hirsutum HOM05D000992 ORTHO05D001928 1.9e-11 72.8 100 39.0
Gorai.001G109900 Gossypium raimondii HOM05D000992 ORTHO05D001928 1.9e-11 72.8 100 39.0
HPP92_027233 Vanilla planifolia HOM05D000992 ORTHO05D001928 1.9e-11 72.8 67 46.3
SGA_v2.0_scaffold39G15183 Striga asiatica HOM05D000992 ORTHO05D001928 2.5e-11 72.4 67 50.7
Migut.E00433 Erythranthe guttata HOM05D000992 ORTHO05D001928 3.2e-11 72.0 86 43.0
CSS0018449 Camellia sinensis var. sinensis HOM05D000992 ORTHO05D001928 4.2e-11 71.6 67 47.8
Cfa008618 Carpinus fangiana HOM05D000992 ORTHO05D001928 4.2e-11 71.6 95 42.1
EL10Ac1g00687 Beta vulgaris HOM05D000992 ORTHO05D001928 5.5e-11 71.2 84 41.7
arahy.Tifrunner.gnm1.ann1.MZBU3F Arachis hypogaea HOM05D000992 ORTHO05D001928 7.2e-11 70.9 81 44.4
Nitab4.5_0000441g0190 Nicotiana tabacum HOM05D000992 ORTHO05D001928 7.2e-11 70.9 67 46.3
CSS0042156 Camellia sinensis var. sinensis HOM05D000992 ORTHO05D001928 9.4e-11 70.5 94 38.3
CiPaw.06G011200 Carya illinoinensis HOM05D000992 ORTHO05D001928 9.4e-11 70.5 111 33.3
MD13G1024400 Malus domestica HOM05D000992 ORTHO05D001928 9.4e-11 70.5 88 39.8
HanXRQChr11g0320951 Helianthus annuus HOM05D000992 ORTHO05D001928 1.2e-10 70.1 96 39.6
Lsat_1_v5_gn_1_4261 Lactuca sativa HOM05D000992 ORTHO05D001928 1.2e-10 70.1 67 49.3
Nn4g24190 Nelumbo nucifera HOM05D000992 ORTHO05D001928 1.6e-10 69.7 102 39.2
RcHm_v2.0_Chr4g0441451 Rosa chinensis HOM05D000992 ORTHO05D001928 1.6e-10 69.7 91 38.5
TAR371G0875 Trochodendron aralioides HOM05D000992 ORTHO05D001928 1.6e-10 69.7 67 47.8
unitig_22.g5587 Utricularia gibba HOM05D000992 ORTHO05D001928 1.6e-10 69.7 66 43.9
Actinidia04657 Actinidia chinensis HOM05D000992 ORTHO05D001928 2.1e-10 69.3 70 45.7
COL.COLO4_13161 Corchorus olitorius HOM05D000992 ORTHO05D001928 2.1e-10 69.3 60 53.3
Lsat_1_v5_gn_9_43601 Lactuca sativa HOM05D000992 ORTHO05D001928 2.1e-10 69.3 96 40.6
MD16G1027100 Malus domestica HOM05D000992 ORTHO05D001928 3.6e-10 68.6 72 40.3
ClCG11G001240 Citrullus lanatus HOM05D000992 ORTHO05D001928 4.7e-10 68.2 65 47.7
CDE02G4261 Ceratophyllum demersum HOM05D000992 ORTHO05D001928 6.1e-10 67.8 89 34.8
Ca_18738_v3 Cicer arietinum L. HOM05D000992 ORTHO05D001928 6.1e-10 67.8 69 46.4
Ca_30875_v3 Cicer arietinum L. HOM05D000992 ORTHO05D001928 6.1e-10 67.8 69 46.4
HanXRQChr02g0044681 Helianthus annuus HOM05D000992 ORTHO05D001928 6.1e-10 67.8 91 39.6
ECA247G3162 Erigeron canadensis HOM05D000992 ORTHO05D001928 8.0e-10 67.4 80 40.0
HanXRQChr12g0377541 Helianthus annuus HOM05D000992 ORTHO05D001928 8.0e-10 67.4 68 45.6
Hund17156 Selenicereus undatus HOM05D000992 ORTHO05D001928 1.0e-09 67.0 68 51.5
SalBow8G2514 Salvia bowleyana HOM05D000992 ORTHO05D001928 1.4e-09 66.6 71 40.8
Aqoxy7G00061 Aquilegia oxysepala HOM05D000992 ORTHO05D001928 1.8e-09 66.2 101 36.6
ECA232G2145 Erigeron canadensis HOM05D000992 ORTHO05D001928 3.0e-09 65.5 95 36.8
Rhsim06G0241000 Rhododendron simsii HOM05D000992 ORTHO05D001928 3.0e-09 65.5 60 48.3
SHI03261 Sapria himalayana HOM05D000992 ORTHO05D001928 4.0e-09 65.1 66 48.5
PSO017G5972 Papaver somniferum HOM05D000992 ORTHO05D001928 5.2e-09 64.7 69 49.3
TPR.G27486 Trifolium pratense HOM05D000992 ORTHO05D001928 6.8e-09 64.3 109 36.7
CsaV3_5G013310 Cucumis sativus L. HOM05D000992 ORTHO05D001928 8.8e-09 63.9 65 44.6
SalBow1G5429 Salvia bowleyana HOM05D000992 ORTHO05D001928 8.8e-09 63.9 72 41.7
SalBow7G0291 Salvia bowleyana HOM05D000992 ORTHO05D001928 8.8e-09 63.9 72 41.7
Hma1.2p1_1346F.1_g277200 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 1.2e-08 63.5 60 48.3
Hma1.2p1_1764F.1_g301400 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 1.2e-08 63.5 60 48.3
VMungo0251G1193 Vigna mungo HOM05D000992 ORTHO05D001928 1.2e-08 63.5 105 39.0
FvH4_4g32580 Fragaria vesca HOM05D000992 ORTHO05D001928 1.5e-08 63.2 69 46.4
FAN17G2843 Fragaria x ananassa HOM05D000992 ORTHO05D001928 1.5e-08 63.2 69 46.4
MD08G1204700 Malus domestica HOM05D000992 ORTHO05D001928 1.5e-08 63.2 72 38.9
Cpa.g.sc65.153 Carica papaya HOM05D000992 ORTHO05D001928 2.0e-08 62.8 59 49.2
FAN07G2064 Fragaria x ananassa HOM05D000992 ORTHO05D001928 2.0e-08 62.8 69 46.4
FAN12G1857 Fragaria x ananassa HOM05D000992 ORTHO05D001928 2.0e-08 62.8 69 46.4
Oeu005277.1 Olea europaea HOM05D000992 ORTHO05D001928 2.0e-08 62.8 58 48.3
PSO478G1659 Papaver somniferum HOM05D000992 ORTHO05D001928 2.0e-08 62.8 60 55.0
Phvul.002G095100 Phaseolus vulgaris HOM05D000992 ORTHO05D001928 2.6e-08 62.4 91 41.8
Cc11_g08530 Coffea canephora HOM05D000992 ORTHO05D001928 3.4e-08 62.0 57 47.4
Solyc07g047970.4 Solanum lycopersicum HOM05D000992 ORTHO05D001928 5.7e-08 61.2 60 45.0
Manes.15G128400 Manihot esculenta HOM05D000992 ORTHO05D001928 7.5e-08 60.8 57 50.9
PSO063G7085 Papaver somniferum HOM05D000992 ORTHO05D001928 9.8e-08 60.5 68 48.5
Ciclev10015444m.g Citrus clementina HOM05D000992 ORTHO05D001928 1.3e-07 60.1 58 48.3
Glyma.07G218700 Glycine max HOM05D000992 ORTHO05D001928 1.3e-07 60.1 100 35.0
PSO782G4161 Papaver somniferum HOM05D000992 ORTHO05D001928 1.7e-07 59.7 69 44.9
Sopen07g024400 Solanum pennellii HOM05D000992 ORTHO05D001928 1.7e-07 59.7 88 34.1
Medtr4g084650 Medicago truncatula HOM05D000992 ORTHO05D001928 3.7e-07 58.5 83 36.1
Peaxi162Scf00776g00324 Petunia axillaris HOM05D000992 ORTHO05D001928 3.7e-07 58.5 58 46.6
Sabra10G0082200 Salix brachista HOM05D000992 ORTHO05D001928 3.7e-07 58.5 58 43.1
TAR629G1759 Trochodendron aralioides HOM05D000992 ORTHO05D001928 3.7e-07 58.5 60 45.0
Atru.chr11.373 Acer truncatum HOM05D000992 ORTHO05D001928 4.8e-07 58.2 58 43.1
Potri.010G111800 Populus trichocarpa HOM05D000992 ORTHO05D001928 8.3e-07 57.4 58 43.1
Peaxi162Scf00276g00615 Petunia axillaris HOM05D000992 ORTHO05D001928 1.4e-06 56.6 58 44.8
Hma1.2p1_3119F.1_g332850 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 1.8e-06 56.2 69 44.9
Pp3c22_1410 Physcomitrium patens HOM05D000992 ORTHO05D001928 9.1e-06 53.9 65 35.4


User provided reference genes

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