Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.9e-178 629.0 315 100.0
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 2.7e-164 582.0 318 91.5
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 2.7e-164 582.0 318 91.5
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 1.1e-160 570.1 319 90.3
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 4.1e-160 568.2 319 90.0
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 1.6e-153 546.2 318 87.1
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 1.6e-153 546.2 318 87.1
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 2.2e-150 535.8 317 86.4
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 2.9e-150 535.4 318 87.4
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 1.6e-148 529.6 318 86.5
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 1.4e-144 516.5 316 81.0
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.4e-144 516.5 316 83.5
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 1.5e-143 513.1 317 83.9
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 4.5e-143 511.5 317 83.3
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 6.1e-140 501.1 311 79.4
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 7.4e-138 494.2 314 80.3
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 1.6e-135 486.5 265 87.9
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 4.2e-133 478.4 317 73.2
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 7.2e-117 424.5 318 66.7
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 1.2e-103 380.6 329 59.3
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 7.8e-103 377.9 319 60.8
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.0e-102 377.5 320 60.0
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.2e-100 370.5 318 59.1
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 8.0e-100 367.9 321 60.1
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 8.0e-100 367.9 271 65.3
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 1.4e-99 367.1 319 58.6
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 3.1e-99 365.9 330 57.9
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 4.0e-99 365.5 268 64.9
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 6.8e-99 364.8 320 58.8
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 6.8e-99 364.8 320 58.8
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.0e-98 363.2 320 58.4
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 4.4e-98 362.1 321 57.6
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 4.4e-98 362.1 274 66.1
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.3e-97 360.5 330 57.6
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 2.9e-97 359.4 260 65.0
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 2.9e-97 359.4 260 65.0
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 2.9e-97 359.4 315 59.4
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 2.9e-97 359.4 328 60.1
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 4.9e-97 358.6 320 57.2
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 8.3e-97 357.8 263 66.5
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 1.9e-96 356.7 274 62.8
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 2.4e-96 356.3 263 63.9
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 3.2e-96 355.9 320 59.1
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 4.1e-96 355.5 329 55.0
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 9.2e-96 354.4 317 55.8
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 1.2e-95 354.0 310 58.7
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 6.0e-95 351.7 258 67.4
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 1.0e-94 350.9 319 56.7
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.3e-94 350.5 320 59.1
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 2.3e-94 349.7 236 69.1
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 2.3e-94 349.7 319 57.4
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 5.0e-94 348.6 323 57.0
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 6.6e-94 348.2 270 64.1
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 1.1e-93 347.4 314 57.3
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.5e-93 347.1 279 62.4
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 1.9e-93 346.7 270 63.0
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 7.3e-93 344.7 320 57.5
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 9.5e-93 344.4 319 56.4
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 1.2e-92 344.0 294 65.0
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.2e-92 344.0 306 57.2
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 1.2e-92 344.0 270 63.3
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 2.1e-92 343.2 323 57.0
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 2.8e-92 342.8 268 63.4
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 4.7e-92 342.0 311 56.3
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 4.7e-92 342.0 321 55.1
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 2.3e-91 339.7 320 54.4
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 2.3e-91 339.7 314 57.6
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 6.8e-91 338.2 320 56.2
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 2.0e-90 336.7 249 65.1
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.6e-90 336.3 274 61.7
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 4.4e-90 335.5 320 57.8
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 5.8e-90 335.1 268 59.3
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 7.5e-90 334.7 260 65.8
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.7e-89 333.6 259 59.8
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 1.7e-89 333.6 273 59.7
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 2.2e-89 333.2 314 54.5
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 2.2e-89 333.2 279 66.3
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 2.2e-89 333.2 316 57.6
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.2e-89 333.2 316 57.6
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 6.4e-89 331.6 318 54.4
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 8.3e-89 331.3 279 58.1
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 1.4e-88 330.5 267 61.8
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 3.2e-88 329.3 258 61.2
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 7.1e-88 328.2 279 58.8
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 7.1e-88 328.2 279 58.8
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 9.2e-88 327.8 274 57.3
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 2.1e-87 326.6 321 54.5
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 3.5e-87 325.9 268 59.3
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 4.6e-87 325.5 368 50.3
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 7.8e-87 324.7 264 60.2
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 1.3e-86 323.9 291 55.7
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 2.3e-86 323.2 280 57.1
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 2.3e-86 323.2 279 57.3
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.0e-86 322.8 316 56.3
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 3.0e-86 322.8 377 49.1
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 8.6e-86 321.2 258 60.1
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 4.3e-85 318.9 240 70.4
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 5.6e-85 318.5 320 51.9
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 1.2e-84 317.4 273 57.9
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 1.2e-84 317.4 211 70.6
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 3.6e-84 315.8 280 53.2
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 6.2e-84 315.1 280 53.6
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 6.2e-84 315.1 286 56.6
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 4.0e-83 312.4 234 64.1
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 1.5e-82 310.5 233 59.7
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 5.8e-82 308.5 243 68.3
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 8.4e-81 304.7 320 53.4
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 1.7e-78 297.0 214 66.4
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 5.1e-78 295.4 323 51.4
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 3.6e-76 289.3 218 66.5
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.4e-74 282.7 210 67.6
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 5.8e-74 282.0 320 50.0
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 9.9e-74 281.2 321 48.9
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 2.7e-63 246.5 215 53.0
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 6.0e-63 245.4 290 49.3
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 2.4e-56 223.4 299 43.5
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 2.3e-54 216.9 276 42.8
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 6.9e-51 205.3 205 54.6
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 8.4e-49 198.4 314 37.6
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.2e-47 194.5 225 42.2
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 2.1e-47 193.7 228 50.4
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.5e-42 177.6 129 64.3
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 1.3e-41 174.5 240 42.9
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 8.5e-41 171.8 218 45.9
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 7.2e-40 168.7 196 45.4
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 2.3e-38 163.7 203 39.9
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 1.5e-37 161.0 162 54.3
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 2.8e-36 156.8 189 48.1
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 1.8e-35 154.1 258 40.7
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.5e-34 151.0 201 41.3
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 1.9e-32 144.1 111 60.4
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 7.9e-31 138.7 93 72.0
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 1.5e-26 124.4 264 32.2
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.5e-26 124.4 106 59.4
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 5.0e-25 119.4 130 47.7
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 3.5e-18 96.7 194 29.4
CARHR258970 Cardamine hirsuta HOM05D005396 ORTHO05D006400 6.7e-14 82.4 49 73.5
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 2.9e-09 67.0 43 62.8
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 2.7e-07 60.5 57 57.9


User provided reference genes

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