Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21979 Brassica carinata HOM05D000113 ORTHO05D095701 4.4e-59 231.1 117 100.0
BcaB05g22424 Brassica carinata HOM05D000113 ORTHO05D005275 3.0e-23 112.1 81 75.3
BcaB03g13662 Brassica carinata HOM05D000113 ORTHO05D005275 3.0e-15 85.5 79 64.6
BcaB05g22182 Brassica carinata HOM05D000113 ORTHO05D005275 2.5e-14 82.4 80 63.8
Thhalv10006970m.g Eutrema salsugineum HOM05D000113 ORTHO05D005275 3.3e-14 82.0 90 57.8
Sp1g22320 Schrenkiella parvula HOM05D000113 ORTHO05D005275 4.7e-13 78.2 47 85.1
AT1G26370 Arabidopsis thaliana HOM05D000113 ORTHO05D005275 2.3e-12 75.9 47 80.9
AL1G39390 Arabidopsis lyrata HOM05D000113 ORTHO05D005275 3.1e-12 75.5 47 80.9
Carub.0001s2464 Capsella rubella HOM05D000113 ORTHO05D005275 3.1e-12 75.5 47 80.9
A09p39820 Brassica napus HOM05D000113 ORTHO05D005275 4.0e-12 75.1 46 82.6
BolC5t31194H Brassica oleracea HOM05D000113 ORTHO05D005275 4.0e-12 75.1 46 82.6
BraA09t39482Z Brassica rapa HOM05D000113 ORTHO05D005275 4.0e-12 75.1 46 82.6
HanXRQChr09g0255851 Helianthus annuus HOM05D000113 ORTHO05D005275 6.8e-12 74.3 53 69.8
HanXRQChr10g0308691 Helianthus annuus HOM05D000113 ORTHO05D005275 6.8e-12 74.3 53 69.8
BcaC05g26419 Brassica carinata HOM05D000113 ORTHO05D005275 8.9e-12 73.9 44 84.1
C05p24580 Brassica napus HOM05D000113 ORTHO05D005275 8.9e-12 73.9 44 84.1
CARHR025560 Cardamine hirsuta HOM05D000113 ORTHO05D005275 8.9e-12 73.9 94 50.0
Aa31LG7G8680 Aethionema arabicum HOM05D000113 ORTHO05D005275 1.2e-11 73.6 47 76.6
HanXRQChr10g0289581 Helianthus annuus HOM05D000113 ORTHO05D005275 2.0e-11 72.8 53 67.9
A02p07730 Brassica napus HOM05D000113 ORTHO05D005275 2.6e-11 72.4 55 76.4
A08p27310 Brassica napus HOM05D000113 ORTHO05D005275 2.6e-11 72.4 85 52.9
BolC3t19549H Brassica oleracea HOM05D000113 ORTHO05D005275 2.6e-11 72.4 85 52.9
BraA08t34674Z Brassica rapa HOM05D000113 ORTHO05D005275 2.6e-11 72.4 85 52.9
BcaC01g01728 Brassica carinata HOM05D000113 ORTHO05D005275 3.4e-11 72.0 86 52.3
BcaC03g14099 Brassica carinata HOM05D000113 ORTHO05D005275 3.4e-11 72.0 49 79.6
C03p72480 Brassica napus HOM05D000113 ORTHO05D005275 3.4e-11 72.0 86 52.3
THA.LOC104822003 Tarenaya hassleriana HOM05D000113 ORTHO05D005275 3.4e-11 72.0 85 50.6
Peaxi162Scf00175g00336 Petunia axillaris HOM05D000113 ORTHO05D005275 5.8e-11 71.2 62 62.9
SalBow5G0811 Salvia bowleyana HOM05D000113 ORTHO05D005275 5.8e-11 71.2 46 67.4
C02p13390 Brassica napus HOM05D000113 ORTHO05D005275 9.9e-11 70.5 45 80.0
BolC2t07451H Brassica oleracea HOM05D000113 ORTHO05D005275 9.9e-11 70.5 45 80.0
CSS0007361 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005275 9.9e-11 70.5 45 77.8
Oeu055086.2 Olea europaea HOM05D000113 ORTHO05D005275 9.9e-11 70.5 45 73.3
PGR119G1357 Punica granatum HOM05D000113 ORTHO05D005275 9.9e-11 70.5 45 77.8
SalBow2G1167 Salvia bowleyana HOM05D000113 ORTHO05D006344 9.9e-11 70.5 46 67.4
PGSC0003DMG400021559 Solanum tuberosum HOM05D000113 ORTHO05D005275 2.2e-10 69.3 61 62.3
Thecc.02G329200 Theobroma cacao HOM05D000113 ORTHO05D005275 2.2e-10 69.3 44 75.0
CANSAT80G1638 Cannabis sativa HOM05D000113 ORTHO05D005275 2.9e-10 68.9 45 73.3
Duzib248G1124 Durio zibethinus HOM05D000113 ORTHO05D005275 3.7e-10 68.6 44 70.5
Rhsim02G0237800 Rhododendron simsii HOM05D000113 ORTHO05D005275 3.7e-10 68.6 81 50.6
Atru.chr11.1616 Acer truncatum HOM05D000113 ORTHO05D005275 4.9e-10 68.2 48 70.8
Cc11_g11870 Coffea canephora HOM05D000113 ORTHO05D005275 4.9e-10 68.2 44 75.0
Lj5A708G44 Lonicera japonica HOM05D000113 ORTHO05D005275 4.9e-10 68.2 45 73.3
Rhsim09G0126500 Rhododendron simsii HOM05D000113 ORTHO05D005275 4.9e-10 68.2 82 48.8
COL.COLO4_27868 Corchorus olitorius HOM05D000113 ORTHO05D005275 6.4e-10 67.8 44 75.0
Dinv34061 Davidia involucrata HOM05D000113 ORTHO05D005275 6.4e-10 67.8 45 75.6
Rhsim02G0237700 Rhododendron simsii HOM05D000113 ORTHO05D005275 6.4e-10 67.8 81 49.4
TAR629G2267 Trochodendron aralioides HOM05D000113 ORTHO05D005275 6.4e-10 67.8 45 71.1
Cpa.g.sc1.137 Carica papaya HOM05D000113 ORTHO05D005275 8.3e-10 67.4 51 64.7
Ciclev10030826m.g Citrus clementina HOM05D000113 ORTHO05D005275 8.3e-10 67.4 48 75.0
Lsat_1_v5_gn_4_71281 Lactuca sativa HOM05D000113 ORTHO05D005275 8.3e-10 67.4 43 79.1
PSO210G5172 Papaver somniferum HOM05D000113 ORTHO05D005275 8.3e-10 67.4 45 71.1
SGA_v2.0_scaffold16G07797 Striga asiatica HOM05D000113 ORTHO05D005275 8.3e-10 67.4 46 65.2
EL10Ac6g15011 Beta vulgaris HOM05D000113 ORTHO05D005275 1.1e-09 67.0 48 68.8
PSO210G0475 Papaver somniferum HOM05D000113 ORTHO05D005275 1.4e-09 66.6 45 73.3
Nitab4.5_0000231g0200 Nicotiana tabacum HOM05D000113 ORTHO05D005275 1.9e-09 66.2 44 72.7
Psat3g063880 Pisum sativum HOM05D000113 ORTHO05D005275 1.9e-09 66.2 45 71.1
Cfa008870 Carpinus fangiana HOM05D000113 ORTHO05D005275 2.4e-09 65.9 44 72.7
Cfa016355 Carpinus fangiana HOM05D000113 ORTHO05D005275 2.4e-09 65.9 44 72.7
AUR62003089 Chenopodium quinoa HOM05D000113 ORTHO05D005275 2.4e-09 65.9 50 62.0
AUR62007906 Chenopodium quinoa HOM05D000113 ORTHO05D005275 2.4e-09 65.9 50 62.0
Haze_00104 Corylus avellana HOM05D000113 ORTHO05D005275 2.4e-09 65.9 44 72.7
Haze_11897 Corylus avellana HOM05D000113 ORTHO05D005275 2.4e-09 65.9 44 72.7
Gohir.D12G163900 Gossypium hirsutum HOM05D000113 ORTHO05D005275 2.4e-09 65.9 44 70.5
Lj1g0019901 Lotus japonicus HOM05D000113 ORTHO05D005275 2.4e-09 65.9 42 73.8
Medtr4g094992 Medicago truncatula HOM05D000113 ORTHO05D005275 2.4e-09 65.9 42 76.2
TPR.G35672 Trifolium pratense HOM05D000113 ORTHO05D005275 2.4e-09 65.9 52 63.5
Gorai.008G176500 Gossypium raimondii HOM05D000113 ORTHO05D005275 3.2e-09 65.5 44 70.5
Nitab4.5_0007061g0070 Nicotiana tabacum HOM05D000113 ORTHO05D005275 3.2e-09 65.5 44 72.7
TWI53G0088 Tripterygium wilfordii HOM05D000113 ORTHO05D005275 3.2e-09 65.5 48 68.8
Actinidia05046 Actinidia chinensis HOM05D000113 ORTHO05D005275 4.1e-09 65.1 44 75.0
Ca_08609_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005275 4.1e-09 65.1 41 78.0
Ca_25694_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005275 4.1e-09 65.1 56 60.7
Medtr7g095080 Medicago truncatula HOM05D000113 ORTHO05D005275 4.1e-09 65.1 41 78.0
vmacro01068 Vaccinium macrocarpon HOM05D000113 ORTHO05D005275 4.1e-09 65.1 44 72.7
CsaV3_3G005160 Cucumis sativus L. HOM05D000113 ORTHO05D005275 5.4e-09 64.7 45 71.1
CSS0004542 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D005275 7.1e-09 64.3 56 60.7
Gohir.A12G160600 Gossypium hirsutum HOM05D000113 ORTHO05D005275 7.1e-09 64.3 44 70.5
Nn3g17473 Nelumbo nucifera HOM05D000113 ORTHO05D005275 7.1e-09 64.3 44 72.7
QL03p073935 Quercus lobata HOM05D000113 ORTHO05D005275 7.1e-09 64.3 44 70.5
VMungo1215G0191 Vigna mungo HOM05D000113 ORTHO05D005275 7.1e-09 64.3 41 75.6
Aqoxy3G03672 Aquilegia oxysepala HOM05D000113 ORTHO05D005275 1.2e-08 63.5 48 66.7
Eucgr.G02435 Eucalyptus grandis HOM05D000113 ORTHO05D005275 1.2e-08 63.5 50 64.0
Manes.01G027000 Manihot esculenta HOM05D000113 ORTHO05D005275 1.2e-08 63.5 47 70.2
ClCG10G005420 Citrullus lanatus HOM05D000113 ORTHO05D005275 1.6e-08 63.2 44 70.5
MELO3C025381.2 Cucumis melo HOM05D000113 ORTHO05D005275 1.6e-08 63.2 45 66.7
Os06g0192500 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D005275 1.6e-08 63.2 45 64.4
Psat5g075640 Pisum sativum HOM05D000113 ORTHO05D005275 1.6e-08 63.2 45 66.7
Aqoxy6G01562 Aquilegia oxysepala HOM05D000113 ORTHO05D005275 2.1e-08 62.8 39 74.4
FvH4_4g29860 Fragaria vesca HOM05D000113 ORTHO05D005275 2.1e-08 62.8 39 74.4
FAN12G3277 Fragaria x ananassa HOM05D000113 ORTHO05D005275 2.1e-08 62.8 39 74.4
Lj6A778G59 Lonicera japonica HOM05D000113 ORTHO05D005275 2.1e-08 62.8 45 68.9
Phvul.003G041900 Phaseolus vulgaris HOM05D000113 ORTHO05D005275 2.1e-08 62.8 41 73.2
RcHm_v2.0_Chr4g0438111 Rosa chinensis HOM05D000113 ORTHO05D005275 2.1e-08 62.8 39 74.4
HPP92_016253 Vanilla planifolia HOM05D000113 ORTHO05D005275 2.1e-08 62.8 42 73.8
Aqoxy2G00163 Aquilegia oxysepala HOM05D000113 ORTHO05D005275 2.7e-08 62.4 40 75.0
CiPaw.12G001100 Carya illinoinensis HOM05D000113 ORTHO05D005275 2.7e-08 62.4 43 72.1
ECA234G2988 Erigeron canadensis HOM05D000113 ORTHO05D005275 2.7e-08 62.4 50 64.0
MD16G1060000 Malus domestica HOM05D000113 ORTHO05D005275 4.6e-08 61.6 39 71.8
Solyc09g008120.4 Solanum lycopersicum HOM05D000113 ORTHO05D005275 4.6e-08 61.6 50 64.0
Sopen09g002920 Solanum pennellii HOM05D000113 ORTHO05D005275 4.6e-08 61.6 50 64.0
CAN.G900.42 Capsicum annuum HOM05D000113 ORTHO05D005275 6.0e-08 61.2 50 64.0
FAN17G2025 Fragaria x ananassa HOM05D000113 ORTHO05D005275 6.0e-08 61.2 39 71.8
HanXRQChr09g0255841 Helianthus annuus HOM05D000113 ORTHO05D005275 6.0e-08 61.2 48 64.6
Hund05834 Selenicereus undatus HOM05D000113 ORTHO05D005275 6.0e-08 61.2 57 57.9
RcHm_v2.0_Chr6g0281861 Rosa chinensis HOM05D000113 ORTHO05D005275 1.0e-07 60.5 80 47.5
Glyma.01G060700 Glycine max HOM05D000113 ORTHO05D005275 2.3e-07 59.3 50 62.0
Glyma.02G119000 Glycine max HOM05D000113 ORTHO05D005275 2.3e-07 59.3 50 62.0
Sed0027945 Sechium edule HOM05D000113 ORTHO05D005275 2.3e-07 59.3 42 66.7
Potri.008G096800 Populus trichocarpa HOM05D000113 ORTHO05D005275 3.0e-07 58.9 46 67.4
arahy.Tifrunner.gnm1.ann1.WR30JV Arachis hypogaea HOM05D000113 ORTHO05D005275 3.9e-07 58.5 50 58.0
SHI27077 Sapria himalayana HOM05D000113 ORTHO05D005275 3.9e-07 58.5 43 69.8
arahy.Tifrunner.gnm1.ann1.XH9CJD Arachis hypogaea HOM05D000113 ORTHO05D005275 6.6e-07 57.8 50 58.0
Lalb_Chr17g0341251 Lupinus albus HOM05D000113 ORTHO05D005275 6.6e-07 57.8 50 62.0
Prupe.1G288500 Prunus persica HOM05D000113 ORTHO05D005275 6.6e-07 57.8 50 56.0
CsaV3_6G002520 Cucumis sativus L. HOM05D000113 ORTHO05D005275 8.6e-07 57.4 44 65.9
arahy.Tifrunner.gnm1.ann1.YJ9NI9 Arachis hypogaea HOM05D000113 ORTHO05D005275 1.1e-06 57.0 42 64.3
FAN15G3164 Fragaria x ananassa HOM05D000113 ORTHO05D005275 1.1e-06 57.0 80 46.2
Sabra08G0073100 Salix brachista HOM05D000113 ORTHO05D005275 1.1e-06 57.0 46 63.0
Actinidia16157 Actinidia chinensis HOM05D000113 ORTHO05D005275 1.5e-06 56.6 42 69.0
Zm00001eb363860 Zea mays HOM05D000113 ORTHO05D005275 1.5e-06 56.6 50 54.0
Mapoly0164s0016 Marchantia polymorpha HOM05D000113 ORTHO05D005275 1.9e-06 56.2 51 56.9
ATR1101G079 Amborella trichopoda HOM05D000113 ORTHO05D005275 2.5e-06 55.8 50 62.0
arahy.Tifrunner.gnm1.ann1.HP0K55 Arachis hypogaea HOM05D000113 ORTHO05D005275 2.5e-06 55.8 60 48.3
HPP92_016216 Vanilla planifolia HOM05D000113 ORTHO05D005275 2.5e-06 55.8 47 61.7
arahy.Tifrunner.gnm1.ann1.Q5GMA1 Arachis hypogaea HOM05D000113 ORTHO05D005275 3.3e-06 55.5 50 56.0
GSVIVG01000554001 Vitis vinifera HOM05D003359 ORTHO05D005275 4.3e-06 55.1 50 56.0
Psat3g191640 Pisum sativum HOM05D000113 ORTHO05D005275 9.5e-06 53.9 50 56.0
Sc14g0007960 Simmondsia chinensis HOM05D000113 ORTHO05D005275 9.5e-06 53.9 50 54.0


User provided reference genes

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