Gene: Sopen09g002920

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g002920
  • Transcript Identifier Sopen09g002920.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 1626565-1635160 : positive

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g002920.1

Descriptions

  • Description RNA helicase family protein | FUNCTIONS IN: in 6 functions | INVOLVED IN: biological_process unknown | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Helicase-associated domain , ATPase, AAA type, core , Domain of unknown function DUF1605 , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043484
ISO
PLAZA Integrative Orthologyregulation of RNA splicing AT1G26370

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004386
IEA
InterProhelicase activity
GO:0005524
ISO
PLAZA Homology (enrichment)ATP binding HOM05D000113

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G26370
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G26370

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR007502 Helicase-associated domain
IPR011709 Domain of unknown function DUF1605
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
Mapman id Description
16.2.7.1.7 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Prp22)