Gene: Solyc09g008120.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc09g008120.4
  • Transcript Identifier Solyc09g008120.4.1
  • Gene Type Coding gene
  • Location SL4.0ch09 : 1610621-1619170 : positive

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc09g008120.4.1
  • uniprot A0A3Q7HW86
  • gene_id Solyc09g008120

Descriptions

  • Description RNA helicase family protein (AHRD V3.3 *** A0A2U1N4E5_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045943
IBA
GOA Databasepositive regulation of transcription by RNA polymerase I
GO:0043484
ISO
PLAZA Integrative Orthologyregulation of RNA splicing AT1G26370

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0003723
IBA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IBA
GOA Databasenucleolus
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G26370

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR007502 Helicase-associated domain
IPR011709 Domain of unknown function DUF1605
IPR001650 Helicase, C-terminal
Mapman id Description
16.2.7.1.7 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Prp22)