Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21866 Brassica carinata HOM05D001458 ORTHO05D094148 2.0e-58 228.8 110 100.0
BcaC06g32012 Brassica carinata HOM05D001458 ORTHO05D006787 4.6e-10 68.2 51 70.6
AL6G12090 Arabidopsis lyrata HOM05D001458 ORTHO05D006787 8.7e-09 63.9 37 83.8
AT5G02820 Arabidopsis thaliana HOM05D001458 ORTHO05D006787 8.7e-09 63.9 37 83.8
A10p32900 Brassica napus HOM05D001458 ORTHO05D006787 8.7e-09 63.9 37 83.8
C09p73830 Brassica napus HOM05D001458 ORTHO05D006787 8.7e-09 63.9 37 83.8
BolC9t60117H Brassica oleracea HOM05D001458 ORTHO05D006787 8.7e-09 63.9 37 83.8
BraA10t45327Z Brassica rapa HOM05D001458 ORTHO05D006787 8.7e-09 63.9 37 83.8
Carub.0006s0162 Capsella rubella HOM05D001458 ORTHO05D006787 8.7e-09 63.9 37 83.8
CARHR210510 Cardamine hirsuta HOM05D001458 ORTHO05D006787 8.7e-09 63.9 37 83.8
Thhalv10015802m.g Eutrema salsugineum HOM05D001458 ORTHO05D006787 8.7e-09 63.9 37 83.8
Sp6g39760 Schrenkiella parvula HOM05D001458 ORTHO05D006787 8.7e-09 63.9 37 83.8
Ciclev10011761m.g Citrus clementina HOM05D001458 ORTHO05D006787 1.9e-08 62.8 37 81.1
THA.LOC104816314 Tarenaya hassleriana HOM05D001458 ORTHO05D006787 1.9e-08 62.8 37 81.1
Sc07g0006220 Simmondsia chinensis HOM05D001458 ORTHO05D006787 3.3e-08 62.0 37 81.1
Aa31LG1G22080 Aethionema arabicum HOM05D001458 ORTHO05D006787 4.3e-08 61.6 37 78.4
HanXRQChr02g0051861 Helianthus annuus HOM05D001458 ORTHO05D006787 4.3e-08 61.6 37 78.4
Lsat_1_v5_gn_6_29580 Lactuca sativa HOM05D001458 ORTHO05D006787 4.3e-08 61.6 37 78.4
Atru.BG.202.p Acer truncatum HOM05D001458 ORTHO05D006787 7.3e-08 60.8 37 78.4
Cc06_g03430 Coffea canephora HOM05D001458 ORTHO05D006787 7.3e-08 60.8 37 78.4
ECA233G5957 Erigeron canadensis HOM05D001458 ORTHO05D006787 7.3e-08 60.8 37 75.7
RhsimUnG0119500 Rhododendron simsii HOM05D001458 ORTHO05D006787 7.3e-08 60.8 37 78.4
TWI18G0556 Tripterygium wilfordii HOM05D001458 ORTHO05D006787 7.3e-08 60.8 37 75.7
vmacro20070 Vaccinium macrocarpon HOM05D001458 ORTHO05D006787 7.3e-08 60.8 37 78.4
AUR62040528 Chenopodium quinoa HOM05D001458 ORTHO05D006787 9.6e-08 60.5 62 53.2
AUR62042916 Chenopodium quinoa HOM05D001458 ORTHO05D006787 9.6e-08 60.5 62 53.2
DCAR_009271 Daucus carota HOM05D001458 ORTHO05D006787 1.3e-07 60.1 37 75.7
Actinidia11230 Actinidia chinensis HOM05D001458 ORTHO05D006787 1.6e-07 59.7 37 75.7
Ah.15g092050 Amaranthus hybridus HOM05D001458 ORTHO05D006787 1.6e-07 59.7 62 51.6
Potri.006G132600 Populus trichocarpa HOM05D001458 ORTHO05D006787 1.6e-07 59.7 37 75.7
Cpa.g.sc45.25 Carica papaya HOM05D001458 ORTHO05D006787 2.1e-07 59.3 37 73.0
ClCG04G008770 Citrullus lanatus HOM05D001458 ORTHO05D006787 2.1e-07 59.3 37 73.0
COL.COLO4_27103 Corchorus olitorius HOM05D001458 ORTHO05D006787 2.1e-07 59.3 37 75.7
Duzib128G1651 Durio zibethinus HOM05D001458 ORTHO05D006787 2.1e-07 59.3 37 75.7
Gohir.A04G077200 Gossypium hirsutum HOM05D001458 ORTHO05D006787 2.1e-07 59.3 37 73.0
Gohir.D04G116300 Gossypium hirsutum HOM05D001458 ORTHO05D006787 2.1e-07 59.3 37 73.0
Gorai.009G420900 Gossypium raimondii HOM05D001458 ORTHO05D006787 2.1e-07 59.3 37 73.0
Manes.09G070800 Manihot esculenta HOM05D001458 ORTHO05D006787 2.1e-07 59.3 37 73.0
Thecc.05G052100 Theobroma cacao HOM05D001458 ORTHO05D006787 2.1e-07 59.3 37 75.7
Hma1.2p1_0350F.1_g132690 Hydrangea macrophylla HOM05D001458 ORTHO05D006787 2.8e-07 58.9 37 75.7
Lj3A977T51 Lonicera japonica HOM05D001458 ORTHO05D006787 2.8e-07 58.9 37 75.7
Nitab4.5_0000848g0150 Nicotiana tabacum HOM05D001458 ORTHO05D006787 2.8e-07 58.9 37 75.7
Oeu034821.1 Olea europaea HOM05D001458 ORTHO05D006787 2.8e-07 58.9 37 75.7
Peaxi162Scf01517g00015 Petunia axillaris HOM05D001458 ORTHO05D006787 2.8e-07 58.9 37 70.3
Prupe.6G243200 Prunus persica HOM05D001458 ORTHO05D006787 2.8e-07 58.9 37 73.0
MELO3C003071.2 Cucumis melo HOM05D001458 ORTHO05D006787 3.6e-07 58.5 37 70.3
CsaV3_4G024390 Cucumis sativus L. HOM05D001458 ORTHO05D006787 3.6e-07 58.5 37 70.3
SalBow4G2907 Salvia bowleyana HOM05D001458 ORTHO05D006787 4.8e-07 58.2 37 70.3
Sed0021994 Sechium edule HOM05D001458 ORTHO05D006787 4.8e-07 58.2 37 67.6
SGA_v2.0_scaffold94G28657 Striga asiatica HOM05D001458 ORTHO05D006787 4.8e-07 58.2 37 73.0
EL10Ac7g17326 Beta vulgaris HOM05D001458 ORTHO05D006787 6.2e-07 57.8 62 46.8
Nn2g10614 Nelumbo nucifera HOM05D001458 ORTHO05D006787 6.2e-07 57.8 37 70.3
GSVIVG01025540001 Vitis vinifera HOM05D001458 ORTHO05D006787 6.2e-07 57.8 37 73.0
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 8.1e-07 57.4 37 73.0
Nitab4.5_0006316g0010 Nicotiana tabacum HOM05D001458 ORTHO05D006787 8.1e-07 57.4 37 73.0
Solyc09g007210.4 Solanum lycopersicum HOM05D001458 ORTHO05D006787 8.1e-07 57.4 37 73.0
Sopen09g002080 Solanum pennellii HOM05D001458 ORTHO05D006787 8.1e-07 57.4 37 73.0
PGSC0003DMG400027900 Solanum tuberosum HOM05D001458 ORTHO05D006787 8.1e-07 57.4 37 73.0
TAR369G1107 Trochodendron aralioides HOM05D001458 ORTHO05D006787 8.1e-07 57.4 37 70.3
CSS0026634 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D006787 1.1e-06 57.0 37 73.0
Sabra06G0104100 Salix brachista HOM05D001458 ORTHO05D006787 1.1e-06 57.0 37 73.0
MBI14_g28308_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D006787 1.4e-06 56.6 37 67.6
PSO339G6008 Papaver somniferum HOM05D001458 ORTHO05D006787 1.4e-06 56.6 37 73.0
PSO384G1578 Papaver somniferum HOM05D001458 ORTHO05D006787 1.4e-06 56.6 37 73.0
PGR004G0986 Punica granatum HOM05D001458 ORTHO05D006787 1.4e-06 56.6 37 73.0
CDE04G2715 Ceratophyllum demersum HOM05D001458 ORTHO05D006787 1.8e-06 56.2 37 70.3
Migut.L01653 Erythranthe guttata HOM05D001458 ORTHO05D006787 1.8e-06 56.2 37 67.6
Glyma.10G048300 Glycine max HOM05D001458 ORTHO05D006787 1.8e-06 56.2 37 73.0
MD04G1113900 Malus domestica HOM05D001458 ORTHO05D006787 1.8e-06 56.2 45 60.0
VMungo0464G1099 Vigna mungo HOM05D001458 ORTHO05D006787 1.8e-06 56.2 37 73.0
CAN.G350.46 Capsicum annuum HOM05D001458 ORTHO05D006787 2.4e-06 55.8 37 70.3
Cfa017488 Carpinus fangiana HOM05D001458 ORTHO05D006787 2.4e-06 55.8 37 70.3
Haze_20671 Corylus avellana HOM05D001458 ORTHO05D006787 2.4e-06 55.8 37 70.3
SEGI_09198 Sequoiadendron giganteum HOM05D001458 ORTHO05D006787 2.4e-06 55.8 37 67.6
CANSAT80G0404 Cannabis sativa HOM05D001458 ORTHO05D006787 3.1e-06 55.5 37 70.3
CiPaw.09G182000 Carya illinoinensis HOM05D001458 ORTHO05D006787 3.1e-06 55.5 37 70.3
Glyma.13G136100 Glycine max HOM05D001458 ORTHO05D006787 3.1e-06 55.5 37 70.3
Lj5g0024683 Lotus japonicus HOM05D001458 ORTHO05D006787 3.1e-06 55.5 37 70.3
Lalb_Chr21g0314581 Lupinus albus HOM05D001458 ORTHO05D006787 3.1e-06 55.5 37 70.3
Phvul.007G162700 Phaseolus vulgaris HOM05D001458 ORTHO05D006787 3.1e-06 55.5 37 70.3
HPP92_003602 Vanilla planifolia HOM05D001458 ORTHO05D006787 3.1e-06 55.5 37 67.6
Ca_02309_v3 Cicer arietinum L. HOM05D001458 ORTHO05D006787 4.0e-06 55.1 37 70.3
QL07p045562 Quercus lobata HOM05D001458 ORTHO05D006787 5.3e-06 54.7 37 64.9
TPR.G35661 Trifolium pratense HOM05D001458 ORTHO05D006787 5.3e-06 54.7 37 70.3
ATR0594G128 Amborella trichopoda HOM05D001458 ORTHO05D006787 6.9e-06 54.3 37 62.2
Eucgr.K03202 Eucalyptus grandis HOM05D001458 ORTHO05D006787 6.9e-06 54.3 37 67.6
Cre02.g084800 Chlamydomonas reinhardtii HOM05D001458 ORTHO05D006787 9.0e-06 53.9 37 62.2
Medtr1g067040 Medicago truncatula HOM05D001458 ORTHO05D006787 9.0e-06 53.9 37 67.6


User provided reference genes

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