Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 0.0e+00 1517.7 806 100.0
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 0.0e+00 1352.4 810 86.4
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 0.0e+00 1338.2 812 84.7
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 0.0e+00 1332.4 812 84.2
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 0.0e+00 1328.5 838 82.2
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 0.0e+00 1320.4 810 82.3
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 0.0e+00 1317.4 810 82.5
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 0.0e+00 1307.0 811 83.5
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 0.0e+00 1305.0 810 82.0
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 0.0e+00 1301.2 810 81.2
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 0.0e+00 1129.0 800 75.5
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 0.0e+00 1097.8 810 70.7
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 0.0e+00 1097.0 811 68.6
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 1.0e-295 1020.0 624 84.5
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 2.8e-282 975.3 810 62.2
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.2e-279 965.7 813 61.5
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 3.2e-278 961.8 813 61.1
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 3.2e-278 961.8 811 61.0
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 3.6e-277 958.4 813 61.0
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 3.3e-275 951.8 812 60.0
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 1.4e-273 946.4 805 60.6
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 2.6e-272 942.2 814 59.5
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 5.9e-272 941.0 810 59.8
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 4.7e-269 931.4 811 59.9
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 1.5e-267 926.4 809 59.3
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 3.3e-267 925.2 810 58.6
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 1.4e-265 919.8 804 58.6
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 2.4e-265 919.1 810 59.1
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 1.7e-263 912.9 812 58.9
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 2.5e-262 909.1 807 58.0
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 7.2e-262 907.5 833 56.8
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.6e-261 905.2 808 58.8
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.6e-261 905.2 810 58.9
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 4.4e-259 898.3 808 58.4
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 1.7e-258 896.3 805 58.3
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 8.3e-258 894.0 819 56.9
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 1.8e-257 892.9 809 57.7
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.0e-255 887.1 810 58.0
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 1.1e-254 883.6 814 56.6
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 6.8e-252 874.4 798 57.3
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 5.7e-251 871.3 821 56.4
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 2.0e-248 862.8 800 56.5
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 7.7e-248 860.9 548 82.7
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 1.3e-247 860.1 800 55.4
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 8.6e-247 857.4 810 55.8
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 1.9e-246 856.3 813 55.4
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 3.3e-246 855.5 813 56.1
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 3.3e-246 855.5 800 55.2
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 1.0e-244 850.5 808 55.4
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 1.4e-244 850.1 782 56.0
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.8e-244 849.7 812 55.9
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 1.8e-244 849.7 811 55.9
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 3.0e-244 849.0 810 55.4
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 1.2e-243 847.0 806 56.8
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 1.7e-242 843.2 832 53.8
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 3.7e-242 842.0 795 55.0
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 4.9e-242 841.6 798 55.9
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 6.3e-242 841.3 811 54.1
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 8.3e-242 840.9 819 54.9
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 5.4e-241 838.2 794 56.0
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 5.4e-241 838.2 876 53.8
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 9.2e-241 837.4 818 54.0
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.6e-240 836.6 733 58.8
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 2.7e-240 835.9 796 54.9
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 7.8e-240 834.3 818 56.7
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 1.5e-238 830.1 804 54.5
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 2.5e-238 829.3 793 55.1
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 3.3e-238 828.9 807 54.4
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 7.3e-238 827.8 784 54.2
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 9.5e-238 827.4 809 55.1
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.6e-237 826.6 795 54.8
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 2.8e-237 825.9 794 54.9
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 6.1e-237 824.7 816 53.4
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.4e-236 823.5 793 54.4
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 2.3e-236 822.8 810 54.1
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 8.9e-236 820.8 829 51.7
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 6.4e-234 814.7 796 57.0
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 1.1e-233 813.9 794 53.7
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 3.2e-233 812.4 836 53.6
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.2e-233 812.4 812 55.0
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 4.1e-233 812.0 804 52.4
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.3e-230 802.4 779 53.7
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 1.6e-229 800.0 816 51.7
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 2.5e-222 776.2 816 51.2
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 1.7e-215 753.4 820 52.1
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.3e-210 737.3 744 52.6
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.2e-209 732.6 855 49.8
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 9.0e-204 714.5 875 45.8
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 1.7e-199 700.3 613 59.7
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-198 697.6 623 59.9
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-198 697.6 623 59.9
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 5.3e-196 688.7 821 47.5
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.3e-190 669.1 623 58.3
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 2.5e-182 643.3 621 55.6
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.3e-178 630.9 592 56.6
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 3.2e-169 599.7 768 44.3
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 4.2e-169 599.4 718 46.5
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 7.9e-160 568.5 726 44.2
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 4.4e-158 562.8 808 39.5
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 2.2e-149 533.9 807 40.6
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 6.3e-141 505.8 402 63.4
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 2.3e-130 470.7 466 52.6
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.0e-122 445.3 552 45.1
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 4.7e-120 436.4 330 62.4
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 4.7e-120 436.4 497 50.7
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 5.2e-111 406.4 342 58.8
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.2e-110 405.2 339 59.3
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 7.5e-110 402.5 827 34.2
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 2.9e-109 400.6 396 55.3
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 7.8e-107 392.5 780 35.3
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.4e-92 344.4 396 49.5
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.0e-90 339.0 750 32.3
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 1.0e-74 285.8 238 58.4
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.0e-74 285.8 458 39.3
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 5.1e-74 283.5 253 58.1
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 2.9e-69 267.7 485 37.5
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.4e-68 265.4 296 50.0
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 5.7e-65 253.4 893 28.3
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.6e-65 252.7 183 62.8
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.3e-64 252.3 340 44.1
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.3e-61 242.3 378 42.3
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.9e-60 238.4 308 46.1
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.4e-54 217.6 188 55.3
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.0e-50 206.1 230 45.7
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 8.8e-50 203.0 144 65.3
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.1e-39 169.5 158 53.8
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 9.4e-36 156.4 210 41.0
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 7.5e-33 146.7 147 51.0
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 8.5e-29 133.3 220 40.9
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.0e-26 126.3 169 42.6
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 1.4e-26 125.9 186 41.4
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 4.4e-25 120.9 73 84.9
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 5.7e-25 120.6 143 46.2
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.3e-24 119.4 169 40.8
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 5.4e-23 114.0 237 33.3
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 2.0e-22 112.1 72 79.2
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 8.3e-16 90.1 104 45.2
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 5.6e-12 77.4 242 24.4
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 8.9e-10 70.1 325 22.8


User provided reference genes

Program Settings